Literature DB >> 26172740

Modeling oscillations and spiral waves in Dictyostelium populations.

Javad Noorbakhsh1, David J Schwab2,3, Allyson E Sgro2,3, Thomas Gregor2,3, Pankaj Mehta1.   

Abstract

Unicellular organisms exhibit elaborate collective behaviors in response to environmental cues. These behaviors are controlled by complex biochemical networks within individual cells and coordinated through cell-to-cell communication. Describing these behaviors requires new mathematical models that can bridge scales-from biochemical networks within individual cells to spatially structured cellular populations. Here we present a family of "multiscale" models for the emergence of spiral waves in the social amoeba Dictyostelium discoideum. Our models exploit new experimental advances that allow for the direct measurement and manipulation of the small signaling molecule cyclic adenosine monophosphate (cAMP) used by Dictyostelium cells to coordinate behavior in cellular populations. Inspired by recent experiments, we model the Dictyostelium signaling network as an excitable system coupled to various preprocessing modules. We use this family of models to study spatially unstructured populations of "fixed" cells by constructing phase diagrams that relate the properties of population-level oscillations to parameters in the underlying biochemical network. We then briefly discuss an extension of our model that includes spatial structure and show how this naturally gives rise to spiral waves. Our models exhibit a wide range of novel phenomena. including a density-dependent frequency change, bistability, and dynamic death due to slow cAMP dynamics. Our modeling approach provides a powerful tool for bridging scales in modeling of Dictyostelium populations.

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Year:  2015        PMID: 26172740      PMCID: PMC5142844          DOI: 10.1103/PhysRevE.91.062711

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  36 in total

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3.  Diverse sensitivity thresholds in dynamic signaling responses by social amoebae.

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Journal:  Proc Natl Acad Sci U S A       Date:  1997-12-09       Impact factor: 11.205

Review 5.  Multiscale modeling for biologists.

Authors:  Martin Meier-Schellersheim; Iain D C Fraser; Frederick Klauschen
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2009 Jul-Aug

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Authors:  E Pálsson; E C Cox
Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-06       Impact factor: 11.205

Review 7.  Moving in the right direction: how eukaryotic cells migrate along chemical gradients.

Authors:  Huaqing Cai; Peter N Devreotes
Journal:  Semin Cell Dev Biol       Date:  2011-07-28       Impact factor: 7.727

Review 8.  Oscillatory signaling and network responses during the development of Dictyostelium discoideum.

Authors:  Vanessa C McMains; Xin-Hua Liao; Alan R Kimmel
Journal:  Ageing Res Rev       Date:  2008-05-04       Impact factor: 10.895

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Authors:  Carole A Parent
Journal:  Curr Opin Cell Biol       Date:  2004-02       Impact factor: 8.382

Review 10.  Multi-scale computational modelling in biology and physiology.

Authors:  James Southern; Joe Pitt-Francis; Jonathan Whiteley; Daniel Stokeley; Hiromichi Kobashi; Ross Nobes; Yoshimasa Kadooka; David Gavaghan
Journal:  Prog Biophys Mol Biol       Date:  2007-08-11       Impact factor: 3.667

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  9 in total

Review 1.  Progress and perspectives in signal transduction, actin dynamics, and movement at the cell and tissue level: lessons from Dictyostelium.

Authors:  Till Bretschneider; Hans G Othmer; Cornelis J Weijer
Journal:  Interface Focus       Date:  2016-10-06       Impact factor: 3.906

2.  Spiral Wave Propagation in Communities with Spatially Correlated Heterogeneity.

Authors:  Xiaoling Zhai; Joseph W Larkin; Gürol M Süel; Andrew Mugler
Journal:  Biophys J       Date:  2020-02-26       Impact factor: 4.033

3.  Arnold tongues in oscillator systems with nonuniform spatial driving.

Authors:  Alexander Golden; Allyson E Sgro; Pankaj Mehta
Journal:  Phys Rev E       Date:  2021-04       Impact factor: 2.529

4.  Dynamics of diffusive cell signaling relays.

Authors:  Paul B Dieterle; Jiseon Min; Daniel Irimia; Ariel Amir
Journal:  Elife       Date:  2020-12-04       Impact factor: 8.140

5.  A critical-like collective state leads to long-range cell communication in Dictyostelium discoideum aggregation.

Authors:  Giovanna De Palo; Darvin Yi; Robert G Endres
Journal:  PLoS Biol       Date:  2017-04-19       Impact factor: 8.029

6.  Reactive/Less-cooperative individuals advance population's synchronization: Modeling of Dictyostelium discoideum concerted signaling during aggregation phase.

Authors:  Zahra Eidi; Najme Khorasani; Mehdi Sadeghi
Journal:  PLoS One       Date:  2021-11-18       Impact factor: 3.240

7.  Calcium responses to external mechanical stimuli in the multicellular stage of Dictyostelium discoideum.

Authors:  Hidenori Hashimura; Yusuke V Morimoto; Yusei Hirayama; Masahiro Ueda
Journal:  Sci Rep       Date:  2022-07-20       Impact factor: 4.996

8.  Collective cell migration of Dictyostelium without cAMP oscillations at multicellular stages.

Authors:  Hidenori Hashimura; Yusuke V Morimoto; Masato Yasui; Masahiro Ueda
Journal:  Commun Biol       Date:  2019-01-24

9.  Eco-evolutionary significance of "loners".

Authors:  Fernando W Rossine; Ricardo Martinez-Garcia; Allyson E Sgro; Thomas Gregor; Corina E Tarnita
Journal:  PLoS Biol       Date:  2020-03-19       Impact factor: 8.029

  9 in total

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