Literature DB >> 21522634

Diethyl indolizine-1,3-dicarboxyl-ate.

Wei-Jin Gu1, Jin Zhuang, Yu-Liang Jiang, Bing-Xiang Wang.   

Abstract

The title compound, C(14)H(15)NO(4), was prepared by a 1,3-dipolar cyclo-addition from N-(eth-oxy-carbonyl-methy)pyridinium bromide and ethyl acrylate. The -CO(2) side chains form dihedral angles of 0.2 (3) and 2.4 (3)° with respect to the ring system. In the crystal, two neighbouring mol-ecules form a dimer through weak C-H⋯O interactions. The dimers form a three-dimensional structure via further weak C-H⋯O inter-actions.

Entities:  

Year:  2010        PMID: 21522634      PMCID: PMC3050233          DOI: 10.1107/S1600536810050919

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For synthetic procedures, see: Teklu et al. (2005 ▶), Wang et al. (2000 ▶). For the pharmaceutical use of related compounds, see: James et al. (2008 ▶), Tukulula et al. (2010 ▶). For the use of related compounds as organic fluorescence probes, see: Shen et al. (2006 ▶, 2008 ▶).

Experimental

Crystal data

C14H15NO4 M = 261.27 Monoclinic, a = 7.941 (2) Å b = 19.700 (4) Å c = 8.622 (2) Å β = 101.770 (3)° V = 1320.5 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 291 K 0.30 × 0.26 × 0.24 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.972, T max = 0.977 7930 measured reflections 2400 independent reflections 1567 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.116 S = 1.05 2400 reflections 174 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810050919/im2246sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050919/im2246Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H15NO4F(000) = 552
Mr = 261.27Dx = 1.314 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1756 reflections
a = 7.941 (2) Åθ = 2.6–22.7°
b = 19.700 (4) ŵ = 0.10 mm1
c = 8.622 (2) ÅT = 291 K
β = 101.770 (3)°Block, colorless
V = 1320.5 (5) Å30.30 × 0.26 × 0.24 mm
Z = 4
Bruker SMART APEX CCD diffractometer2400 independent reflections
Radiation source: sealed tube1567 reflections with I > 2σ(I)
graphiteRint = 0.039
phi and ω scansθmax = 25.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −9→9
Tmin = 0.972, Tmax = 0.977k = −23→23
7930 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.04P)2 + 0.33P] where P = (Fo2 + 2Fc2)/3
2400 reflections(Δ/σ)max < 0.001
174 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane)6.9517 (0.0017) x + 8.0272 (0.0048) y - 3.7352 (0.0022) z = 3.8065 (0.0031)* 0.0092 (0.0021) C1 * -0.0460 (0.0022) C2 * -0.0746 (0.0022) C3 * -0.0551 (0.0020) C4 * -0.0046 (0.0019) C5 * 0.0272 (0.0020) C6 * 0.0632 (0.0020) C7 * 0.0674 (0.0020) C8 * 0.0094 (0.0021) C9 * -0.0124 (0.0023) C10 * -0.0150 (0.0021) C11 * 0.0555 (0.0020) C12 * -0.0638 (0.0022) C13 * -0.0916 (0.0022) C14 * 0.0286 (0.0017) N1 * -0.0164 (0.0017) O1 * 0.0319 (0.0017) O2 * 0.0148 (0.0016) O3 * 0.0723 (0.0017) O4Rms deviation of fitted atoms = 0.0479
xyzUiso*/Ueq
C10.3394 (3)0.57688 (11)0.8498 (3)0.0612 (6)
H10.41110.54410.90620.073*
C20.3039 (3)0.63422 (12)0.9219 (3)0.0693 (7)
H20.35080.64091.02880.083*
C30.1963 (3)0.68414 (12)0.8365 (3)0.0690 (7)
H30.17320.72370.88710.083*
C40.1266 (3)0.67502 (11)0.6820 (3)0.0599 (6)
H40.05550.70820.62630.072*
C50.1613 (3)0.61567 (9)0.6055 (3)0.0468 (5)
C60.1093 (3)0.59243 (10)0.4502 (3)0.0524 (6)
C70.1841 (3)0.52881 (10)0.4431 (3)0.0552 (6)
H70.17010.50150.35340.066*
C80.2815 (3)0.51264 (10)0.5885 (3)0.0526 (6)
C9−0.0036 (3)0.62911 (11)0.3236 (3)0.0579 (6)
C10−0.1463 (3)0.62404 (12)0.0531 (3)0.0710 (7)
H10A−0.09540.66620.02680.085*
H10B−0.25870.63390.07520.085*
C11−0.1616 (4)0.57481 (13)−0.0806 (3)0.0770 (8)
H11A−0.04910.5640−0.09820.116*
H11B−0.22910.5946−0.17480.116*
H11C−0.21660.5341−0.05490.116*
C120.3783 (3)0.45130 (11)0.6400 (3)0.0573 (6)
C130.4462 (3)0.34094 (11)0.5611 (3)0.0698 (7)
H13A0.40100.31880.64450.084*
H13B0.56890.34760.59790.084*
C140.4129 (4)0.29840 (12)0.4151 (4)0.0864 (9)
H14A0.29110.29260.37910.130*
H14B0.46620.25480.43820.130*
H14C0.45980.32040.33400.130*
N10.2678 (2)0.56704 (9)0.6903 (2)0.0575 (5)
O1−0.0371 (2)0.59243 (8)0.1895 (2)0.0692 (5)
O2−0.0599 (2)0.68564 (8)0.3343 (2)0.0728 (5)
O30.3616 (2)0.40572 (7)0.52177 (19)0.0630 (5)
O40.4634 (2)0.44071 (8)0.7710 (2)0.0758 (5)
U11U22U33U12U13U23
C10.0625 (16)0.0608 (14)0.0556 (16)−0.0007 (12)0.0013 (13)0.0057 (12)
C20.0755 (18)0.0710 (15)0.0570 (16)−0.0005 (13)0.0032 (14)−0.0028 (13)
C30.0789 (19)0.0591 (14)0.0676 (19)0.0047 (13)0.0114 (15)−0.0030 (13)
C40.0610 (15)0.0529 (12)0.0648 (17)0.0031 (11)0.0105 (13)0.0059 (11)
C50.0422 (12)0.0446 (11)0.0532 (14)−0.0059 (9)0.0090 (11)0.0060 (10)
C60.0486 (14)0.0472 (11)0.0598 (16)−0.0025 (10)0.0070 (12)0.0078 (10)
C70.0547 (14)0.0504 (12)0.0578 (16)−0.0045 (10)0.0052 (12)0.0025 (11)
C80.0512 (14)0.0471 (11)0.0569 (15)−0.0010 (10)0.0050 (12)0.0060 (10)
C90.0558 (15)0.0535 (13)0.0628 (17)−0.0068 (11)0.0080 (13)0.0096 (12)
C100.0721 (18)0.0696 (15)0.0657 (18)0.0119 (13)0.0011 (14)0.0191 (13)
C110.0823 (19)0.0765 (16)0.0643 (18)−0.0001 (14)−0.0039 (14)0.0078 (14)
C120.0528 (15)0.0543 (13)0.0637 (17)−0.0017 (11)0.0097 (13)0.0081 (12)
C130.0644 (16)0.0550 (13)0.089 (2)0.0107 (12)0.0126 (15)0.0112 (13)
C140.084 (2)0.0547 (14)0.115 (3)0.0083 (13)0.0095 (18)−0.0047 (15)
N10.0557 (12)0.0539 (10)0.0606 (13)−0.0007 (9)0.0066 (10)0.0058 (10)
O10.0786 (12)0.0619 (9)0.0586 (11)0.0126 (8)−0.0062 (9)0.0075 (8)
O20.0819 (12)0.0518 (9)0.0797 (13)0.0090 (8)0.0048 (10)0.0100 (8)
O30.0681 (11)0.0469 (8)0.0696 (11)0.0067 (7)0.0036 (9)0.0061 (8)
O40.0801 (13)0.0756 (11)0.0644 (12)0.0177 (9)−0.0023 (10)0.0116 (9)
C1—C21.346 (3)C9—O11.344 (3)
C1—N11.390 (3)C10—O11.451 (3)
C1—H10.9300C10—C111.492 (3)
C2—C31.408 (3)C10—H10A0.9700
C2—H20.9300C10—H10B0.9700
C3—C41.346 (3)C11—H11A0.9600
C3—H30.9300C11—H11B0.9600
C4—C51.397 (3)C11—H11C0.9600
C4—H40.9300C12—O41.210 (3)
C5—N11.384 (3)C12—O31.344 (3)
C5—C61.395 (3)C13—O31.450 (2)
C6—C71.394 (3)C13—C141.490 (3)
C6—C91.455 (3)C13—H13A0.9700
C7—C81.369 (3)C13—H13B0.9700
C7—H70.9300C14—H14A0.9600
C8—N11.404 (3)C14—H14B0.9600
C8—C121.452 (3)C14—H14C0.9600
C9—O21.211 (3)
C2—C1—N1119.5 (2)O1—C10—H10B110.4
C2—C1—H1120.3C11—C10—H10B110.4
N1—C1—H1120.3H10A—C10—H10B108.6
C1—C2—C3120.4 (2)C10—C11—H11A109.5
C1—C2—H2119.8C10—C11—H11B109.5
C3—C2—H2119.8H11A—C11—H11B109.5
C4—C3—C2120.5 (2)C10—C11—H11C109.5
C4—C3—H3119.8H11A—C11—H11C109.5
C2—C3—H3119.8H11B—C11—H11C109.5
C3—C4—C5119.9 (2)O4—C12—O3122.9 (2)
C3—C4—H4120.1O4—C12—C8126.1 (2)
C5—C4—H4120.1O3—C12—C8111.1 (2)
N1—C5—C6108.02 (18)O3—C13—C14107.7 (2)
N1—C5—C4119.2 (2)O3—C13—H13A110.2
C6—C5—C4132.8 (2)C14—C13—H13A110.2
C7—C6—C5107.0 (2)O3—C13—H13B110.2
C7—C6—C9128.1 (2)C14—C13—H13B110.2
C5—C6—C9125.0 (2)H13A—C13—H13B108.5
C8—C7—C6109.6 (2)C13—C14—H14A109.5
C8—C7—H7125.2C13—C14—H14B109.5
C6—C7—H7125.2H14A—C14—H14B109.5
C7—C8—N1107.08 (18)C13—C14—H14C109.5
C7—C8—C12129.7 (2)H14A—C14—H14C109.5
N1—C8—C12123.2 (2)H14B—C14—H14C109.5
O2—C9—O1123.3 (2)C5—N1—C1120.57 (19)
O2—C9—C6125.5 (2)C5—N1—C8108.35 (18)
O1—C9—C6111.2 (2)C1—N1—C8131.08 (19)
O1—C10—C11106.8 (2)C9—O1—C10116.56 (18)
O1—C10—H10A110.4C12—O3—C13116.16 (19)
C11—C10—H10A110.4
N1—C1—C2—C3−0.4 (4)C7—C8—C12—O3−1.1 (3)
C1—C2—C3—C40.4 (4)N1—C8—C12—O3176.12 (18)
C2—C3—C4—C5−0.1 (4)C6—C5—N1—C1179.92 (18)
C3—C4—C5—N1−0.2 (3)C4—C5—N1—C10.1 (3)
C3—C4—C5—C6−179.9 (2)C6—C5—N1—C8−0.6 (2)
N1—C5—C6—C70.7 (2)C4—C5—N1—C8179.61 (18)
C4—C5—C6—C7−179.5 (2)C2—C1—N1—C50.2 (3)
N1—C5—C6—C9−179.89 (19)C2—C1—N1—C8−179.2 (2)
C4—C5—C6—C9−0.2 (4)C7—C8—N1—C50.3 (2)
C5—C6—C7—C8−0.6 (2)C12—C8—N1—C5−177.48 (19)
C9—C6—C7—C8−179.9 (2)C7—C8—N1—C1179.6 (2)
C6—C7—C8—N10.2 (2)C12—C8—N1—C11.9 (3)
C6—C7—C8—C12177.7 (2)O2—C9—O1—C100.2 (3)
C7—C6—C9—O2−176.9 (2)C6—C9—O1—C10−178.95 (19)
C5—C6—C9—O23.9 (4)C11—C10—O1—C9178.84 (19)
C7—C6—C9—O12.2 (3)O4—C12—O3—C132.4 (3)
C5—C6—C9—O1−177.01 (19)C8—C12—O3—C13−177.22 (18)
C7—C8—C12—O4179.3 (2)C14—C13—O3—C12−179.72 (19)
N1—C8—C12—O4−3.5 (4)
D—H···AD—HH···AD···AD—H···A
C2—H2···O4i0.932.593.257 (3)129
C3—H3···O2ii0.932.553.272 (3)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O4i0.932.593.257 (3)129
C3—H3⋯O2ii0.932.553.272 (3)135

Symmetry codes: (i) ; (ii) .

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