Literature DB >> 23470558

Assembling a COMPASS.

Jean-Francois Couture1, Georgios Skiniotis2.   

Abstract

Post-translational modifications of histone proteins lie at the heart of the epigenetic landscape in the cell's nucleus and the precise regulation of gene expression. A myriad of studies have showed that several histone-modifying enzymes are controlled by modulatory protein partner subunits and other post-transcriptional modifications deposited in the vicinity of the targeted site. All together, these mechanisms create an intricate network of interactions that regulate enzymatic activities and ultimately control the site-specific deposition of covalent modifications. In this Point-of-View, we discuss our evolving understanding on the assembly and architecture of histone H3 Lys-4 (H3K4) methyltransferase COMPASS complexes and the techniques that progressively allowed us to better define the molecular basis of complex formation and function. We further briefly discuss some of the challenges lying ahead and additional approaches required to understand mechanistic details for the function of such complexes.

Keywords:  ASH2; COMPASS; H3K4 methylation; RbBP5; SET; WDR5; chromatin modification; structural biology

Mesh:

Substances:

Year:  2013        PMID: 23470558      PMCID: PMC3674043          DOI: 10.4161/epi.24177

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  50 in total

1.  Methylation of histone H3 Lys 4 in coding regions of active genes.

Authors:  Bradley E Bernstein; Emily L Humphrey; Rachel L Erlich; Robert Schneider; Peter Bouman; Jun S Liu; Tony Kouzarides; Stuart L Schreiber
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

Review 2.  A new spin on protein dynamics.

Authors:  Linda Columbus; Wayne L Hubbell
Journal:  Trends Biochem Sci       Date:  2002-06       Impact factor: 13.807

3.  COMPASS, a histone H3 (Lysine 4) methyltransferase required for telomeric silencing of gene expression.

Authors:  Nevan J Krogan; Jim Dover; Shahram Khorrami; Jack F Greenblatt; Jessica Schneider; Mark Johnston; Ali Shilatifard
Journal:  J Biol Chem       Date:  2002-01-22       Impact factor: 5.157

4.  Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae.

Authors:  S D Briggs; M Bryk; B D Strahl; W L Cheung; J K Davie; S Y Dent; F Winston; C D Allis
Journal:  Genes Dev       Date:  2001-12-15       Impact factor: 11.361

5.  A trithorax-group complex purified from Saccharomyces cerevisiae is required for methylation of histone H3.

Authors:  Peter L Nagy; Joachim Griesenbeck; Roger D Kornberg; Michael L Cleary
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-18       Impact factor: 11.205

6.  A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae.

Authors:  P Uetz; L Giot; G Cagney; T A Mansfield; R S Judson; J R Knight; D Lockshon; V Narayan; M Srinivasan; P Pochart; A Qureshi-Emili; Y Li; B Godwin; D Conover; T Kalbfleisch; G Vijayadamodar; M Yang; M Johnston; S Fields; J M Rothberg
Journal:  Nature       Date:  2000-02-10       Impact factor: 49.962

7.  COMPASS: a complex of proteins associated with a trithorax-related SET domain protein.

Authors:  T Miller; N J Krogan; J Dover; H Erdjument-Bromage; P Tempst; M Johnston; J F Greenblatt; A Shilatifard
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-30       Impact factor: 11.205

8.  The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4.

Authors:  A Roguev; D Schaft; A Shevchenko; W W Pijnappel; M Wilm; R Aasland; A F Stewart
Journal:  EMBO J       Date:  2001-12-17       Impact factor: 11.598

9.  Leukemia proto-oncoprotein MLL forms a SET1-like histone methyltransferase complex with menin to regulate Hox gene expression.

Authors:  Akihiko Yokoyama; Zhong Wang; Joanna Wysocka; Mrinmoy Sanyal; Deborah J Aufiero; Issay Kitabayashi; Winship Herr; Michael L Cleary
Journal:  Mol Cell Biol       Date:  2004-07       Impact factor: 4.272

10.  Protein structure change studied by hydrogen-deuterium exchange, functional labeling, and mass spectrometry.

Authors:  Joan J Englander; Charyl Del Mar; Will Li; S Walter Englander; Jack S Kim; David D Stranz; Yoshitomo Hamuro; Virgil L Woods
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-28       Impact factor: 11.205

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  13 in total

1.  Molecular basis for DPY-30 association to COMPASS-like and NURF complexes.

Authors:  Véronique Tremblay; Pamela Zhang; Chandra-Prakash Chaturvedi; Janet Thornton; Joseph S Brunzelle; Georgios Skiniotis; Ali Shilatifard; Marjorie Brand; Jean-François Couture
Journal:  Structure       Date:  2014-11-20       Impact factor: 5.006

2.  WDR5 regulates left-right patterning via chromatin-dependent and -independent functions.

Authors:  Saurabh S Kulkarni; Mustafa K Khokha
Journal:  Development       Date:  2018-11-28       Impact factor: 6.868

3.  Structure and Conformational Dynamics of a COMPASS Histone H3K4 Methyltransferase Complex.

Authors:  Qianhui Qu; Yoh-Hei Takahashi; Yidai Yang; Hongli Hu; Yan Zhang; Joseph S Brunzelle; Jean-Francois Couture; Ali Shilatifard; Georgios Skiniotis
Journal:  Cell       Date:  2018-08-09       Impact factor: 41.582

Review 4.  Histone target selection within chromatin: an exemplary case of teamwork.

Authors:  Marie-Eve Lalonde; Xue Cheng; Jacques Côté
Journal:  Genes Dev       Date:  2014-05-15       Impact factor: 11.361

5.  A phosphorylation switch on RbBP5 regulates histone H3 Lys4 methylation.

Authors:  Pamela Zhang; Chandra-Prakash Chaturvedi; Veronique Tremblay; Myriam Cramet; Joseph S Brunzelle; Georgios Skiniotis; Marjorie Brand; Ali Shilatifard; Jean-François Couture
Journal:  Genes Dev       Date:  2015-01-15       Impact factor: 11.361

Review 6.  Modes of Interaction of KMT2 Histone H3 Lysine 4 Methyltransferase/COMPASS Complexes with Chromatin.

Authors:  Agnieszka Bochyńska; Juliane Lüscher-Firzlaff; Bernhard Lüscher
Journal:  Cells       Date:  2018-03-02       Impact factor: 6.600

7.  Architecture and subunit arrangement of the complete Saccharomyces cerevisiae COMPASS complex.

Authors:  Yanxing Wang; Zhanyu Ding; Xiangyang Liu; Yu Bao; Min Huang; Catherine C L Wong; Xiaoyu Hong; Yao Cong
Journal:  Sci Rep       Date:  2018-11-27       Impact factor: 4.379

8.  The MLL1 trimeric catalytic complex is a dynamic conformational ensemble stabilized by multiple weak interactions.

Authors:  Lilia Kaustov; Alexander Lemak; Hong Wu; Marco Faini; Lixin Fan; Xianyang Fang; Hong Zeng; Shili Duan; Abdellah Allali-Hassani; Fengling Li; Yong Wei; Masoud Vedadi; Ruedi Aebersold; Yunxing Wang; Scott Houliston; Cheryl H Arrowsmith
Journal:  Nucleic Acids Res       Date:  2019-09-26       Impact factor: 16.971

9.  Evolving Catalytic Properties of the MLL Family SET Domain.

Authors:  Ying Zhang; Anshumali Mittal; James Reid; Stephanie Reich; Steven J Gamblin; Jon R Wilson
Journal:  Structure       Date:  2015-08-27       Impact factor: 5.006

10.  The internal interaction in RBBP5 regulates assembly and activity of MLL1 methyltransferase complex.

Authors:  Jianming Han; Tingting Li; Yanjing Li; Muchun Li; Xiaoman Wang; Chao Peng; Chen Su; Na Li; Yiwen Li; Ying Xu; Yong Chen
Journal:  Nucleic Acids Res       Date:  2019-11-04       Impact factor: 16.971

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