Literature DB >> 23475726

Conformational analysis of recombinant monoclonal antibodies with hydrogen/deuterium exchange mass spectrometry.

Damian Houde1, John R Engen.   

Abstract

Understanding the conformation of antibodies, especially those of therapeutic value, is of great interest. Many of the current analytical methods used to probe protein conformation face issues in the analysis of antibodies, either due to the nature of the antibody itself or due to the limitations of the method. One method that has recently been utilized for conformational analysis of antibodies is hydrogen/deuterium exchange mass spectrometry (H/DX MS). H/DX MS can be used to probe the conformation and dynamics of proteins in solution, requires small sample quantities, is compatible with many buffer systems, and provides peptide-level resolution. The application of H/DX MS to immunoglobulin gamma 1 (IgG1) recombinant monoclonal antibodies can provide information about IgG1 conformation, dynamics, and changes to conformation as a result of protein modification(s), changes in storage conditions, purification procedures, formulation, and many other parameters. In this article we provide a comprehensive H/DX MS protocol for the analysis of an antibody.

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Year:  2013        PMID: 23475726      PMCID: PMC3713497          DOI: 10.1007/978-1-62703-327-5_17

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  37 in total

1.  Semi-automated data processing of hydrogen exchange mass spectra using HX-Express.

Authors:  David D Weis; John R Engen; Ignatius J Kass
Journal:  J Am Soc Mass Spectrom       Date:  2006-08-22       Impact factor: 3.109

2.  The utility of hydrogen/deuterium exchange mass spectrometry in biopharmaceutical comparability studies.

Authors:  Damian Houde; Steven A Berkowitz; John R Engen
Journal:  J Pharm Sci       Date:  2010-12-29       Impact factor: 3.534

3.  Post-translational modifications differentially affect IgG1 conformation and receptor binding.

Authors:  Damian Houde; Yucai Peng; Steven A Berkowitz; John R Engen
Journal:  Mol Cell Proteomics       Date:  2010-01-26       Impact factor: 5.911

4.  High resolution, high-throughput amide deuterium exchange-mass spectrometry (DXMS) determination of protein binding site structure and dynamics: utility in pharmaceutical design.

Authors:  V L Woods; Y Hamuro
Journal:  J Cell Biochem Suppl       Date:  2001

5.  Probing the non-covalent structure of proteins by amide hydrogen exchange and mass spectrometry.

Authors:  D L Smith; Y Deng; Z Zhang
Journal:  J Mass Spectrom       Date:  1997-02       Impact factor: 1.982

6.  Automated extraction of backbone deuteration levels from amide H/2H mass spectrometry experiments.

Authors:  Matthew Hotchko; Ganesh S Anand; Elizabeth A Komives; Lynn F Ten Eyck
Journal:  Protein Sci       Date:  2006-03       Impact factor: 6.725

Review 7.  Development trends for monoclonal antibody cancer therapeutics.

Authors:  Janice M Reichert; Viia E Valge-Archer
Journal:  Nat Rev Drug Discov       Date:  2007-05       Impact factor: 84.694

8.  Hydrogen/deuterium exchange mass spectrometry.

Authors:  Xuguang Yan; Claudia S Maier
Journal:  Methods Mol Biol       Date:  2009

9.  Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses.

Authors:  Gordon W Slysz; Charles A H Baker; Benjamin M Bozsa; Anthony Dang; Andrew J Percy; Melissa Bennett; David C Schriemer
Journal:  BMC Bioinformatics       Date:  2009-05-27       Impact factor: 3.169

10.  The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data.

Authors:  B D Pascal; M J Chalmers; S A Busby; C C Mader; M R Southern; N F Tsinoremas; P R Griffin
Journal:  BMC Bioinformatics       Date:  2007-05-16       Impact factor: 3.169

View more
  10 in total

1.  Conformational Analysis of Proteins in Highly Concentrated Solutions by Dialysis-Coupled Hydrogen/Deuterium Exchange Mass Spectrometry.

Authors:  Damian Houde; Zeinab E Nazari; George M Bou-Assaf; Andrew S Weiskopf; Kasper D Rand
Journal:  J Am Soc Mass Spectrom       Date:  2016-02-09       Impact factor: 3.109

2.  Native MS and ECD Characterization of a Fab-Antigen Complex May Facilitate Crystallization for X-ray Diffraction.

Authors:  Ying Zhang; Weidong Cui; Aaron T Wecksler; Hao Zhang; Patricia Molina; Galahad Deperalta; Michael L Gross
Journal:  J Am Soc Mass Spectrom       Date:  2016-04-21       Impact factor: 3.109

Review 3.  Proteomics for Allergy: from Proteins to the Patients.

Authors:  Emmanuel Nony; Maxime Le Mignon; Sébastien Brier; Armelle Martelet; Philippe Moingeon
Journal:  Curr Allergy Asthma Rep       Date:  2016-09       Impact factor: 4.806

4.  Conformational dynamics of a neurotransmitter:sodium symporter in a lipid bilayer.

Authors:  Suraj Adhikary; Daniel J Deredge; Anu Nagarajan; Lucy R Forrest; Patrick L Wintrode; Satinder K Singh
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

5.  High-resolution epitope mapping by HX MS reveals the pathogenic mechanism and a possible therapy for autoimmune TTP syndrome.

Authors:  Veronica C Casina; Wenbing Hu; Jian-Hua Mao; Rui-Nan Lu; Hayley A Hanby; Brandy Pickens; Zhong-Yuan Kan; Woon K Lim; Leland Mayne; Eric M Ostertag; Stephen Kacir; Don L Siegel; S Walter Englander; X Long Zheng
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-22       Impact factor: 11.205

Review 6.  Advances in Hydrogen/Deuterium Exchange Mass Spectrometry and the Pursuit of Challenging Biological Systems.

Authors:  Ellie I James; Taylor A Murphree; Clint Vorauer; John R Engen; Miklos Guttman
Journal:  Chem Rev       Date:  2021-09-07       Impact factor: 72.087

Review 7.  Computational Structure Prediction for Antibody-Antigen Complexes From Hydrogen-Deuterium Exchange Mass Spectrometry: Challenges and Outlook.

Authors:  Minh H Tran; Clara T Schoeder; Kevin L Schey; Jens Meiler
Journal:  Front Immunol       Date:  2022-05-26       Impact factor: 8.786

Review 8.  Mass spectrometry for the biophysical characterization of therapeutic monoclonal antibodies.

Authors:  Hao Zhang; Weidong Cui; Michael L Gross
Journal:  FEBS Lett       Date:  2013-11-26       Impact factor: 4.124

9.  Mapping of Fab-1:VEGF Interface Using Carboxyl Group Footprinting Mass Spectrometry.

Authors:  Aaron T Wecksler; Matt S Kalo; Galahad Deperalta
Journal:  J Am Soc Mass Spectrom       Date:  2015-09-29       Impact factor: 3.109

Review 10.  Applications of hydrogen/deuterium exchange MS from 2012 to 2014.

Authors:  Gregory F Pirrone; Roxana E Iacob; John R Engen
Journal:  Anal Chem       Date:  2014-11-14       Impact factor: 6.986

  10 in total

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