Literature DB >> 23473502

Robustness of self-organizing chemoattractant field arising from precise pulse induction of its breakdown enzyme: a single-cell level analysis of PDE expression in Dictyostelium.

Noritaka Masaki1, Koichi Fujimoto, Mai Honda-Kitahara, Emi Hada, Satoshi Sawai.   

Abstract

The oscillation of chemoattractant cyclic AMP (cAMP) in Dictyostelium discoideum is a collective phenomenon that occurs when the basal level of extracellular cAMP exceeds a threshold and invokes cooperative mutual excitation of cAMP synthesis and secretion. For pulses to be relayed from cell to cell repetitively, secreted cAMP must be cleared and brought down to the subthreshold level. One of the main determinants of the oscillatory behavior is thus how much extracellular cAMP is degraded by extracellular phosphodiesterase (PDE). To date, the exact nature of PDE gene regulation remains elusive. Here, we performed live imaging analysis of mRNA transcripts for pdsA--the gene encoding extracellular PDE. Our analysis revealed that pdsA is upregulated during the rising phase of cAMP oscillations. Furthermore, by analyzing isolated cells, we show that expression of pdsA is strictly dependent on the presence of extracellular cAMP. pdsA is induced only at ∼1 nM extracellular cAMP, which is almost identical to the threshold concentration for the cAMP relay response. The observed precise regulation of PDE expression together with degradation of extracellular cAMP by PDE form a dual positive and negative feedback circuit, and model analysis shows that this sets the cAMP level near the threshold concentration for the cAMP relay response for a wide range of adenylyl cyclase activity. The overlap of the thresholds could allow oscillations of chemoattractant cAMP to self-organize at various starving conditions, making its development robust to fluctuations in its environment.
Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23473502      PMCID: PMC3870794          DOI: 10.1016/j.bpj.2013.01.023

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  53 in total

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Authors:  H Levine; I Aranson; L Tsimring; T V Truong
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-25       Impact factor: 11.205

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Authors:  Shuji Ishihara; Koichi Fujimoto; Tatsuo Shibata
Journal:  Genes Cells       Date:  2005-11       Impact factor: 1.891

3.  Genome-wide expression analyses of gene regulation during early development of Dictyostelium discoideum.

Authors:  Negin Iranfar; Danny Fuller; William F Loomis
Journal:  Eukaryot Cell       Date:  2003-08

4.  Chemoattractant-induced Ras activation during Dictyostelium aggregation.

Authors:  Helmut Kae; Chinten James Lim; George B Spiegelman; Gerald Weeks
Journal:  EMBO Rep       Date:  2004-05-14       Impact factor: 8.807

5.  DNA-mediated transformation in Dictyostelium discoideum: regulated expression of an actin gene fusion.

Authors:  W Nellen; C Silan; R A Firtel
Journal:  Mol Cell Biol       Date:  1984-12       Impact factor: 4.272

6.  The group migration of Dictyostelium cells is regulated by extracellular chemoattractant degradation.

Authors:  Gene L Garcia; Erin C Rericha; Christopher D Heger; Paul K Goldsmith; Carole A Parent
Journal:  Mol Biol Cell       Date:  2009-05-28       Impact factor: 4.138

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Authors:  Michelle Stevense; Jonathan R Chubb; Tetsuya Muramoto
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8.  A theoretical study of the effects of cyclic AMP phosphodiesterases during aggregation in Dictyostelium.

Authors:  V Nanjundiah; D Malchow
Journal:  J Cell Sci       Date:  1976-10       Impact factor: 5.285

9.  Transcriptional pulsing of a developmental gene.

Authors:  Jonathan R Chubb; Tatjana Trcek; Shailesh M Shenoy; Robert H Singer
Journal:  Curr Biol       Date:  2006-05-23       Impact factor: 10.834

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Authors:  Svetlana Surkova; Alexander V Spirov; Vitaly V Gursky; Hilde Janssens; Ah-Ram Kim; Ovidiu Radulescu; Carlos E Vanario-Alonso; David H Sharp; Maria Samsonova; John Reinitz
Journal:  PLoS Comput Biol       Date:  2009-03-13       Impact factor: 4.475

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  11 in total

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2.  Oscillation of cAMP and Ca(2+) in cardiac myocytes: a systems biology approach.

Authors:  Takehisa Kamide; Satoshi Okumura; Samik Ghosh; Yoko Shinoda; Yasumasa Mototani; Yoshiki Ohnuki; Huiling Jin; Wenqian Cai; Kenji Suita; Itaru Sato; Masanari Umemura; Takayuki Fujita; Utako Yokoyama; Motohiko Sato; Kazuharu Furutani; Hiroaki Kitano; Yoshihiro Ishikawa
Journal:  J Physiol Sci       Date:  2015-01-14       Impact factor: 2.781

3.  Cell dispersal by localized degradation of a chemoattractant.

Authors:  Richa Karmakar; Timothy Tyree; Richard H Gomer; Wouter-Jan Rappel
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4.  Fold-change detection and scale invariance of cell-cell signaling in social amoeba.

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Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-11       Impact factor: 11.205

5.  A continuum model of transcriptional bursting.

Authors:  Adam M Corrigan; Edward Tunnacliffe; Danielle Cannon; Jonathan R Chubb
Journal:  Elife       Date:  2016-02-20       Impact factor: 8.140

6.  Adenylyl cyclase A mRNA localized at the back of cells is actively translated in live chemotaxing Dictyostelium.

Authors:  Weiye Wang; Song Chen; Satarupa Das; Wolfgang Losert; Carole A Parent
Journal:  J Cell Sci       Date:  2018-05-04       Impact factor: 5.285

7.  Three-Dimensional Image of Cleavage Bodies in Nuclei Is Configured Using Gas Cluster Ion Beam with Time-of-Flight Secondary Ion Mass Spectrometry.

Authors:  Noritaka Masaki; Itsuko Ishizaki; Takahiro Hayasaka; Gregory L Fisher; Noriaki Sanada; Hideo Yokota; Mitsutoshi Setou
Journal:  Sci Rep       Date:  2015-05-11       Impact factor: 4.379

8.  Self-organization of chemoattractant waves in Dictyostelium depends on F-actin and cell-substrate adhesion.

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9.  Cell and molecular transitions during efficient dedifferentiation.

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10.  Proteomic and Transcriptomic Profiling Identifies Early Developmentally Regulated Proteins in Dictyostelium Discoideum.

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Journal:  Cells       Date:  2019-10-01       Impact factor: 6.600

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