Literature DB >> 23468814

Piperidine-1-carboxamidinium ethyl carbonate.

Ioannis Tiritiris1.   

Abstract

In the title salt, C6H14N3(+)·C3H5O3(-), the C-N bond lengths in the central CN3 unit of the carboxamidinium cation are 1.3262 (18), 1.3359 (18) and 1.3498 (18) Å, indicating partial double-bond character. The central C atom is bonded to the three N atoms in a nearly ideal trigonal-planar geometry and the positive charge is delocalized in the CN3 plane. The piperidine ring is in a chair conformation. The C-O bond lengths in the ethyl carbonate anion are characteristic for a delocalized double bond and a typical single bond. In the crystal, N-H⋯O hydrogen bonds between cations and anions generate a two-dimensional network in the direction of the ab plane, whereas adjacent ion pairs form chains running along the b axis.

Entities:  

Year:  2012        PMID: 23468814      PMCID: PMC3588849          DOI: 10.1107/S1600536812045497

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and crystal structures of guanidinium hydrogencarbonates, see: Tiritiris et al. (2011 ▶). For the crystal structure of piperidine-1-carboximidamide, see: Tiritiris (2012 ▶), and for the crystal structure of sodium methyl carbonate, see: Kunert et al. (1998 ▶).

Experimental

Crystal data

C6H14N3C3H5O3 M = 217.27 Monoclinic, a = 11.8320 (6) Å b = 7.2407 (4) Å c = 13.3755 (9) Å β = 105.292 (3)° V = 1105.33 (11) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.25 × 0.20 × 0.05 mm

Data collection

Bruker–Nonius KappaCCD diffractometer 4452 measured reflections 2638 independent reflections 1982 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.106 S = 1.02 2638 reflections 153 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.23 e Å−3 Data collection: COLLECT (Hooft, 2004 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812045497/kp2439sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812045497/kp2439Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H14N3+·C3H5O3F(000) = 472
Mr = 217.27Dx = 1.306 Mg m3
Monoclinic, P21/nMelting point: 397 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 11.8320 (6) ÅCell parameters from 2732 reflections
b = 7.2407 (4) Åθ = 0.4–27.9°
c = 13.3755 (9) ŵ = 0.10 mm1
β = 105.292 (3)°T = 100 K
V = 1105.33 (11) Å3Plate, colourless
Z = 40.25 × 0.20 × 0.05 mm
Bruker–Nonius KappaCCD diffractometer1982 reflections with I > 2σ(I)
Radiation source: sealed tubeRint = 0.047
Graphite monochromatorθmax = 27.9°, θmin = 2.1°
φ scans, and ω scansh = −15→15
4452 measured reflectionsk = −9→8
2638 independent reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: difference Fourier map
wR(F2) = 0.106H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0412P)2 + 0.424P] where P = (Fo2 + 2Fc2)/3
2638 reflections(Δ/σ)max < 0.001
153 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1−0.01610 (11)0.84504 (19)0.10282 (10)0.0182 (3)
H110.0373 (17)0.810 (3)0.0712 (16)0.030 (5)*
H12−0.0527 (16)0.949 (3)0.0829 (15)0.029 (5)*
N2−0.11973 (10)0.83590 (18)0.22402 (10)0.0162 (3)
H21−0.1508 (14)0.936 (3)0.1994 (14)0.019 (4)*
H22−0.1552 (15)0.779 (3)0.2649 (15)0.023 (5)*
N30.01511 (10)0.60093 (16)0.22039 (9)0.0140 (2)
C1−0.04041 (11)0.75874 (19)0.18211 (11)0.0138 (3)
C2−0.02711 (12)0.4939 (2)0.29709 (11)0.0163 (3)
H2A−0.09690.42140.26100.020*
H2B−0.05080.57980.34550.020*
C30.06700 (13)0.3636 (2)0.35824 (11)0.0192 (3)
H3A0.13220.43690.40190.023*
H3B0.03380.28660.40460.023*
C40.11384 (13)0.2397 (2)0.28736 (12)0.0191 (3)
H4A0.04980.16320.24460.023*
H4B0.17480.15640.32880.023*
C50.16564 (13)0.3613 (2)0.21824 (12)0.0219 (3)
H5A0.23200.43260.26170.026*
H5B0.19630.28250.17090.026*
C60.07529 (12)0.4939 (2)0.15493 (11)0.0188 (3)
H6A0.11440.58050.11750.023*
H6B0.01630.42320.10270.023*
O10.25289 (8)0.31135 (14)0.63820 (8)0.0173 (2)
O20.36182 (9)0.34098 (15)0.52507 (8)0.0210 (2)
O30.26553 (8)0.08408 (14)0.52492 (8)0.0175 (2)
C70.29380 (11)0.2563 (2)0.56646 (11)0.0144 (3)
C80.18221 (12)−0.0237 (2)0.56032 (11)0.0169 (3)
H8A0.10790.04510.55110.020*
H8B0.2132−0.05480.63460.020*
C90.16276 (14)−0.1971 (2)0.49492 (12)0.0232 (3)
H9A0.1235−0.16520.42290.035*
H9B0.1137−0.28320.52150.035*
H9C0.2384−0.25510.49800.035*
U11U22U33U12U13U23
N10.0210 (6)0.0191 (6)0.0183 (6)0.0056 (5)0.0120 (5)0.0059 (5)
N20.0193 (6)0.0147 (6)0.0175 (6)0.0039 (5)0.0100 (5)0.0048 (5)
N30.0151 (5)0.0161 (6)0.0124 (5)0.0021 (4)0.0064 (4)0.0022 (5)
C10.0155 (6)0.0145 (6)0.0115 (6)−0.0020 (5)0.0037 (5)−0.0012 (5)
C20.0177 (6)0.0194 (7)0.0141 (7)0.0018 (6)0.0086 (5)0.0035 (6)
C30.0228 (7)0.0207 (7)0.0154 (7)0.0043 (6)0.0072 (6)0.0048 (6)
C40.0243 (7)0.0145 (7)0.0207 (7)0.0026 (6)0.0098 (6)0.0027 (6)
C50.0232 (7)0.0229 (8)0.0240 (8)0.0081 (6)0.0137 (6)0.0062 (6)
C60.0229 (7)0.0206 (7)0.0168 (7)0.0060 (6)0.0122 (6)0.0028 (6)
O10.0201 (5)0.0178 (5)0.0171 (5)−0.0018 (4)0.0104 (4)−0.0027 (4)
O20.0244 (5)0.0221 (6)0.0209 (5)−0.0078 (4)0.0139 (4)−0.0052 (4)
O30.0188 (5)0.0184 (5)0.0181 (5)−0.0050 (4)0.0099 (4)−0.0041 (4)
C70.0123 (6)0.0181 (7)0.0131 (7)0.0006 (5)0.0037 (5)−0.0003 (5)
C80.0169 (6)0.0186 (7)0.0174 (7)−0.0021 (5)0.0081 (6)−0.0004 (6)
C90.0250 (7)0.0238 (8)0.0241 (8)−0.0083 (6)0.0121 (6)−0.0052 (7)
N1—C11.3262 (18)C4—H4B0.9900
N1—H110.88 (2)C5—C61.518 (2)
N1—H120.88 (2)C5—H5A0.9900
N2—C11.3359 (18)C5—H5B0.9900
N2—H210.84 (2)C6—H6A0.9900
N2—H220.87 (2)C6—H6B0.9900
N3—C11.3498 (18)O1—C71.2485 (16)
N3—C21.4742 (17)O2—C71.2509 (17)
N3—C61.4842 (17)O3—C71.3706 (18)
C2—C31.5227 (19)O3—C81.4323 (16)
C2—H2A0.9900C8—C91.512 (2)
C2—H2B0.9900C8—H8A0.9900
C3—C41.512 (2)C8—H8B0.9900
C3—H3A0.9900C9—H9A0.9800
C3—H3B0.9900C9—H9B0.9800
C4—C51.518 (2)C9—H9C0.9800
C4—H4A0.9900
C1—N1—H11125.4 (13)H4A—C4—H4B108.4
C1—N1—H12117.1 (12)C6—C5—C4111.62 (12)
H11—N1—H12117.4 (18)C6—C5—H5A109.3
C1—N2—H21118.6 (11)C4—C5—H5A109.3
C1—N2—H22125.0 (12)C6—C5—H5B109.3
H21—N2—H22114.7 (16)C4—C5—H5B109.3
C1—N3—C2119.25 (11)H5A—C5—H5B108.0
C1—N3—C6118.65 (11)N3—C6—C5112.21 (11)
C2—N3—C6116.07 (11)N3—C6—H6A109.2
N1—C1—N2117.59 (13)C5—C6—H6A109.2
N1—C1—N3121.04 (12)N3—C6—H6B109.2
N2—C1—N3121.36 (12)C5—C6—H6B109.2
N3—C2—C3111.43 (10)H6A—C6—H6B107.9
N3—C2—H2A109.3C7—O3—C8118.52 (10)
C3—C2—H2A109.3O1—C7—O2127.52 (13)
N3—C2—H2B109.3O1—C7—O3119.95 (12)
C3—C2—H2B109.3O2—C7—O3112.53 (12)
H2A—C2—H2B108.0O3—C8—C9105.90 (11)
C4—C3—C2111.57 (12)O3—C8—H8A110.6
C4—C3—H3A109.3C9—C8—H8A110.6
C2—C3—H3A109.3O3—C8—H8B110.6
C4—C3—H3B109.3C9—C8—H8B110.6
C2—C3—H3B109.3H8A—C8—H8B108.7
H3A—C3—H3B108.0C8—C9—H9A109.5
C3—C4—C5108.14 (12)C8—C9—H9B109.5
C3—C4—H4A110.1H9A—C9—H9B109.5
C5—C4—H4A110.1C8—C9—H9C109.5
C3—C4—H4B110.1H9A—C9—H9C109.5
C5—C4—H4B110.1H9B—C9—H9C109.5
C2—N3—C1—N1−170.39 (13)C3—C4—C5—C6−58.57 (17)
C6—N3—C1—N1−18.76 (19)C1—N3—C6—C5160.64 (12)
C2—N3—C1—N211.15 (19)C2—N3—C6—C5−46.85 (16)
C6—N3—C1—N2162.78 (13)C4—C5—C6—N352.04 (17)
C1—N3—C2—C3−160.06 (12)C8—O3—C7—O14.51 (19)
C6—N3—C2—C347.59 (16)C8—O3—C7—O2−175.98 (12)
N3—C2—C3—C4−54.20 (16)C7—O3—C8—C9175.66 (12)
C2—C3—C4—C559.74 (16)
D—H···AD—HH···AD···AD—H···A
N1—H11···O2i0.88 (2)1.99 (2)2.812 (1)155 (1)
N1—H12···O2ii0.88 (2)1.88 (2)2.747 (1)173 (1)
N2—H21···O1ii0.84 (2)2.19 (2)3.033 (1)175 (1)
N2—H22···O1iii0.87 (2)2.06 (2)2.923 (1)170 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H11⋯O2i 0.88 (2)1.99 (2)2.812 (1)155 (1)
N1—H12⋯O2ii 0.88 (2)1.88 (2)2.747 (1)173 (1)
N2—H21⋯O1ii 0.84 (2)2.19 (2)3.033 (1)175 (1)
N2—H22⋯O1iii 0.87 (2)2.06 (2)2.923 (1)170 (1)

Symmetry codes: (i) ; (ii) ; (iii) .

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