Literature DB >> 23476226

1-[(3,5-Dimethyl-1H-pyrazol-1-yl)carbon-yl]-5-methyl-indolizine-3-carbo-nitrile.

Wei-Jin Gu1, Wen-Li Xie, Ting-Ting Wang.   

Abstract

In the title mol-ecule, C16H14N4O, the indolizine ring system is essentially planar, with a maximum deviation of 0.013 (3) Å, and forms a dihedral angle of 7.52 (12)° with the pyrazole ring. In the crystal, weak C-H⋯O hydrogen bonds and π-π stacking inter-actions, with a centroid-centroid distance of 3.6378 (16) Å, link mol-ecules along [001].

Entities:  

Year:  2012        PMID: 23476226      PMCID: PMC3588990          DOI: 10.1107/S1600536812046727

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological applications of indolizines and pyrazoles, see: Tukulula et al. (2010 ▶); James et al. (2008 ▶); Teklu et al. (2005 ▶); McDonald et al. (2006 ▶); Jagerovic et al. (2002 ▶). For background and the synthesis of related hetrocycles, see: Gu et al. (2011 ▶); Shen et al. (2006 ▶, 2008 ▶); Wang, et al. (2000 ▶).

Experimental

Crystal data

C16H14N4O M = 278.31 Monoclinic, a = 8.5911 (18) Å b = 23.3760 (15) Å c = 7.5816 (12) Å β = 114.775 (3)° V = 1382.4 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 291 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.974, T max = 0.983 7822 measured reflections 2361 independent reflections 1728 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.135 S = 1.05 2361 reflections 194 parameters 1 restraint H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.15 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812046727/lh5554sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812046727/lh5554Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812046727/lh5554Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14N4OF(000) = 584
Mr = 278.31Dx = 1.337 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1864 reflections
a = 8.5911 (18) Åθ = 2.1–23.1°
b = 23.3760 (15) ŵ = 0.09 mm1
c = 7.5816 (12) ÅT = 291 K
β = 114.775 (3)°Block, colorless
V = 1382.4 (4) Å30.30 × 0.25 × 0.20 mm
Z = 4
Bruker SMART APEX diffractometer2361 independent reflections
Radiation source: sealed tube1728 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.037
φ and ω scansθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −10→10
Tmin = 0.974, Tmax = 0.983k = −27→27
7822 measured reflectionsl = −8→7
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.135w = 1/[σ2(Fo2) + (0.0667P)2 + 0.2279P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2361 reflectionsΔρmax = 0.19 e Å3
194 parametersΔρmin = −0.15 e Å3
1 restraintExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4078 (3)0.16105 (9)0.6276 (3)0.0539 (6)
C20.5673 (3)0.16955 (11)0.7688 (3)0.0674 (7)
H20.63420.13800.82920.081*
C30.6350 (3)0.22472 (11)0.8269 (4)0.0706 (7)
H30.74580.22910.92270.085*
C40.5393 (3)0.27142 (10)0.7437 (3)0.0610 (6)
H40.58350.30790.78340.073*
C50.3740 (3)0.26454 (9)0.5980 (3)0.0494 (5)
C60.2428 (2)0.30329 (9)0.4823 (3)0.0473 (5)
C70.1052 (3)0.27046 (9)0.3576 (3)0.0502 (5)
H70.00230.28490.26550.060*
C80.1454 (2)0.21350 (7)0.3920 (3)0.0495 (5)
C90.0408 (3)0.16786 (8)0.2894 (3)0.0572 (6)
C100.3329 (3)0.10310 (10)0.5630 (4)0.0698 (7)
H10A0.41010.07460.64400.105*
H10B0.31500.09710.43050.105*
H10C0.22530.10030.57270.105*
C110.2680 (3)0.36492 (10)0.5125 (3)0.0553 (6)
C120.1506 (3)0.46295 (9)0.3983 (3)0.0514 (5)
C130.0074 (3)0.48077 (9)0.2476 (3)0.0565 (6)
H13−0.02560.51860.21400.068*
C14−0.0831 (3)0.43187 (9)0.1502 (3)0.0524 (5)
C15−0.2500 (3)0.42892 (10)−0.0234 (4)0.0673 (7)
H15A−0.23090.4329−0.13890.101*
H15B−0.32320.4592−0.01780.101*
H15C−0.30350.3927−0.02560.101*
C160.2889 (3)0.49760 (11)0.5473 (4)0.0703 (7)
H16A0.26300.53750.52220.105*
H16B0.39630.48940.54180.105*
H16C0.29660.48820.67400.105*
N10.3117 (2)0.20945 (7)0.5412 (2)0.0481 (5)
N2−0.0540 (3)0.13371 (9)0.1932 (3)0.0792 (7)
N30.1439 (2)0.40334 (7)0.3880 (3)0.0505 (5)
N4−0.0015 (2)0.38486 (7)0.2341 (3)0.0543 (5)
O10.3936 (2)0.38496 (7)0.6446 (3)0.0837 (6)
U11U22U33U12U13U23
C10.0572 (14)0.0536 (13)0.0514 (13)0.0122 (10)0.0232 (12)0.0077 (10)
C20.0593 (15)0.0719 (17)0.0605 (16)0.0190 (12)0.0147 (14)0.0098 (12)
C30.0499 (14)0.0874 (19)0.0578 (16)0.0108 (13)0.0061 (12)0.0002 (13)
C40.0555 (14)0.0631 (14)0.0525 (14)0.0036 (11)0.0108 (12)−0.0049 (11)
C50.0492 (13)0.0542 (13)0.0434 (13)0.0025 (10)0.0179 (11)−0.0012 (9)
C60.0466 (12)0.0495 (12)0.0415 (12)0.0015 (9)0.0141 (10)−0.0008 (9)
C70.0452 (12)0.0535 (13)0.0452 (12)0.0017 (9)0.0125 (10)0.0023 (10)
C80.0473 (12)0.0498 (13)0.0480 (13)0.0019 (9)0.0165 (11)0.0023 (9)
C90.0535 (14)0.0513 (13)0.0578 (15)−0.0016 (11)0.0145 (12)0.0037 (11)
C100.0733 (16)0.0571 (15)0.0756 (18)0.0125 (12)0.0280 (14)0.0122 (12)
C110.0493 (13)0.0569 (14)0.0483 (13)−0.0009 (10)0.0092 (12)−0.0052 (10)
C120.0494 (13)0.0480 (12)0.0565 (13)−0.0065 (10)0.0220 (11)−0.0069 (10)
C130.0534 (13)0.0433 (12)0.0677 (15)0.0006 (10)0.0205 (12)0.0015 (10)
C140.0503 (12)0.0483 (12)0.0548 (14)0.0005 (10)0.0183 (11)0.0023 (10)
C150.0541 (14)0.0627 (15)0.0688 (16)0.0000 (11)0.0096 (13)0.0040 (12)
C160.0640 (15)0.0585 (15)0.0795 (18)−0.0122 (11)0.0213 (14)−0.0131 (12)
N10.0475 (10)0.0517 (10)0.0441 (11)0.0068 (8)0.0181 (9)0.0030 (8)
N20.0789 (15)0.0564 (13)0.0822 (16)−0.0097 (11)0.0141 (13)0.0027 (11)
N30.0496 (10)0.0445 (10)0.0497 (11)−0.0015 (8)0.0134 (9)−0.0016 (8)
N40.0490 (10)0.0487 (10)0.0510 (11)−0.0034 (8)0.0071 (9)−0.0007 (8)
O10.0668 (11)0.0636 (10)0.0771 (12)−0.0006 (9)−0.0126 (10)−0.0156 (9)
C1—C21.354 (3)C10—H10B0.9600
C1—N11.392 (3)C10—H10C0.9600
C1—C101.492 (3)C11—O11.217 (3)
C2—C31.407 (3)C11—N31.411 (3)
C2—H20.9300C12—C131.347 (3)
C3—C41.353 (3)C12—N31.395 (3)
C3—H30.9300C12—C161.490 (3)
C4—C51.396 (3)C13—C141.405 (3)
C4—H40.9300C13—H130.9300
C5—N11.392 (3)C14—N41.315 (3)
C5—C61.426 (3)C14—C151.487 (3)
C6—C71.394 (3)C15—H15A0.9600
C6—C111.460 (3)C15—H15B0.9600
C7—C81.373 (3)C15—H15C0.9600
C7—H70.9300C16—H16A0.9600
C8—C91.4017 (10)C16—H16B0.9600
C8—N11.405 (3)C16—H16C0.9600
C9—N21.156 (2)N3—N41.374 (2)
C10—H10A0.9600
C2—C1—N1117.2 (2)O1—C11—N3117.8 (2)
C2—C1—C10123.2 (2)O1—C11—C6122.1 (2)
N1—C1—C10119.6 (2)N3—C11—C6120.15 (19)
C1—C2—C3122.0 (2)C13—C12—N3105.07 (18)
C1—C2—H2119.0C13—C12—C16129.0 (2)
C3—C2—H2119.0N3—C12—C16125.9 (2)
C4—C3—C2120.2 (2)C12—C13—C14107.56 (19)
C4—C3—H3119.9C12—C13—H13126.2
C2—C3—H3119.9C14—C13—H13126.2
C3—C4—C5119.6 (2)N4—C14—C13111.09 (19)
C3—C4—H4120.2N4—C14—C15120.68 (19)
C5—C4—H4120.2C13—C14—C15128.2 (2)
N1—C5—C4118.9 (2)C14—C15—H15A109.5
N1—C5—C6107.16 (18)C14—C15—H15B109.5
C4—C5—C6133.9 (2)H15A—C15—H15B109.5
C7—C6—C5107.14 (19)C14—C15—H15C109.5
C7—C6—C11132.6 (2)H15A—C15—H15C109.5
C5—C6—C11120.22 (19)H15B—C15—H15C109.5
C8—C7—C6109.30 (19)C12—C16—H16A109.5
C8—C7—H7125.3C12—C16—H16B109.5
C6—C7—H7125.3H16A—C16—H16B109.5
C7—C8—C9125.51 (19)C12—C16—H16C109.5
C7—C8—N1107.97 (16)H16A—C16—H16C109.5
C9—C8—N1126.47 (18)H16B—C16—H16C109.5
N2—C9—C8174.1 (2)C1—N1—C5122.08 (18)
C1—C10—H10A109.5C1—N1—C8129.49 (17)
C1—C10—H10B109.5C5—N1—C8108.43 (16)
H10A—C10—H10B109.5N4—N3—C12111.28 (17)
C1—C10—H10C109.5N4—N3—C11122.09 (16)
H10A—C10—H10C109.5C12—N3—C11126.62 (18)
H10B—C10—H10C109.5C14—N4—N3105.00 (16)
N1—C1—C2—C3−0.1 (3)C10—C1—N1—C5178.91 (19)
C10—C1—C2—C3179.9 (2)C2—C1—N1—C8179.34 (19)
C1—C2—C3—C41.1 (4)C10—C1—N1—C8−0.7 (3)
C2—C3—C4—C5−0.9 (4)C4—C5—N1—C11.2 (3)
C3—C4—C5—N1−0.2 (3)C6—C5—N1—C1−179.24 (16)
C3—C4—C5—C6−179.6 (2)C4—C5—N1—C8−179.07 (17)
N1—C5—C6—C7−0.5 (2)C6—C5—N1—C80.5 (2)
C4—C5—C6—C7178.9 (2)C7—C8—N1—C1179.42 (18)
N1—C5—C6—C11178.04 (17)C9—C8—N1—C1−3.2 (3)
C4—C5—C6—C11−2.5 (3)C7—C8—N1—C5−0.2 (2)
C5—C6—C7—C80.4 (2)C9—C8—N1—C5177.15 (19)
C11—C6—C7—C8−177.9 (2)C13—C12—N3—N4−0.3 (2)
C6—C7—C8—C9−177.50 (19)C16—C12—N3—N4179.45 (18)
C6—C7—C8—N1−0.1 (2)C13—C12—N3—C11178.35 (18)
C7—C6—C11—O1172.3 (2)C16—C12—N3—C11−1.9 (3)
C5—C6—C11—O1−5.8 (3)O1—C11—N3—N4179.5 (2)
C7—C6—C11—N3−6.9 (3)C6—C11—N3—N4−1.2 (3)
C5—C6—C11—N3175.01 (17)O1—C11—N3—C121.0 (3)
N3—C12—C13—C140.3 (2)C6—C11—N3—C12−179.75 (18)
C16—C12—C13—C14−179.5 (2)C13—C14—N4—N30.0 (2)
C12—C13—C14—N4−0.2 (3)C15—C14—N4—N3−179.36 (18)
C12—C13—C14—C15179.1 (2)C12—N3—N4—C140.2 (2)
C2—C1—N1—C5−1.0 (3)C11—N3—N4—C14−178.54 (18)
D—H···AD—HH···AD···AD—H···A
C10—H10B···O1i0.962.563.435 (4)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C10—H10B⋯O1i 0.962.563.435 (4)151

Symmetry code: (i) .

  7 in total

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4.  Indole- and indolizine-glyoxylamides displaying cytotoxicity against multidrug resistant cancer cell lines.

Authors:  David A James; Keizo Koya; Hao Li; Guiqing Liang; Zhiqiang Xia; Weiwen Ying; Yaming Wu; Lijun Sun
Journal:  Bioorg Med Chem Lett       Date:  2008-02-16       Impact factor: 2.823

5.  Diethyl indolizine-1,3-dicarboxyl-ate.

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Review 6.  Inhibitors of the HSP90 molecular chaperone: attacking the master regulator in cancer.

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7.  Structure validation in chemical crystallography.

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  7 in total

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