| Literature DB >> 23284550 |
Abstract
In the title compound, C(6)H(13)N(3), the C=N and C-N bond lengths in the CN(3) unit are 1.3090 (17), and 1.3640 (17) (C-NH(2)) and 1.3773 (16) Å, indicating double- and single-bond character, respectively. The N-C-N angles are 116.82 (12), 119.08 (11) and 124.09 (11)°, showing a deviation of the CN(3) plane from an ideal trigonal-planar geometry. The piperidine ring is in a chair conformation. In the crystal, mol-ecules are linked by N-H⋯N hydrogen bonds, forming a two-dimensional network along the ac plane.Entities:
Year: 2012 PMID: 23284550 PMCID: PMC3515330 DOI: 10.1107/S1600536812044467
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H13N3 | |
| Monoclinic, | Melting point: 409 K |
| Hall symbol: -P 2ybc | Cu |
| Cell parameters from 4190 reflections | |
| θ = 3.6–73.5° | |
| µ = 0.60 mm−1 | |
| β = 91.887 (4)° | |
| Plate, colorless | |
| 0.45 × 0.26 × 0.06 mm |
| Bruker Kappa APEXII DUO diffractometer | 1413 independent reflections |
| Radiation source: sealed tube | 1116 reflections with |
| Graphite monochromator | |
| φ scans, and ω scans | θmax = 73.5°, θmin = 3.6° |
| Absorption correction: multi-scan (Blessing, 1995) | |
| 4190 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1413 reflections | (Δ/σ)max < 0.001 |
| 94 parameters | Δρmax = 0.19 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.38570 (11) | 0.2272 (2) | 0.20721 (12) | 0.0194 (3) | |
| N1 | 0.41982 (10) | 0.26476 (18) | 0.32513 (11) | 0.0229 (3) | |
| H11 | 0.4665 (14) | 0.393 (3) | 0.3256 (16) | 0.031 (4)* | |
| N2 | 0.40843 (11) | 0.37432 (19) | 0.10763 (12) | 0.0248 (3) | |
| H21 | 0.4040 (14) | 0.315 (3) | 0.0240 (18) | 0.037 (4)* | |
| H22 | 0.4598 (14) | 0.497 (3) | 0.1251 (15) | 0.035 (4)* | |
| N3 | 0.32466 (10) | 0.02529 (17) | 0.17918 (10) | 0.0225 (3) | |
| C2 | 0.25890 (12) | −0.0007 (2) | 0.06138 (13) | 0.0270 (4) | |
| H2A | 0.2591 | −0.1706 | 0.0341 | 0.032* | |
| H2B | 0.2915 | 0.0964 | −0.0067 | 0.032* | |
| C3 | 0.14128 (12) | 0.0807 (2) | 0.08029 (14) | 0.0279 (4) | |
| H3A | 0.1403 | 0.2540 | 0.1006 | 0.034* | |
| H3B | 0.0972 | 0.0553 | 0.0005 | 0.034* | |
| C4 | 0.09150 (13) | −0.0602 (2) | 0.18847 (14) | 0.0275 (3) | |
| H4A | 0.0179 | 0.0040 | 0.2054 | 0.033* | |
| H4B | 0.0833 | −0.2304 | 0.1631 | 0.033* | |
| C5 | 0.16364 (12) | −0.0434 (2) | 0.30906 (14) | 0.0273 (4) | |
| H5A | 0.1341 | −0.1493 | 0.3754 | 0.033* | |
| H5B | 0.1629 | 0.1231 | 0.3416 | 0.033* | |
| C6 | 0.28172 (12) | −0.1171 (2) | 0.28289 (13) | 0.0246 (3) | |
| H6A | 0.3282 | −0.0937 | 0.3610 | 0.030* | |
| H6B | 0.2837 | −0.2892 | 0.2600 | 0.030* |
| C1 | 0.0203 (7) | 0.0167 (6) | 0.0211 (7) | 0.0021 (4) | 0.0004 (5) | −0.0011 (4) |
| N1 | 0.0271 (7) | 0.0187 (5) | 0.0228 (6) | −0.0023 (4) | −0.0013 (5) | −0.0015 (4) |
| N2 | 0.0335 (7) | 0.0211 (5) | 0.0196 (6) | −0.0053 (5) | −0.0011 (5) | −0.0009 (4) |
| N3 | 0.0256 (7) | 0.0203 (5) | 0.0214 (6) | −0.0032 (4) | −0.0036 (5) | 0.0001 (4) |
| C2 | 0.0329 (9) | 0.0261 (6) | 0.0218 (7) | −0.0065 (5) | −0.0021 (6) | −0.0037 (5) |
| C3 | 0.0309 (9) | 0.0274 (6) | 0.0249 (8) | −0.0016 (6) | −0.0091 (6) | 0.0017 (5) |
| C4 | 0.0261 (8) | 0.0268 (7) | 0.0295 (8) | 0.0009 (5) | −0.0013 (6) | −0.0002 (5) |
| C5 | 0.0313 (9) | 0.0251 (6) | 0.0254 (8) | −0.0022 (5) | 0.0012 (6) | 0.0016 (5) |
| C6 | 0.0292 (8) | 0.0197 (6) | 0.0247 (7) | −0.0019 (5) | −0.0040 (6) | 0.0048 (5) |
| C1—N1 | 1.3090 (17) | C3—C4 | 1.5235 (19) |
| C1—N2 | 1.3640 (17) | C3—H3A | 0.9900 |
| C1—N3 | 1.3773 (16) | C3—H3B | 0.9900 |
| N1—H11 | 0.913 (17) | C4—C5 | 1.521 (2) |
| N2—H21 | 0.937 (18) | C4—H4A | 0.9900 |
| N2—H22 | 0.943 (17) | C4—H4B | 0.9900 |
| N3—C6 | 1.4585 (17) | C5—C6 | 1.534 (2) |
| N3—C2 | 1.4587 (17) | C5—H5A | 0.9900 |
| C2—C3 | 1.526 (2) | C5—H5B | 0.9900 |
| C2—H2A | 0.9900 | C6—H6A | 0.9900 |
| C2—H2B | 0.9900 | C6—H6B | 0.9900 |
| N1—C1—N2 | 124.09 (11) | C2—C3—H3B | 109.6 |
| N1—C1—N3 | 119.08 (11) | H3A—C3—H3B | 108.2 |
| N2—C1—N3 | 116.82 (12) | C5—C4—C3 | 110.67 (12) |
| C1—N1—H11 | 108.1 (11) | C5—C4—H4A | 109.5 |
| C1—N2—H21 | 119.8 (10) | C3—C4—H4A | 109.5 |
| C1—N2—H22 | 116.1 (10) | C5—C4—H4B | 109.5 |
| H21—N2—H22 | 117.2 (14) | C3—C4—H4B | 109.5 |
| C1—N3—C6 | 119.46 (11) | H4A—C4—H4B | 108.1 |
| C1—N3—C2 | 122.78 (10) | C4—C5—C6 | 110.95 (12) |
| C6—N3—C2 | 112.09 (10) | C4—C5—H5A | 109.4 |
| N3—C2—C3 | 110.80 (11) | C6—C5—H5A | 109.4 |
| N3—C2—H2A | 109.5 | C4—C5—H5B | 109.4 |
| C3—C2—H2A | 109.5 | C6—C5—H5B | 109.4 |
| N3—C2—H2B | 109.5 | H5A—C5—H5B | 108.0 |
| C3—C2—H2B | 109.5 | N3—C6—C5 | 110.55 (11) |
| H2A—C2—H2B | 108.1 | N3—C6—H6A | 109.5 |
| C4—C3—C2 | 110.12 (11) | C5—C6—H6A | 109.5 |
| C4—C3—H3A | 109.6 | N3—C6—H6B | 109.5 |
| C2—C3—H3A | 109.6 | C5—C6—H6B | 109.5 |
| C4—C3—H3B | 109.6 | H6A—C6—H6B | 108.1 |
| N1—C1—N3—C6 | 11.63 (18) | N3—C2—C3—C4 | −56.89 (14) |
| N2—C1—N3—C6 | −169.57 (11) | C2—C3—C4—C5 | 53.91 (15) |
| N1—C1—N3—C2 | 162.94 (12) | C3—C4—C5—C6 | −53.30 (14) |
| N2—C1—N3—C2 | −18.25 (18) | C1—N3—C6—C5 | 95.35 (14) |
| C1—N3—C2—C3 | −93.09 (14) | C2—N3—C6—C5 | −58.83 (14) |
| C6—N3—C2—C3 | 60.10 (13) | C4—C5—C6—N3 | 55.17 (13) |
| H··· | ||||
| N2—H21···N1i | 0.94 (2) | 2.15 (2) | 3.071 (1) | 168 (1) |
| N2—H22···N1ii | 0.94 (2) | 2.15 (2) | 3.090 (1) | 177 (1) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H21⋯N1i | 0.94 (2) | 2.15 (2) | 3.071 (1) | 168 (1) |
| N2—H22⋯N1ii | 0.94 (2) | 2.15 (2) | 3.090 (1) | 177 (1) |
Symmetry codes: (i) ; (ii) .