| Literature DB >> 23476249 |
Abstract
The asymmetric unit of the title salt, C5Entities:
Year: 2012 PMID: 23476249 PMCID: PMC3589013 DOI: 10.1107/S1600536812046922
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H12N3O+·C3H5O3− | |
| Monoclinic, | Melting point: 413 K |
| Hall symbol: -P 2yn | Mo |
| Cell parameters from 5142 reflections | |
| θ = 0.4–28.3° | |
| µ = 0.11 mm−1 | |
| β = 109.505 (2)° | |
| Block, colourless | |
| 0.30 × 0.25 × 0.15 mm |
| Bruker–Nonius KappaCCD diffractometer | 2981 reflections with |
| Radiation source: sealed tube | |
| Graphite monochromator | θmax = 28.3°, θmin = 2.3° |
| φ scans, and ω scans | |
| 9902 measured reflections | |
| 5199 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 5199 reflections | (Δ/σ)max < 0.001 |
| 305 parameters | Δρmax = 0.25 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.14782 (18) | 0.19683 (9) | 0.08078 (17) | 0.0138 (4) | |
| N1 | 0.14407 (18) | 0.21777 (9) | −0.03987 (16) | 0.0186 (4) | |
| H11 | 0.082 (2) | 0.2060 (11) | −0.111 (2) | 0.027 (6)* | |
| H12 | 0.209 (2) | 0.2468 (11) | −0.039 (2) | 0.028 (6)* | |
| N2 | 0.24717 (16) | 0.21987 (9) | 0.18879 (16) | 0.0168 (4) | |
| H21 | 0.2567 (18) | 0.2083 (9) | 0.269 (2) | 0.013 (5)* | |
| H22 | 0.308 (2) | 0.2486 (11) | 0.171 (2) | 0.032 (6)* | |
| N3 | 0.05782 (14) | 0.15198 (8) | 0.09382 (13) | 0.0138 (3) | |
| C2 | 0.04415 (18) | 0.14053 (10) | 0.22786 (16) | 0.0174 (4) | |
| H2A | −0.0106 | 0.1755 | 0.2491 | 0.021* | |
| H2B | 0.1374 | 0.1404 | 0.2982 | 0.021* | |
| C3 | −0.02671 (19) | 0.07728 (10) | 0.22976 (17) | 0.0239 (5) | |
| H3A | 0.0343 | 0.0421 | 0.2203 | 0.029* | |
| H3B | −0.0410 | 0.0721 | 0.3182 | 0.029* | |
| O1 | −0.15763 (13) | 0.07261 (7) | 0.12343 (12) | 0.0227 (3) | |
| C4 | −0.13597 (19) | 0.07748 (10) | −0.00376 (17) | 0.0194 (4) | |
| H4A | −0.2261 | 0.0727 | −0.0777 | 0.023* | |
| H4B | −0.0746 | 0.0422 | −0.0120 | 0.023* | |
| C5 | −0.07145 (18) | 0.14066 (9) | −0.01951 (17) | 0.0168 (4) | |
| H5A | −0.0515 | 0.1408 | −0.1058 | 0.020* | |
| H5B | −0.1379 | 0.1757 | −0.0233 | 0.020* | |
| C6 | 0.61678 (17) | 0.19115 (9) | 0.08546 (16) | 0.0122 (4) | |
| N4 | 0.60204 (17) | 0.21566 (9) | −0.03589 (15) | 0.0161 (4) | |
| H41 | 0.656 (2) | 0.2472 (11) | −0.038 (2) | 0.026 (6)* | |
| H42 | 0.533 (2) | 0.2013 (12) | −0.113 (2) | 0.041 (7)* | |
| N5 | 0.71439 (16) | 0.21538 (8) | 0.19268 (15) | 0.0144 (4) | |
| H51 | 0.773 (2) | 0.2459 (11) | 0.185 (2) | 0.023 (6)* | |
| H52 | 0.745 (2) | 0.1933 (11) | 0.271 (2) | 0.035 (6)* | |
| N6 | 0.53305 (14) | 0.14360 (7) | 0.10007 (13) | 0.0134 (3) | |
| C7 | 0.56842 (19) | 0.11205 (10) | 0.23299 (16) | 0.0176 (4) | |
| H7A | 0.5906 | 0.1449 | 0.3053 | 0.021* | |
| H7B | 0.6517 | 0.0850 | 0.2480 | 0.021* | |
| C8 | 0.4493 (2) | 0.07110 (10) | 0.24096 (17) | 0.0189 (4) | |
| H8A | 0.4791 | 0.0472 | 0.3277 | 0.023* | |
| H8B | 0.3709 | 0.0991 | 0.2401 | 0.023* | |
| O2 | 0.40359 (13) | 0.02701 (6) | 0.13163 (11) | 0.0198 (3) | |
| C9 | 0.35206 (18) | 0.06230 (10) | 0.00799 (17) | 0.0182 (4) | |
| H9A | 0.2758 | 0.0907 | 0.0117 | 0.022* | |
| H9B | 0.3137 | 0.0321 | −0.0684 | 0.022* | |
| C10 | 0.46389 (18) | 0.10203 (9) | −0.01694 (17) | 0.0169 (4) | |
| H10A | 0.5335 | 0.0734 | −0.0341 | 0.020* | |
| H10B | 0.4226 | 0.1288 | −0.0986 | 0.020* | |
| C11 | −0.07231 (18) | 0.16716 (9) | 0.57058 (16) | 0.0133 (4) | |
| O3 | −0.16622 (12) | 0.18499 (7) | 0.46539 (11) | 0.0196 (3) | |
| O4 | −0.04966 (12) | 0.18664 (6) | 0.68830 (11) | 0.0179 (3) | |
| O5 | 0.01060 (12) | 0.11991 (7) | 0.54704 (11) | 0.0181 (3) | |
| C12 | 0.12224 (18) | 0.09664 (10) | 0.66226 (17) | 0.0188 (4) | |
| H12A | 0.0849 | 0.0761 | 0.7281 | 0.023* | |
| H12B | 0.1836 | 0.1324 | 0.7081 | 0.023* | |
| C13 | 0.20159 (19) | 0.04887 (10) | 0.60972 (18) | 0.0224 (5) | |
| H13A | 0.2355 | 0.0695 | 0.5427 | 0.034* | |
| H13B | 0.1405 | 0.0131 | 0.5671 | 0.034* | |
| H13C | 0.2806 | 0.0328 | 0.6851 | 0.034* | |
| C14 | 0.40406 (17) | 0.17608 (9) | 0.57044 (16) | 0.0130 (4) | |
| O6 | 0.31041 (12) | 0.19554 (6) | 0.46676 (11) | 0.0180 (3) | |
| O7 | 0.42103 (13) | 0.19133 (6) | 0.69029 (11) | 0.0183 (3) | |
| O8 | 0.49287 (12) | 0.13310 (6) | 0.54411 (11) | 0.0166 (3) | |
| C15 | 0.60379 (18) | 0.10913 (10) | 0.65905 (17) | 0.0179 (4) | |
| H15A | 0.5655 | 0.0877 | 0.7232 | 0.021* | |
| H15B | 0.6641 | 0.1448 | 0.7070 | 0.021* | |
| C16 | 0.68612 (19) | 0.06219 (10) | 0.60715 (18) | 0.0199 (4) | |
| H16A | 0.6270 | 0.0257 | 0.5651 | 0.030* | |
| H16B | 0.7659 | 0.0470 | 0.6828 | 0.030* | |
| H16C | 0.7190 | 0.0833 | 0.5398 | 0.030* |
| C1 | 0.0137 (9) | 0.0140 (11) | 0.0127 (9) | 0.0045 (8) | 0.0031 (7) | 0.0005 (7) |
| N1 | 0.0180 (9) | 0.0236 (10) | 0.0114 (8) | −0.0068 (8) | 0.0011 (7) | 0.0008 (7) |
| N2 | 0.0189 (9) | 0.0223 (10) | 0.0080 (8) | −0.0050 (7) | 0.0031 (7) | 0.0016 (7) |
| N3 | 0.0118 (7) | 0.0192 (9) | 0.0088 (7) | −0.0017 (7) | 0.0012 (6) | −0.0003 (6) |
| C2 | 0.0178 (9) | 0.0251 (12) | 0.0085 (8) | −0.0042 (8) | 0.0033 (7) | −0.0007 (8) |
| C3 | 0.0261 (11) | 0.0301 (13) | 0.0102 (9) | −0.0091 (9) | −0.0011 (8) | 0.0013 (8) |
| O1 | 0.0251 (7) | 0.0279 (9) | 0.0138 (6) | −0.0121 (6) | 0.0048 (5) | −0.0029 (6) |
| C4 | 0.0217 (10) | 0.0216 (12) | 0.0130 (9) | −0.0007 (9) | 0.0032 (8) | −0.0024 (8) |
| C5 | 0.0148 (9) | 0.0201 (11) | 0.0115 (8) | −0.0027 (8) | −0.0007 (7) | 0.0001 (8) |
| C6 | 0.0143 (9) | 0.0123 (10) | 0.0107 (9) | 0.0040 (8) | 0.0051 (7) | −0.0004 (7) |
| N4 | 0.0166 (8) | 0.0182 (10) | 0.0107 (8) | −0.0043 (8) | 0.0009 (7) | 0.0016 (7) |
| N5 | 0.0164 (8) | 0.0145 (10) | 0.0103 (8) | −0.0029 (7) | 0.0018 (6) | 0.0000 (6) |
| N6 | 0.0158 (8) | 0.0148 (9) | 0.0083 (7) | −0.0017 (7) | 0.0023 (6) | −0.0007 (6) |
| C7 | 0.0218 (10) | 0.0185 (11) | 0.0105 (9) | −0.0053 (8) | 0.0027 (7) | 0.0016 (7) |
| C8 | 0.0268 (10) | 0.0179 (12) | 0.0125 (9) | −0.0045 (9) | 0.0074 (8) | −0.0022 (8) |
| O2 | 0.0281 (7) | 0.0145 (8) | 0.0147 (6) | −0.0057 (6) | 0.0043 (5) | −0.0011 (5) |
| C9 | 0.0187 (10) | 0.0187 (12) | 0.0137 (9) | −0.0021 (8) | 0.0006 (7) | 0.0008 (8) |
| C10 | 0.0200 (10) | 0.0167 (11) | 0.0117 (8) | −0.0022 (8) | 0.0025 (7) | −0.0013 (7) |
| C11 | 0.0130 (9) | 0.0173 (11) | 0.0095 (9) | −0.0009 (8) | 0.0037 (7) | 0.0013 (7) |
| O3 | 0.0191 (7) | 0.0258 (9) | 0.0101 (6) | 0.0043 (6) | −0.0001 (5) | 0.0003 (5) |
| O4 | 0.0183 (7) | 0.0231 (8) | 0.0102 (6) | 0.0030 (6) | 0.0020 (5) | −0.0016 (5) |
| O5 | 0.0175 (7) | 0.0238 (8) | 0.0108 (6) | 0.0056 (6) | 0.0016 (5) | −0.0002 (5) |
| C12 | 0.0167 (10) | 0.0226 (12) | 0.0138 (9) | 0.0045 (8) | 0.0007 (7) | 0.0022 (8) |
| C13 | 0.0234 (10) | 0.0219 (12) | 0.0211 (10) | 0.0027 (9) | 0.0064 (8) | 0.0014 (8) |
| C14 | 0.0131 (9) | 0.0131 (11) | 0.0116 (9) | −0.0027 (8) | 0.0027 (7) | 0.0001 (7) |
| O6 | 0.0179 (7) | 0.0231 (8) | 0.0101 (6) | 0.0050 (6) | 0.0010 (5) | 0.0010 (5) |
| O7 | 0.0208 (7) | 0.0215 (8) | 0.0096 (6) | 0.0050 (6) | 0.0010 (5) | −0.0021 (5) |
| O8 | 0.0163 (7) | 0.0211 (8) | 0.0103 (6) | 0.0056 (6) | 0.0014 (5) | 0.0005 (5) |
| C15 | 0.0177 (9) | 0.0214 (12) | 0.0113 (9) | 0.0057 (8) | 0.0005 (7) | 0.0012 (8) |
| C16 | 0.0171 (10) | 0.0218 (12) | 0.0198 (10) | 0.0037 (8) | 0.0047 (8) | 0.0023 (8) |
| C1—N1 | 1.324 (2) | C7—H7A | 0.9900 |
| C1—N2 | 1.331 (2) | C7—H7B | 0.9900 |
| C1—N3 | 1.351 (2) | C8—O2 | 1.420 (2) |
| N1—H11 | 0.84 (2) | C8—H8A | 0.9900 |
| N1—H12 | 0.89 (2) | C8—H8B | 0.9900 |
| N2—H21 | 0.85 (2) | O2—C9 | 1.428 (2) |
| N2—H22 | 0.92 (2) | C9—C10 | 1.504 (3) |
| N3—C5 | 1.470 (2) | C9—H9A | 0.9900 |
| N3—C2 | 1.474 (2) | C9—H9B | 0.9900 |
| C2—C3 | 1.510 (3) | C10—H10A | 0.9900 |
| C2—H2A | 0.9900 | C10—H10B | 0.9900 |
| C2—H2B | 0.9900 | C11—O4 | 1.243 (2) |
| C3—O1 | 1.429 (2) | C11—O3 | 1.251 (2) |
| C3—H3A | 0.9900 | C11—O5 | 1.375 (2) |
| C3—H3B | 0.9900 | O5—C12 | 1.439 (2) |
| O1—C4 | 1.424 (2) | C12—C13 | 1.501 (3) |
| C4—C5 | 1.508 (3) | C12—H12A | 0.9900 |
| C4—H4A | 0.9900 | C12—H12B | 0.9900 |
| C4—H4B | 0.9900 | C13—H13A | 0.9800 |
| C5—H5A | 0.9900 | C13—H13B | 0.9800 |
| C5—H5B | 0.9900 | C13—H13C | 0.9800 |
| C6—N5 | 1.327 (2) | C14—O7 | 1.248 (2) |
| C6—N4 | 1.330 (2) | C14—O6 | 1.2507 (19) |
| C6—N6 | 1.352 (2) | C14—O8 | 1.368 (2) |
| N4—H41 | 0.86 (2) | O8—C15 | 1.4390 (19) |
| N4—H42 | 0.93 (2) | C15—C16 | 1.506 (3) |
| N5—H51 | 0.90 (2) | C15—H15A | 0.9900 |
| N5—H52 | 0.90 (2) | C15—H15B | 0.9900 |
| N6—C7 | 1.471 (2) | C16—H16A | 0.9800 |
| N6—C10 | 1.474 (2) | C16—H16B | 0.9800 |
| C7—C8 | 1.512 (3) | C16—H16C | 0.9800 |
| N1—C1—N2 | 117.44 (18) | C8—C7—H7B | 109.5 |
| N1—C1—N3 | 121.41 (16) | H7A—C7—H7B | 108.0 |
| N2—C1—N3 | 121.10 (16) | O2—C8—C7 | 112.11 (14) |
| C1—N1—H11 | 121.6 (14) | O2—C8—H8A | 109.2 |
| C1—N1—H12 | 115.2 (13) | C7—C8—H8A | 109.2 |
| H11—N1—H12 | 123.1 (19) | O2—C8—H8B | 109.2 |
| C1—N2—H21 | 122.7 (13) | C7—C8—H8B | 109.2 |
| C1—N2—H22 | 116.0 (13) | H8A—C8—H8B | 107.9 |
| H21—N2—H22 | 121.3 (17) | C8—O2—C9 | 108.51 (14) |
| C1—N3—C5 | 119.25 (14) | O2—C9—C10 | 111.74 (14) |
| C1—N3—C2 | 119.50 (14) | O2—C9—H9A | 109.3 |
| C5—N3—C2 | 113.33 (13) | C10—C9—H9A | 109.3 |
| N3—C2—C3 | 110.65 (14) | O2—C9—H9B | 109.3 |
| N3—C2—H2A | 109.5 | C10—C9—H9B | 109.3 |
| C3—C2—H2A | 109.5 | H9A—C9—H9B | 107.9 |
| N3—C2—H2B | 109.5 | N6—C10—C9 | 111.24 (14) |
| C3—C2—H2B | 109.5 | N6—C10—H10A | 109.4 |
| H2A—C2—H2B | 108.1 | C9—C10—H10A | 109.4 |
| O1—C3—C2 | 112.19 (15) | N6—C10—H10B | 109.4 |
| O1—C3—H3A | 109.2 | C9—C10—H10B | 109.4 |
| C2—C3—H3A | 109.2 | H10A—C10—H10B | 108.0 |
| O1—C3—H3B | 109.2 | O4—C11—O3 | 127.48 (17) |
| C2—C3—H3B | 109.2 | O4—C11—O5 | 119.35 (15) |
| H3A—C3—H3B | 107.9 | O3—C11—O5 | 113.17 (14) |
| C4—O1—C3 | 109.00 (13) | C11—O5—C12 | 117.10 (13) |
| O1—C4—C5 | 112.00 (15) | O5—C12—C13 | 106.96 (14) |
| O1—C4—H4A | 109.2 | O5—C12—H12A | 110.3 |
| C5—C4—H4A | 109.2 | C13—C12—H12A | 110.3 |
| O1—C4—H4B | 109.2 | O5—C12—H12B | 110.3 |
| C5—C4—H4B | 109.2 | C13—C12—H12B | 110.3 |
| H4A—C4—H4B | 107.9 | H12A—C12—H12B | 108.6 |
| N3—C5—C4 | 111.13 (14) | C12—C13—H13A | 109.5 |
| N3—C5—H5A | 109.4 | C12—C13—H13B | 109.5 |
| C4—C5—H5A | 109.4 | H13A—C13—H13B | 109.5 |
| N3—C5—H5B | 109.4 | C12—C13—H13C | 109.5 |
| C4—C5—H5B | 109.4 | H13A—C13—H13C | 109.5 |
| H5A—C5—H5B | 108.0 | H13B—C13—H13C | 109.5 |
| N5—C6—N4 | 118.27 (17) | O7—C14—O6 | 126.70 (17) |
| N5—C6—N6 | 120.64 (15) | O7—C14—O8 | 119.38 (14) |
| N4—C6—N6 | 121.08 (16) | O6—C14—O8 | 113.91 (14) |
| C6—N4—H41 | 116.3 (13) | C14—O8—C15 | 116.75 (12) |
| C6—N4—H42 | 121.0 (14) | O8—C15—C16 | 107.70 (14) |
| H41—N4—H42 | 122.5 (19) | O8—C15—H15A | 110.2 |
| C6—N5—H51 | 121.8 (13) | C16—C15—H15A | 110.2 |
| C6—N5—H52 | 120.7 (14) | O8—C15—H15B | 110.2 |
| H51—N5—H52 | 114.0 (18) | C16—C15—H15B | 110.2 |
| C6—N6—C7 | 118.09 (13) | H15A—C15—H15B | 108.5 |
| C6—N6—C10 | 118.98 (14) | C15—C16—H16A | 109.5 |
| C7—N6—C10 | 114.80 (15) | C15—C16—H16B | 109.5 |
| N6—C7—C8 | 110.93 (14) | H16A—C16—H16B | 109.5 |
| N6—C7—H7A | 109.5 | C15—C16—H16C | 109.5 |
| C8—C7—H7A | 109.5 | H16A—C16—H16C | 109.5 |
| N6—C7—H7B | 109.5 | H16B—C16—H16C | 109.5 |
| N1—C1—N3—C5 | −19.3 (3) | N4—C6—N6—C10 | 23.7 (2) |
| N2—C1—N3—C5 | 163.26 (16) | C6—N6—C7—C8 | 167.46 (16) |
| N1—C1—N3—C2 | −166.30 (17) | C10—N6—C7—C8 | −44.1 (2) |
| N2—C1—N3—C2 | 16.3 (3) | N6—C7—C8—O2 | 53.4 (2) |
| C1—N3—C2—C3 | −163.24 (16) | C7—C8—O2—C9 | −62.83 (19) |
| C5—N3—C2—C3 | 47.9 (2) | C8—O2—C9—C10 | 62.98 (19) |
| N3—C2—C3—O1 | −54.7 (2) | C6—N6—C10—C9 | −167.27 (15) |
| C2—C3—O1—C4 | 61.1 (2) | C7—N6—C10—C9 | 44.6 (2) |
| C3—O1—C4—C5 | −60.9 (2) | O2—C9—C10—N6 | −53.8 (2) |
| C1—N3—C5—C4 | 163.03 (16) | O4—C11—O5—C12 | −1.3 (2) |
| C2—N3—C5—C4 | −48.1 (2) | O3—C11—O5—C12 | 179.62 (15) |
| O1—C4—C5—N3 | 54.7 (2) | C11—O5—C12—C13 | −176.69 (15) |
| N5—C6—N6—C7 | −10.5 (2) | O7—C14—O8—C15 | −1.3 (2) |
| N4—C6—N6—C7 | 170.74 (16) | O6—C14—O8—C15 | 179.56 (15) |
| N5—C6—N6—C10 | −157.57 (16) | C14—O8—C15—C16 | 179.01 (15) |
| H··· | ||||
| N1—H11···O4i | 0.84 (2) | 2.12 (2) | 2.944 (1) | 168 (1) |
| N1—H12···O3ii | 0.89 (2) | 1.91 (2) | 2.795 (1) | 174 (1) |
| N2—H21···O6 | 0.85 (2) | 1.97 (2) | 2.807 (1) | 168 (1) |
| N2—H22···O4ii | 0.92 (2) | 1.95 (2) | 2.851 (1) | 164 (1) |
| N4—H41···O6ii | 0.86 (2) | 1.97 (2) | 2.817 (1) | 167 (1) |
| N4—H42···O7i | 0.93 (2) | 2.00 (2) | 2.889 (1) | 159 (1) |
| N5—H51···O7ii | 0.90 (2) | 1.99 (2) | 2.879 (1) | 172 (1) |
| N5—H52···O3iii | 0.90 (2) | 1.94 (2) | 2.776 (1) | 154 (1) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H11⋯O4i | 0.84 (2) | 2.12 (2) | 2.944 (1) | 168 (1) |
| N1—H12⋯O3ii | 0.89 (2) | 1.91 (2) | 2.795 (1) | 174 (1) |
| N2—H21⋯O6 | 0.85 (2) | 1.97 (2) | 2.807 (1) | 168 (1) |
| N2—H22⋯O4ii | 0.92 (2) | 1.95 (2) | 2.851 (1) | 164 (1) |
| N4—H41⋯O6ii | 0.86 (2) | 1.97 (2) | 2.817 (1) | 167 (1) |
| N4—H42⋯O7i | 0.93 (2) | 2.00 (2) | 2.889 (1) | 159 (1) |
| N5—H51⋯O7ii | 0.90 (2) | 1.99 (2) | 2.879 (1) | 172 (1) |
| N5—H52⋯O3iii | 0.90 (2) | 1.94 (2) | 2.776 (1) | 154 (1) |
Symmetry codes: (i) ; (ii) ; (iii) .