Literature DB >> 23468804

N-(1,3-Thia-zol-2-yl)-N'-[(thio-phen-2-yl)carbon-yl]thio-urea hemihydrate.

Durga Prasad Singh1, Seema Pratap, Sema Öztürk Yildirim, Ray J Butcher.   

Abstract

The title compound, C9H7N3OS3·0.5H2O, crystallizes with two independent but similar mol-ecules in the asymmetric unit, both of which are linked by a water mol-ecule through O-H⋯N hydrogen bonds. In addition the water O atom is further linked by N-H⋯O hydrogen bonds to two additional main mol-ecules, forming a tetra-meric unit. These tetra-meric units then form infinite ribbons parallel to the ac plane.The dihedral angle between the thio-phenoyl and thia-zolyl rings is 12.15 (10) and 21.69 (11)° in mol-ecules A and B, respectively. The central thio-urea core makes dihedral angles of 5.77 (11) and 8.61 (9)°, respectively, with the thio--phen-oyl and thia-zolyl rings in mol-ecule A and 8.41 (10) and 13.43 (12)° in mol-ecule B. Each mol-ecule adopts a trans-cis geometry with respect to the position of thio-phenoyl and thia-zole groups relative to the S atom across the thio-urea C-N bonds. This geometry is stabilized by intra-molecular N-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 23468804      PMCID: PMC3588839          DOI: 10.1107/S160053681204500X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to aroyl­thio­urea and its derivatives, see: Aly et al. (2007 ▶). For related structures, see: Koch (2001 ▶); Pérez et al. (2008 ▶). For their biological activity, see: Saeed et al. (2008 ▶); Gu et al. (2007 ▶); Xu et al. (2004 ▶); Yan & Xue (2008 ▶).

Experimental

Crystal data

C9H7N3OS3·0.5H2O M = 278.37 Triclinic, a = 7.4489 (4) Å b = 11.1060 (6) Å c = 14.7935 (7) Å α = 93.559 (4)° β = 99.813 (4)° γ = 107.789 (5)° V = 1139.74 (11) Å3 Z = 4 Cu Kα radiation μ = 5.86 mm−1 T = 123 K 0.35 × 0.25 × 0.18 mm

Data collection

Oxford Diffraction Xcalibur (Ruby, Gemini CCD) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.441, T max = 1.000 7828 measured reflections 4566 independent reflections 3906 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.110 S = 1.08 4566 reflections 304 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681204500X/zs2240sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681204500X/zs2240Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681204500X/zs2240Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H7N3OS3·0.5H2OZ = 4
Mr = 278.37F(000) = 572
Triclinic, P1Dx = 1.622 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54184 Å
a = 7.4489 (4) ÅCell parameters from 3735 reflections
b = 11.1060 (6) Åθ = 3.1–75.6°
c = 14.7935 (7) ŵ = 5.86 mm1
α = 93.559 (4)°T = 123 K
β = 99.813 (4)°Block, colorless
γ = 107.789 (5)°0.35 × 0.25 × 0.18 mm
V = 1139.74 (11) Å3
Oxford Diffraction Xcalibur (Ruby, Gemini CCD) diffractometer4566 independent reflections
Radiation source: Enhance (Cu) X-ray Source3906 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
Detector resolution: 10.5081 pixels mm-1θmax = 75.8°, θmin = 3.1°
ω scansh = −9→6
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −13→13
Tmin = 0.441, Tmax = 1.000l = −12→18
7828 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0566P)2 + 0.1264P] where P = (Fo2 + 2Fc2)/3
4566 reflections(Δ/σ)max = 0.001
304 parametersΔρmax = 0.43 e Å3
3 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1A0.17373 (9)0.25490 (5)0.47025 (4)0.02167 (15)
S1B0.26874 (10)−0.44204 (6)0.98233 (4)0.02371 (15)
S2A0.29573 (10)−0.30344 (6)0.38262 (4)0.02567 (16)
S2B0.22859 (9)0.13688 (5)1.07688 (4)0.01906 (14)
S3A0.32482 (9)−0.42492 (5)0.56122 (4)0.02351 (15)
S3B0.14624 (9)0.23871 (5)0.89130 (4)0.02046 (15)
O1A0.2481 (3)0.03651 (16)0.55080 (11)0.0221 (4)
O1B0.2523 (3)−0.20849 (16)0.90756 (12)0.0243 (4)
O1W0.5774 (2)0.02421 (15)0.75431 (12)0.0196 (4)
N1A0.2661 (3)−0.07508 (18)0.41864 (13)0.0171 (4)
H1AA0.2675−0.07090.36090.021*
N1B0.2789 (3)−0.08541 (17)1.04263 (13)0.0149 (4)
H1BA0.3020−0.08301.10180.018*
N2A0.3233 (3)−0.17714 (18)0.54658 (13)0.0172 (4)
H2AA0.3276−0.10650.57570.021*
N2B0.2633 (3)0.02718 (18)0.91718 (13)0.0158 (4)
H2BA0.2896−0.03470.89070.019*
N3A0.3823 (3)−0.24320 (18)0.69077 (14)0.0198 (4)
N3B0.2608 (3)0.10852 (18)0.77715 (13)0.0187 (4)
C1A0.1092 (4)0.3120 (2)0.36934 (18)0.0230 (5)
H1A0.08580.38940.36650.028*
C1B0.2768 (4)−0.5164 (2)1.07967 (18)0.0253 (5)
H1B0.2776−0.59991.08040.030*
C2A0.0959 (4)0.2312 (2)0.29353 (18)0.0235 (5)
H2A0.06150.24700.23310.028*
C2B0.2821 (4)−0.4394 (2)1.15643 (17)0.0228 (5)
H2B0.2863−0.46471.21530.027*
C3A0.1405 (3)0.1203 (2)0.31700 (17)0.0196 (5)
H3A0.13880.05530.27380.024*
C3B0.2803 (3)−0.3171 (2)1.13637 (16)0.0188 (5)
H3B0.2834−0.25281.18050.023*
C4A0.1863 (3)0.1199 (2)0.41070 (16)0.0163 (5)
C4B0.2735 (3)−0.3040 (2)1.04436 (16)0.0164 (5)
C5A0.2352 (3)0.0259 (2)0.46643 (16)0.0161 (5)
C5B0.2672 (3)−0.1975 (2)0.99201 (16)0.0161 (5)
C6A0.2953 (3)−0.1828 (2)0.45404 (16)0.0170 (5)
C6B0.2569 (3)0.0239 (2)1.00755 (16)0.0152 (4)
C7A0.3461 (3)−0.2706 (2)0.60104 (17)0.0167 (5)
C7B0.2328 (3)0.1179 (2)0.86155 (16)0.0149 (4)
C8A0.3920 (4)−0.3491 (2)0.73281 (18)0.0226 (5)
H8A0.4158−0.34810.79670.027*
C8B0.2079 (4)0.2002 (2)0.73046 (17)0.0210 (5)
H8B0.21730.20820.66910.025*
C9A0.3645 (4)−0.4542 (2)0.67459 (18)0.0254 (6)
H9A0.3667−0.53230.69320.030*
C9B0.1420 (4)0.2768 (2)0.77978 (17)0.0219 (5)
H9B0.09980.34170.75700.026*
H1W0.486 (3)0.052 (3)0.750 (3)0.050*
H2W0.531 (4)−0.0536 (3)0.744 (2)0.050*
U11U22U33U12U13U23
S1A0.0280 (3)0.0159 (3)0.0215 (3)0.0091 (2)0.0033 (2)−0.0003 (2)
S1B0.0384 (4)0.0153 (3)0.0203 (3)0.0137 (3)0.0053 (2)−0.0009 (2)
S2A0.0424 (4)0.0177 (3)0.0177 (3)0.0141 (3)0.0017 (3)−0.0029 (2)
S2B0.0280 (3)0.0126 (3)0.0167 (3)0.0081 (2)0.0033 (2)−0.0014 (2)
S3A0.0336 (3)0.0113 (3)0.0234 (3)0.0059 (2)0.0030 (2)−0.0002 (2)
S3B0.0286 (3)0.0172 (3)0.0218 (3)0.0133 (2)0.0095 (2)0.0050 (2)
O1A0.0312 (10)0.0176 (8)0.0176 (9)0.0089 (7)0.0043 (7)−0.0004 (6)
O1B0.0396 (11)0.0183 (8)0.0183 (9)0.0139 (8)0.0064 (8)0.0011 (7)
O1W0.0232 (9)0.0117 (8)0.0228 (9)0.0067 (7)0.0012 (7)−0.0014 (7)
N1A0.0231 (10)0.0127 (9)0.0151 (9)0.0065 (8)0.0015 (8)0.0000 (7)
N1B0.0183 (9)0.0120 (9)0.0145 (9)0.0060 (7)0.0019 (7)0.0006 (7)
N2A0.0217 (10)0.0104 (9)0.0175 (10)0.0043 (7)0.0018 (8)−0.0020 (7)
N2B0.0189 (9)0.0123 (9)0.0181 (10)0.0079 (7)0.0046 (8)−0.0001 (7)
N3A0.0210 (10)0.0154 (10)0.0204 (10)0.0035 (8)0.0015 (8)0.0019 (8)
N3B0.0229 (10)0.0139 (9)0.0192 (10)0.0061 (8)0.0042 (8)0.0007 (8)
C1A0.0238 (12)0.0190 (12)0.0285 (13)0.0101 (10)0.0045 (10)0.0058 (10)
C1B0.0376 (15)0.0148 (11)0.0254 (13)0.0125 (10)0.0030 (11)0.0042 (10)
C2A0.0228 (12)0.0283 (13)0.0220 (12)0.0117 (10)0.0037 (10)0.0058 (10)
C2B0.0313 (13)0.0177 (12)0.0184 (12)0.0090 (10)0.0006 (10)0.0026 (9)
C3A0.0189 (11)0.0183 (11)0.0220 (12)0.0066 (9)0.0043 (9)0.0014 (9)
C3B0.0210 (12)0.0130 (11)0.0202 (12)0.0059 (9)−0.0009 (9)−0.0031 (9)
C4A0.0141 (10)0.0137 (10)0.0195 (11)0.0031 (8)0.0023 (9)−0.0008 (9)
C4B0.0153 (10)0.0117 (10)0.0218 (12)0.0055 (8)0.0020 (9)−0.0031 (9)
C5A0.0139 (10)0.0120 (10)0.0199 (12)0.0018 (8)0.0022 (9)−0.0015 (9)
C5B0.0139 (10)0.0124 (10)0.0212 (12)0.0045 (8)0.0024 (9)−0.0010 (9)
C6A0.0164 (11)0.0137 (10)0.0182 (11)0.0030 (8)0.0002 (9)0.0009 (8)
C6B0.0132 (10)0.0100 (10)0.0201 (11)0.0022 (8)0.0009 (8)0.0003 (8)
C7A0.0150 (11)0.0107 (10)0.0219 (12)0.0016 (8)0.0026 (9)−0.0003 (8)
C7B0.0137 (10)0.0109 (10)0.0194 (11)0.0042 (8)0.0015 (8)−0.0006 (8)
C8A0.0228 (12)0.0218 (12)0.0217 (12)0.0054 (10)0.0026 (10)0.0062 (10)
C8B0.0245 (12)0.0181 (11)0.0196 (12)0.0059 (10)0.0029 (9)0.0042 (9)
C9A0.0304 (14)0.0169 (12)0.0269 (14)0.0048 (10)0.0036 (11)0.0082 (10)
C9B0.0268 (13)0.0195 (12)0.0219 (12)0.0102 (10)0.0042 (10)0.0088 (10)
S1A—C1A1.709 (3)N2B—H2BA0.8600
S1A—C4A1.727 (2)N3A—C7A1.306 (3)
S1B—C1B1.705 (3)N3A—C8A1.379 (3)
S1B—C4B1.725 (2)N3B—C7B1.303 (3)
S2A—C6A1.655 (2)N3B—C8B1.382 (3)
S2B—C6B1.657 (2)C1A—C2A1.362 (4)
S3A—C9A1.721 (3)C1A—H1A0.9300
S3A—C7A1.728 (2)C1B—C2B1.366 (4)
S3B—C7B1.721 (2)C1B—H1B0.9300
S3B—C9B1.726 (2)C2A—C3A1.418 (3)
O1A—C5A1.231 (3)C2A—H2A0.9300
O1B—C5B1.230 (3)C2B—C3B1.411 (3)
O1W—H1W0.8199 (10)C2B—H2B0.9300
O1W—H2W0.8199 (11)C3A—C4A1.370 (3)
N1A—C5A1.387 (3)C3A—H3A0.9300
N1A—C6A1.396 (3)C3B—C4B1.372 (3)
N1A—H1AA0.8600C3B—H3B0.9300
N1B—C5B1.383 (3)C4A—C5A1.463 (3)
N1B—C6B1.393 (3)C4B—C5B1.461 (3)
N1B—H1BA0.8600C8A—C9A1.347 (4)
N2A—C6A1.344 (3)C8A—H8A0.9300
N2A—C7A1.385 (3)C8B—C9B1.340 (4)
N2A—H2AA0.8600C8B—H8B0.9300
N2B—C6B1.348 (3)C9A—H9A0.9300
N2B—C7B1.387 (3)C9B—H9B0.9300
C1A—S1A—C4A91.39 (12)C3A—C4A—C5A131.8 (2)
C1B—S1B—C4B91.37 (12)C3A—C4A—S1A111.53 (18)
C9A—S3A—C7A88.14 (12)C5A—C4A—S1A116.61 (17)
C7B—S3B—C9B88.16 (11)C3B—C4B—C5B131.9 (2)
H1W—O1W—H2W106 (2)C3B—C4B—S1B111.50 (17)
C5A—N1A—C6A127.1 (2)C5B—C4B—S1B116.60 (18)
C5A—N1A—H1AA116.4O1A—C5A—N1A122.3 (2)
C6A—N1A—H1AA116.4O1A—C5A—C4A121.5 (2)
C5B—N1B—C6B126.7 (2)N1A—C5A—C4A116.1 (2)
C5B—N1B—H1BA116.7O1B—C5B—N1B122.6 (2)
C6B—N1B—H1BA116.7O1B—C5B—C4B121.1 (2)
C6A—N2A—C7A128.3 (2)N1B—C5B—C4B116.3 (2)
C6A—N2A—H2AA115.9N2A—C6A—N1A114.9 (2)
C7A—N2A—H2AA115.9N2A—C6A—S2A125.44 (18)
C6B—N2B—C7B128.1 (2)N1A—C6A—S2A119.68 (17)
C6B—N2B—H2BA116.0N2B—C6B—N1B114.6 (2)
C7B—N2B—H2BA116.0N2B—C6B—S2B125.81 (17)
C7A—N3A—C8A110.1 (2)N1B—C6B—S2B119.57 (17)
C7B—N3B—C8B109.9 (2)N3A—C7A—N2A118.5 (2)
C2A—C1A—S1A112.31 (19)N3A—C7A—S3A115.58 (18)
C2A—C1A—H1A123.8N2A—C7A—S3A125.85 (18)
S1A—C1A—H1A123.8N3B—C7B—N2B118.3 (2)
C2B—C1B—S1B112.34 (19)N3B—C7B—S3B115.79 (17)
C2B—C1B—H1B123.8N2B—C7B—S3B125.78 (18)
S1B—C1B—H1B123.8C9A—C8A—N3A115.1 (2)
C1A—C2A—C3A112.5 (2)C9A—C8A—H8A122.4
C1A—C2A—H2A123.7N3A—C8A—H8A122.4
C3A—C2A—H2A123.7C9B—C8B—N3B115.3 (2)
C1B—C2B—C3B112.4 (2)C9B—C8B—H8B122.3
C1B—C2B—H2B123.8N3B—C8B—H8B122.3
C3B—C2B—H2B123.8C8A—C9A—S3A111.08 (19)
C4A—C3A—C2A112.3 (2)C8A—C9A—H9A124.5
C4A—C3A—H3A123.9S3A—C9A—H9A124.5
C2A—C3A—H3A123.9C8B—C9B—S3B110.83 (18)
C4B—C3B—C2B112.4 (2)C8B—C9B—H9B124.6
C4B—C3B—H3B123.8S3B—C9B—H9B124.6
C2B—C3B—H3B123.8
C4A—S1A—C1A—C2A0.6 (2)C7A—N2A—C6A—N1A176.5 (2)
C4B—S1B—C1B—C2B0.3 (2)C7A—N2A—C6A—S2A−4.3 (4)
S1A—C1A—C2A—C3A−0.5 (3)C5A—N1A—C6A—N2A−10.2 (3)
S1B—C1B—C2B—C3B−0.3 (3)C5A—N1A—C6A—S2A170.44 (18)
C1A—C2A—C3A—C4A0.1 (3)C7B—N2B—C6B—N1B175.1 (2)
C1B—C2B—C3B—C4B0.1 (3)C7B—N2B—C6B—S2B−5.7 (4)
C2A—C3A—C4A—C5A177.8 (2)C5B—N1B—C6B—N2B−13.9 (3)
C2A—C3A—C4A—S1A0.3 (3)C5B—N1B—C6B—S2B166.76 (18)
C1A—S1A—C4A—C3A−0.49 (19)C8A—N3A—C7A—N2A177.4 (2)
C1A—S1A—C4A—C5A−178.44 (19)C8A—N3A—C7A—S3A−0.9 (3)
C2B—C3B—C4B—C5B179.2 (2)C6A—N2A—C7A—N3A176.3 (2)
C2B—C3B—C4B—S1B0.1 (3)C6A—N2A—C7A—S3A−5.5 (4)
C1B—S1B—C4B—C3B−0.2 (2)C9A—S3A—C7A—N3A0.9 (2)
C1B—S1B—C4B—C5B−179.44 (19)C9A—S3A—C7A—N2A−177.3 (2)
C6A—N1A—C5A—O1A7.0 (4)C8B—N3B—C7B—N2B174.97 (19)
C6A—N1A—C5A—C4A−173.1 (2)C8B—N3B—C7B—S3B−1.3 (3)
C3A—C4A—C5A—O1A−170.5 (2)C6B—N2B—C7B—N3B174.7 (2)
S1A—C4A—C5A—O1A6.9 (3)C6B—N2B—C7B—S3B−9.5 (3)
C3A—C4A—C5A—N1A9.6 (4)C9B—S3B—C7B—N3B1.54 (19)
S1A—C4A—C5A—N1A−173.01 (16)C9B—S3B—C7B—N2B−174.4 (2)
C6B—N1B—C5B—O1B6.8 (4)C7A—N3A—C8A—C9A0.5 (3)
C6B—N1B—C5B—C4B−173.2 (2)C7B—N3B—C8B—C9B0.2 (3)
C3B—C4B—C5B—O1B−176.5 (2)N3A—C8A—C9A—S3A0.2 (3)
S1B—C4B—C5B—O1B2.5 (3)C7A—S3A—C9A—C8A−0.6 (2)
C3B—C4B—C5B—N1B3.5 (4)N3B—C8B—C9B—S3B0.9 (3)
S1B—C4B—C5B—N1B−177.49 (16)C7B—S3B—C9B—C8B−1.32 (19)
D—H···AD—HH···AD···AD—H···A
N1A—H1AA···O1Wi0.862.223.003 (3)152
N1B—H1BA···O1Wii0.862.142.973 (3)163
N2A—H2AA···O1A0.861.892.599 (3)138
N2B—H2BA···O1B0.861.902.588 (3)136
O1W—H1W···N3B0.82 (1)2.06 (1)2.852 (3)163 (4)
O1W—H2W···N3A0.82 (1)2.09 (1)2.892 (3)167 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1A—H1AA⋯O1W i 0.862.223.003 (3)152
N1B—H1BA⋯O1W ii 0.862.142.973 (3)163
N2A—H2AA⋯O1A 0.861.892.599 (3)138
N2B—H2BA⋯O1B 0.861.902.588 (3)136
O1W—H1W⋯N3B 0.82 (1)2.06 (1)2.852 (3)163 (4)
O1W—H2W⋯N3A 0.82 (1)2.09 (1)2.892 (3)167 (3)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ethyl 4-(3-benzoyl-thio-ureido)benzoate.

Authors:  Sohail Saeed; Moazzam Hussain Bhatti; Uzma Yunus; Peter G Jones
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-12
  2 in total
  2 in total

1.  Crystal structures of N-[(4-phenyl-thia-zol-2-yl)carbamo-thio-yl]benzamide and N-{[4-(4-bromo-phen-yl)thia-zol-2-yl]carbamo-thio-yl}benzamide from synchrotron X-ray diffraction.

Authors:  Ekaterina S Gantimurova; Alexander S Bunev; Kristina Yu Talina; Gennady I Ostapenko; Pavel V Dorovatovskii; Nikolai N Lobanov; Victor N Khrustalev
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-08-26

2.  1-(2-Furo-yl)-3-(2-meth-oxy-4-nitro-phen-yl)thio-urea.

Authors:  Seema Pratap; Durga P Singh; Sushil K Gupta; Sema Öztürk Yildirim; Ray J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-02
  2 in total

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