Literature DB >> 23476284

4-(5-Chloro-penta-namido)-benzene-sulfonamide.

Hasan Türkmen1, Serife Pınar Yalçın, Mehmet Akkurt, Mustafa Durgun.   

Abstract

The mol-ecular conformation of the title compound, C11H15ClN2O3S, is stabilized by a C-H⋯O n class="Chemical">hydrogen bond, forming an S(6) ring motif. In the crystal, mol-ecules are linked by two pairs of inversion-related N-H⋯O hydrogen bonds, generating R2(2)(8) and R2(2)(20) ring motifs, resulting in chains running along [0-11]. These chains are connected by N-H⋯O hydrogen bonds along [100], forming layers parallel to (011). There are also C-H⋯π inter-actions between the layers, which consolidate the three-dimensional structure.

Entities:  

Year:  2012        PMID: 23476284      PMCID: PMC3589048          DOI: 10.1107/S1600536812048118

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Sulfonamides represent an important class of biologically active compounds. For their action as inhibitors of carbonic anhydrase enzyme, their anti­bacterial properties in chemotherapy, as anti­thyroid drugs, and for their anti­microbial properties, see: Maren (1987 ▶); n class="Chemical">Supuran (2008 ▶); Turkmen et al. (2005 ▶, 2011 ▶); Rami et al. (2011 ▶). For their anti­viral properties, such as HIV protease inhibitors, see: De Clercq (2001 ▶) and as inhibitors of cysteine protease enzyme, see: Danial & Korsmeyer (2004 ▶). For related structures, see: Yalçın et al. (2012 ▶); Akkurt et al. (2010a ▶,b ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C11H15ClN2O3S M = 290.77 Triclinic, a = 8.4872 (1) Å b = 8.7730 (2) Å c = 10.4572 (3) Å α = 73.711 (4)° β = 85.281 (4)° γ = 63.393 (3)° V = 667.37 (3) Å3 Z = 2 Mo Kα radiation μ = 0.44 mm−1 T = 294 K 0.24 × 0.15 × 0.12 mm

Data collection

Rigaku R-AXIS RAPID-S diffractometer Absorption correction: multi-scan (SORTAV; Blessing, 1995 ▶) T min = 0.901, T max = 0.949 20164 measured reflections 4036 independent reflections 2815 reflections with I > 2σ(I) R int = 0.068

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.169 S = 1.05 4036 reflections 172 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.35 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812048118/su2531sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812048118/su2531Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812048118/su2531Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H15ClN2O3SZ = 2
Mr = 290.77F(000) = 304
Triclinic, P1Dx = 1.447 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4872 (1) ÅCell parameters from 3036 reflections
b = 8.7730 (2) Åθ = 2.7–30.5°
c = 10.4572 (3) ŵ = 0.44 mm1
α = 73.711 (4)°T = 294 K
β = 85.281 (4)°Needle, pale yellow
γ = 63.393 (3)°0.24 × 0.15 × 0.12 mm
V = 667.37 (3) Å3
Rigaku R-AXIS RAPID-S diffractometer4036 independent reflections
Radiation source: Sealed Tube2815 reflections with I > 2σ(I)
Graphite Monochromator monochromatorRint = 0.068
Detector resolution: 10.0000 pixels mm-1θmax = 30.5°, θmin = 2.7°
dtprofit.ref scansh = −12→10
Absorption correction: multi-scan (SORTAV; Blessing, 1995)k = −12→12
Tmin = 0.901, Tmax = 0.949l = −14→14
20164 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.169H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0677P)2 + 0.2759P] where P = (Fo2 + 2Fc2)/3
4036 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.42 e Å3
3 restraintsΔρmin = −0.35 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.72069 (11)0.61911 (12)−0.09175 (8)0.0692 (3)
S1−0.03920 (8)0.03480 (8)0.77585 (6)0.0419 (2)
O10.0449 (2)−0.1257 (2)0.88113 (18)0.0500 (6)
O2−0.1417 (3)0.0370 (3)0.6723 (2)0.0572 (7)
O30.3519 (2)0.4839 (2)0.35111 (19)0.0552 (6)
N1−0.1676 (3)0.1842 (3)0.8443 (2)0.0535 (8)
N20.5163 (3)0.2301 (3)0.5050 (2)0.0416 (6)
C10.1271 (3)0.0902 (3)0.6970 (2)0.0398 (7)
C20.2959 (3)0.0145 (3)0.7555 (2)0.0426 (7)
C30.4213 (3)0.0629 (3)0.6908 (2)0.0434 (7)
C40.3823 (3)0.1871 (3)0.5670 (2)0.0385 (7)
C50.2142 (4)0.2581 (4)0.5068 (3)0.0586 (9)
C60.0901 (4)0.2088 (4)0.5723 (3)0.0611 (10)
C70.4969 (3)0.3716 (3)0.4010 (2)0.0389 (7)
C80.6648 (3)0.3843 (3)0.3549 (3)0.0424 (7)
C90.6398 (3)0.5164 (4)0.2196 (3)0.0479 (8)
C100.8041 (4)0.5387 (4)0.1751 (3)0.0481 (8)
C110.7774 (5)0.6762 (4)0.0441 (3)0.0614 (11)
H1NA−0.226 (4)0.288 (2)0.788 (3)0.0830*
H20.32410−0.068800.838400.0510*
H1NB−0.123 (4)0.179 (5)0.918 (2)0.0830*
H2N0.623 (2)0.165 (4)0.542 (3)0.0830*
H30.534000.011600.730600.0520*
H50.186400.338600.422600.0700*
H6−0.021500.256700.531500.0730*
H8A0.754000.268400.350400.0510*
H8B0.707200.419200.419900.0510*
H9A0.603600.477600.153900.0570*
H9B0.545500.630500.222900.0570*
H10A0.843700.571300.243000.0580*
H10B0.896500.425800.167300.0580*
H11A0.884800.690000.025300.0740*
H11B0.684200.789000.051100.0740*
U11U22U33U12U13U23
Cl10.0689 (5)0.0792 (6)0.0525 (4)−0.0331 (4)0.0030 (4)−0.0072 (4)
S10.0379 (3)0.0438 (3)0.0432 (3)−0.0228 (3)−0.0011 (2)−0.0018 (2)
O10.0490 (10)0.0413 (9)0.0534 (10)−0.0225 (8)−0.0011 (8)0.0015 (8)
O20.0533 (11)0.0741 (13)0.0549 (11)−0.0404 (10)−0.0057 (9)−0.0101 (10)
O30.0387 (10)0.0531 (11)0.0557 (11)−0.0175 (9)−0.0005 (8)0.0077 (9)
N10.0487 (14)0.0476 (13)0.0476 (13)−0.0144 (11)0.0006 (11)−0.0003 (10)
N20.0343 (10)0.0437 (11)0.0411 (11)−0.0180 (9)−0.0022 (8)−0.0009 (9)
C10.0373 (12)0.0411 (12)0.0416 (12)−0.0213 (10)−0.0008 (10)−0.0047 (10)
C20.0409 (13)0.0424 (12)0.0399 (12)−0.0211 (11)−0.0056 (10)0.0023 (10)
C30.0342 (12)0.0422 (12)0.0455 (13)−0.0153 (10)−0.0078 (10)0.0000 (10)
C40.0357 (12)0.0432 (12)0.0378 (11)−0.0203 (10)0.0003 (9)−0.0076 (10)
C50.0488 (15)0.0720 (18)0.0456 (14)−0.0362 (14)−0.0149 (12)0.0185 (13)
C60.0435 (15)0.077 (2)0.0528 (15)−0.0348 (15)−0.0160 (12)0.0159 (14)
C70.0376 (12)0.0420 (12)0.0365 (11)−0.0177 (10)0.0035 (10)−0.0101 (10)
C80.0365 (12)0.0432 (12)0.0464 (13)−0.0186 (10)0.0051 (10)−0.0100 (10)
C90.0426 (14)0.0565 (15)0.0474 (14)−0.0287 (12)0.0048 (11)−0.0076 (12)
C100.0458 (14)0.0527 (15)0.0517 (14)−0.0292 (12)0.0095 (12)−0.0126 (12)
C110.0676 (19)0.0628 (18)0.0634 (18)−0.0410 (16)0.0158 (15)−0.0143 (15)
Cl1—C111.797 (4)C7—C81.508 (4)
S1—O11.4365 (18)C8—C91.516 (4)
S1—O21.435 (2)C9—C101.512 (5)
S1—N11.593 (2)C10—C111.504 (4)
S1—C11.763 (3)C2—H20.9300
O3—C71.220 (3)C3—H30.9300
N2—C41.408 (4)C5—H50.9300
N2—C71.356 (3)C6—H60.9300
N1—H1NA0.87 (2)C8—H8A0.9700
N1—H1NB0.87 (3)C8—H8B0.9700
N2—H2N0.88 (3)C9—H9A0.9700
C1—C21.390 (4)C9—H9B0.9700
C1—C61.377 (4)C10—H10A0.9700
C2—C31.377 (4)C10—H10B0.9700
C3—C41.389 (3)C11—H11A0.9700
C4—C51.397 (4)C11—H11B0.9700
C5—C61.374 (5)
O1—S1—O2118.85 (13)C1—C2—H2120.00
O1—S1—N1106.87 (11)C3—C2—H2120.00
O1—S1—C1107.57 (11)C2—C3—H3120.00
O2—S1—N1107.06 (14)C4—C3—H3119.00
O2—S1—C1106.58 (13)C4—C5—H5120.00
N1—S1—C1109.75 (13)C6—C5—H5120.00
C4—N2—C7127.3 (2)C1—C6—H6119.00
S1—N1—H1NB114 (3)C5—C6—H6119.00
H1NA—N1—H1NB119 (3)C7—C8—H8A109.00
S1—N1—H1NA114.0 (18)C7—C8—H8B109.00
C7—N2—H2N115.5 (19)C9—C8—H8A109.00
C4—N2—H2N116.9 (18)C9—C8—H8B109.00
S1—C1—C6119.1 (2)H8A—C8—H8B108.00
S1—C1—C2121.99 (17)C8—C9—H9A109.00
C2—C1—C6118.9 (3)C8—C9—H9B109.00
C1—C2—C3120.0 (2)C10—C9—H9A109.00
C2—C3—C4121.1 (2)C10—C9—H9B109.00
C3—C4—C5118.6 (3)H9A—C9—H9B108.00
N2—C4—C5122.8 (2)C9—C10—H10A109.00
N2—C4—C3118.6 (2)C9—C10—H10B109.00
C4—C5—C6119.8 (3)C11—C10—H10A109.00
C1—C6—C5121.5 (3)C11—C10—H10B109.00
O3—C7—C8122.4 (2)H10A—C10—H10B108.00
N2—C7—C8115.8 (2)Cl1—C11—H11A109.00
O3—C7—N2121.8 (3)Cl1—C11—H11B109.00
C7—C8—C9112.6 (2)C10—C11—H11A109.00
C8—C9—C10113.4 (2)C10—C11—H11B109.00
C9—C10—C11113.6 (3)H11A—C11—H11B108.00
Cl1—C11—C10112.5 (3)
O1—S1—C1—C2−15.8 (2)C6—C1—C2—C32.2 (4)
O2—S1—C1—C2−144.3 (2)C1—C2—C3—C40.0 (4)
N1—S1—C1—C2100.2 (2)C2—C3—C4—N2−179.4 (2)
O1—S1—C1—C6162.6 (2)C2—C3—C4—C5−2.2 (4)
O2—S1—C1—C634.2 (3)N2—C4—C5—C6179.2 (3)
N1—S1—C1—C6−81.5 (2)C3—C4—C5—C62.1 (4)
C7—N2—C4—C3−164.6 (2)C4—C5—C6—C10.1 (5)
C7—N2—C4—C518.3 (4)O3—C7—C8—C9−16.5 (3)
C4—N2—C7—O32.2 (4)N2—C7—C8—C9165.7 (2)
C4—N2—C7—C8180.0 (2)C7—C8—C9—C10176.7 (2)
S1—C1—C2—C3−179.42 (18)C8—C9—C10—C11−177.1 (3)
S1—C1—C6—C5179.3 (2)C9—C10—C11—Cl1−63.2 (3)
C2—C1—C6—C5−2.2 (4)
D—H···AD—HH···AD···AD—H···A
C5—H5···O30.932.252.809 (4)118
N1—H1NA···O3i0.87 (2)1.99 (3)2.865 (3)176 (3)
N1—H1NB···O1ii0.87 (3)2.11 (2)2.963 (3)166 (4)
N2—H2N···O2iii0.88 (3)2.17 (3)3.021 (4)166 (3)
C10—H10A···Cg1iv0.972.963.771 (3)142
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C5—H5⋯O30.932.252.809 (4)118
N1—H1NA⋯O3i 0.87 (2)1.99 (3)2.865 (3)176 (3)
N1—H1NB⋯O1ii 0.87 (3)2.11 (2)2.963 (3)166 (4)
N2—H2N⋯O2iii 0.88 (3)2.17 (3)3.021 (4)166 (3)
C10—H10ACg1iv 0.972.963.771 (3)142

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  12 in total

Review 1.  New developments in anti-HIV chemotherapy.

Authors:  E De Clercq
Journal:  Curr Med Chem       Date:  2001-11       Impact factor: 4.530

Review 2.  Cell death: critical control points.

Authors:  Nika N Danial; Stanley J Korsmeyer
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

Review 3.  Carbonic anhydrases: novel therapeutic applications for inhibitors and activators.

Authors:  Claudiu T Supuran
Journal:  Nat Rev Drug Discov       Date:  2008-02       Impact factor: 84.694

4.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

5.  Synthesis of rhodamine B-benzenesulfonamide conjugates and their inhibitory activity against human α- and bacterial/fungal β-carbonic anhydrases.

Authors:  Marouan Rami; Alessio Innocenti; Jean-Louis Montero; Andrea Scozzafava; Jean-Yves Winum; Claudiu T Supuran
Journal:  Bioorg Med Chem Lett       Date:  2011-07-21       Impact factor: 2.823

6.  2-Chloro-N-(4-sulfamoylphen-yl)acetamide.

Authors:  Mehmet Akkurt; Serife Pınar Yalçın; Hasan Türkmen; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-05

7.  Carbonic anhydrase inhibitors. Novel sulfanilamide/acetazolamide derivatives obtained by the tail approach and their interaction with the cytosolic isozymes I and II, and the tumor-associated isozyme IX.

Authors:  Hasan Turkmen; Mustafa Durgun; Serpil Yilmaztekin; Mahmut Emul; Alessio Innocenti; Daniela Vullo; Andrea Scozzafava; Claudiu T Supuran
Journal:  Bioorg Med Chem Lett       Date:  2005-01-17       Impact factor: 2.823

8.  3-Chloro-N-(4-sulfamoylphen-yl)propanamide.

Authors:  Mehmet Akkurt; Serife Pınar Yalçın; Hasan Türkmen; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-05

9.  4-(3-Chloro-2,2-dimethyl-propanamido)-benzene-sulfonamide.

Authors:  Serife Pınar Yalçın; Mehmet Akkurt; Mustafa Durgun; Baki Türkkan; Hasan Türkmen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-24

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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