Literature DB >> 21522340

2-Amino-6-methyl-pyridinium 4-nitro-benzoate.

Wei-Min Dai1, He Zhou, Yi-Qiao Hu.   

Abstract

In the crystal structure of the title salt, C(6)H(9)N(2) (+)·C(7)H(4)NO(4) (-), the cations and anions are linked by N-H⋯O hydrogen bonds, forming chains running parallel to the b axis.

Entities:  

Year:  2011        PMID: 21522340      PMCID: PMC3052051          DOI: 10.1107/S1600536811003539

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to ways of decreasing of bitterness in foods and medicines, see: Suzuki et al. (2002 ▶, 2004 ▶); Hofmann (1999 ▶); Shaw et al. (1984 ▶). For bond-length data, see: Allen et al. (1987 ▶). For related structures, see: Saminathan & Sivakumar (2007a ▶,b ▶); Näther et al. (1997 ▶); In et al. (1997 ▶); Harrison et al. (2007 ▶); Soriano-García et al. (1990 ▶); You et al. (2007 ▶).

Experimental

Crystal data

C6H9N2 +·C7H4NO4 M = 275.26 Monoclinic, a = 8.0487 (11) Å b = 6.7247 (9) Å c = 12.7467 (17) Å β = 101.802 (7)° V = 675.33 (16) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 298 K 0.20 × 0.20 × 0.18 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.980, T max = 0.982 4175 measured reflections 1591 independent reflections 1265 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.105 S = 1.04 1591 reflections 191 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.12 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811003539/rz2548sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811003539/rz2548Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C7H4NO4F(000) = 288
Mr = 275.26Dx = 1.354 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1260 reflections
a = 8.0487 (11) Åθ = 2.5–24.5°
b = 6.7247 (9) ŵ = 0.10 mm1
c = 12.7467 (17) ÅT = 298 K
β = 101.802 (7)°Block, colourless
V = 675.33 (16) Å30.20 × 0.20 × 0.18 mm
Z = 2
Bruker SMART 1000 CCD area-detector diffractometer1591 independent reflections
Radiation source: fine-focus sealed tube1265 reflections with I > 2σ(I)
graphiteRint = 0.026
ω scansθmax = 27.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −10→9
Tmin = 0.980, Tmax = 0.982k = −8→8
4175 measured reflectionsl = −16→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0566P)2 + 0.0371P] where P = (Fo2 + 2Fc2)/3
1591 reflections(Δ/σ)max = 0.001
191 parametersΔρmax = 0.12 e Å3
5 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.6188 (2)0.2067 (4)0.26835 (16)0.0512 (5)
N20.5065 (3)0.1703 (4)0.08960 (18)0.0686 (7)
N31.1646 (3)0.0460 (4)0.2380 (2)0.0627 (6)
O11.1579 (3)−0.0626 (4)0.16070 (19)0.0851 (7)
O21.2502 (3)0.0106 (4)0.32683 (18)0.0880 (7)
O30.7086 (2)0.8232 (3)0.09467 (14)0.0688 (5)
O40.8038 (2)0.8810 (3)0.26794 (14)0.0657 (5)
C11.0666 (3)0.2328 (4)0.2239 (2)0.0516 (6)
C20.9742 (3)0.2807 (4)0.1239 (2)0.0561 (6)
H20.97130.19550.06610.067*
C30.8860 (3)0.4578 (4)0.11130 (19)0.0533 (6)
H30.82370.49270.04410.064*
C40.8890 (3)0.5844 (4)0.19746 (17)0.0466 (5)
C50.9823 (3)0.5302 (4)0.29720 (19)0.0582 (7)
H50.98450.61370.35560.070*
C61.0720 (3)0.3536 (4)0.3108 (2)0.0583 (7)
H61.13480.31770.37770.070*
C70.7922 (3)0.7779 (4)0.1853 (2)0.0514 (6)
C80.6412 (3)0.3019 (5)0.3640 (2)0.0608 (7)
C90.5624 (4)0.4787 (5)0.3702 (3)0.0767 (9)
H90.57700.54680.43500.092*
C100.4597 (4)0.5562 (5)0.2784 (3)0.0770 (9)
H100.40590.67750.28230.092*
C110.4361 (3)0.4599 (5)0.1837 (3)0.0656 (8)
H110.36620.51350.12310.079*
C120.5192 (3)0.2767 (4)0.1779 (2)0.0542 (6)
C130.7530 (4)0.2001 (7)0.4557 (2)0.0845 (10)
H13A0.70530.07310.46720.127*
H13B0.76220.28010.51900.127*
H13C0.86360.18160.43990.127*
H10.676 (4)0.092 (3)0.264 (2)0.080*
H2A0.440 (3)0.204 (5)0.0282 (13)0.080*
H2B0.571 (3)0.064 (3)0.088 (2)0.080*
U11U22U33U12U13U23
N10.0508 (11)0.0513 (13)0.0501 (10)0.0044 (10)0.0069 (8)0.0074 (10)
N20.0733 (15)0.0610 (16)0.0586 (13)0.0073 (13)−0.0163 (11)0.0064 (13)
N30.0631 (13)0.0528 (15)0.0738 (15)0.0060 (11)0.0178 (11)0.0139 (13)
O10.1048 (16)0.0672 (14)0.0887 (15)0.0245 (13)0.0325 (13)0.0011 (13)
O20.0926 (15)0.0715 (16)0.0917 (14)0.0277 (13)−0.0003 (12)0.0160 (13)
O30.0837 (12)0.0484 (11)0.0595 (10)0.0035 (10)−0.0198 (8)0.0002 (9)
O40.0827 (12)0.0477 (11)0.0568 (10)0.0119 (10)−0.0088 (9)−0.0042 (9)
C10.0492 (12)0.0439 (14)0.0621 (14)−0.0003 (10)0.0125 (10)0.0091 (12)
C20.0641 (14)0.0527 (16)0.0516 (13)0.0013 (13)0.0118 (11)−0.0010 (12)
C30.0603 (14)0.0508 (15)0.0449 (12)−0.0013 (12)0.0019 (11)0.0042 (12)
C40.0483 (12)0.0389 (12)0.0485 (12)−0.0047 (10)0.0001 (9)0.0038 (10)
C50.0675 (16)0.0501 (15)0.0502 (13)0.0024 (13)−0.0042 (11)−0.0028 (13)
C60.0625 (15)0.0531 (17)0.0531 (13)0.0044 (12)−0.0027 (11)0.0072 (12)
C70.0535 (12)0.0394 (13)0.0539 (13)−0.0048 (11)−0.0062 (10)0.0004 (12)
C80.0603 (14)0.0689 (17)0.0555 (14)0.0064 (14)0.0173 (11)0.0015 (14)
C90.079 (2)0.078 (2)0.0775 (19)0.0153 (18)0.0268 (16)−0.0056 (18)
C100.0680 (17)0.066 (2)0.102 (2)0.0169 (16)0.0304 (16)0.004 (2)
C110.0519 (14)0.0621 (18)0.0810 (19)0.0102 (13)0.0097 (13)0.0150 (16)
C120.0457 (12)0.0548 (16)0.0589 (14)−0.0025 (11)0.0033 (10)0.0115 (13)
C130.099 (2)0.102 (3)0.0512 (15)0.022 (2)0.0107 (14)0.0011 (18)
N1—C121.348 (3)C4—C51.386 (3)
N1—C81.356 (3)C4—C71.508 (3)
N1—H10.908 (10)C5—C61.382 (4)
N2—C121.320 (4)C5—H50.9300
N2—H2A0.883 (10)C6—H60.9300
N2—H2B0.889 (10)C8—C91.357 (4)
N3—O11.218 (3)C8—C131.488 (4)
N3—O21.223 (3)C9—C101.389 (4)
N3—C11.475 (3)C9—H90.9300
O3—C71.250 (3)C10—C111.349 (4)
O4—C71.249 (3)C10—H100.9300
C1—C61.368 (4)C11—C121.411 (4)
C1—C21.376 (3)C11—H110.9300
C2—C31.379 (4)C13—H13A0.9600
C2—H20.9300C13—H13B0.9600
C3—C41.386 (3)C13—H13C0.9600
C3—H30.9300
C12—N1—C8123.4 (2)C5—C6—H6120.7
C12—N1—H1117.8 (19)O4—C7—O3125.3 (2)
C8—N1—H1118.7 (19)O4—C7—C4116.4 (2)
C12—N2—H2A122.9 (19)O3—C7—C4118.3 (2)
C12—N2—H2B121.1 (18)N1—C8—C9119.2 (3)
H2A—N2—H2B116 (2)N1—C8—C13115.9 (3)
O1—N3—O2123.8 (2)C9—C8—C13124.9 (3)
O1—N3—C1118.5 (2)C8—C9—C10118.9 (3)
O2—N3—C1117.7 (2)C8—C9—H9120.5
C6—C1—C2122.2 (2)C10—C9—H9120.5
C6—C1—N3118.7 (2)C11—C10—C9121.7 (3)
C2—C1—N3119.1 (2)C11—C10—H10119.2
C1—C2—C3118.5 (2)C9—C10—H10119.2
C1—C2—H2120.7C10—C11—C12119.0 (3)
C3—C2—H2120.7C10—C11—H11120.5
C2—C3—C4120.9 (2)C12—C11—H11120.5
C2—C3—H3119.6N2—C12—N1118.0 (2)
C4—C3—H3119.6N2—C12—C11124.3 (2)
C3—C4—C5118.9 (2)N1—C12—C11117.7 (3)
C3—C4—C7121.6 (2)C8—C13—H13A109.5
C5—C4—C7119.5 (2)C8—C13—H13B109.5
C6—C5—C4120.8 (2)H13A—C13—H13B109.5
C6—C5—H5119.6C8—C13—H13C109.5
C4—C5—H5119.6H13A—C13—H13C109.5
C1—C6—C5118.6 (2)H13B—C13—H13C109.5
C1—C6—H6120.7
D—H···AD—HH···AD···AD—H···A
N1—H1···O4i0.91 (2)1.75 (3)2.649 (3)173 (2)
N2—H2A···O3ii0.89 (2)1.94 (2)2.812 (3)170.(2)
N2—H2B···O3i0.89 (2)1.95 (2)2.838 (3)176 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O4i0.91 (2)1.75 (3)2.649 (3)173 (2)
N2—H2A⋯O3ii0.89 (2)1.94 (2)2.812 (3)170 (2)
N2—H2B⋯O3i0.89 (2)1.95 (2)2.838 (3)176 (2)

Symmetry codes: (i) ; (ii) .

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