| Literature DB >> 23468804 |
Durga Prasad Singh1, Seema Pratap, Sema Öztürk Yildirim, Ray J Butcher.
Abstract
The title compound, C9H7N3OS3·0.5H2O, crystallizes with two independent but similar mol-ecules in the asymmetric unit, both of which are linked by a water mol-ecule through O-H⋯N hydrogen bonds. In addition the water O atom is further linked by N-H⋯O hydrogen bonds to two additional main mol-ecules, forming a tetra-meric unit. These tetra-meric units then form infinite ribbons parallel to the ac plane.The dihedral angle between the thio-phenoyl and thia-zolyl rings is 12.15 (10) and 21.69 (11)° in mol-ecules A and B, respectively. The central thio-urea core makes dihedral angles of 5.77 (11) and 8.61 (9)°, respectively, with the thio--phen-oyl and thia-zolyl rings in mol-ecule A and 8.41 (10) and 13.43 (12)° in mol-ecule B. Each mol-ecule adopts a trans-cis geometry with respect to the position of thio-phenoyl and thia-zole groups relative to the S atom across the thio-urea C-N bonds. This geometry is stabilized by intra-molecular N-H⋯O hydrogen bonds.Entities:
Year: 2012 PMID: 23468804 PMCID: PMC3588839 DOI: 10.1107/S160053681204500X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H7N3OS3·0.5H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Cu |
| Cell parameters from 3735 reflections | |
| θ = 3.1–75.6° | |
| µ = 5.86 mm−1 | |
| α = 93.559 (4)° | |
| β = 99.813 (4)° | Block, colorless |
| γ = 107.789 (5)° | 0.35 × 0.25 × 0.18 mm |
| Oxford Diffraction Xcalibur (Ruby, Gemini CCD) diffractometer | 4566 independent reflections |
| Radiation source: Enhance (Cu) X-ray Source | 3906 reflections with |
| Graphite monochromator | |
| Detector resolution: 10.5081 pixels mm-1 | θmax = 75.8°, θmin = 3.1° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 7828 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4566 reflections | (Δ/σ)max = 0.001 |
| 304 parameters | Δρmax = 0.43 e Å−3 |
| 3 restraints | Δρmin = −0.30 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1A | 0.17373 (9) | 0.25490 (5) | 0.47025 (4) | 0.02167 (15) | |
| S1B | 0.26874 (10) | −0.44204 (6) | 0.98233 (4) | 0.02371 (15) | |
| S2A | 0.29573 (10) | −0.30344 (6) | 0.38262 (4) | 0.02567 (16) | |
| S2B | 0.22859 (9) | 0.13688 (5) | 1.07688 (4) | 0.01906 (14) | |
| S3A | 0.32482 (9) | −0.42492 (5) | 0.56122 (4) | 0.02351 (15) | |
| S3B | 0.14624 (9) | 0.23871 (5) | 0.89130 (4) | 0.02046 (15) | |
| O1A | 0.2481 (3) | 0.03651 (16) | 0.55080 (11) | 0.0221 (4) | |
| O1B | 0.2523 (3) | −0.20849 (16) | 0.90756 (12) | 0.0243 (4) | |
| O1W | 0.5774 (2) | 0.02421 (15) | 0.75431 (12) | 0.0196 (4) | |
| N1A | 0.2661 (3) | −0.07508 (18) | 0.41864 (13) | 0.0171 (4) | |
| H1AA | 0.2675 | −0.0709 | 0.3609 | 0.021* | |
| N1B | 0.2789 (3) | −0.08541 (17) | 1.04263 (13) | 0.0149 (4) | |
| H1BA | 0.3020 | −0.0830 | 1.1018 | 0.018* | |
| N2A | 0.3233 (3) | −0.17714 (18) | 0.54658 (13) | 0.0172 (4) | |
| H2AA | 0.3276 | −0.1065 | 0.5757 | 0.021* | |
| N2B | 0.2633 (3) | 0.02718 (18) | 0.91718 (13) | 0.0158 (4) | |
| H2BA | 0.2896 | −0.0347 | 0.8907 | 0.019* | |
| N3A | 0.3823 (3) | −0.24320 (18) | 0.69077 (14) | 0.0198 (4) | |
| N3B | 0.2608 (3) | 0.10852 (18) | 0.77715 (13) | 0.0187 (4) | |
| C1A | 0.1092 (4) | 0.3120 (2) | 0.36934 (18) | 0.0230 (5) | |
| H1A | 0.0858 | 0.3894 | 0.3665 | 0.028* | |
| C1B | 0.2768 (4) | −0.5164 (2) | 1.07967 (18) | 0.0253 (5) | |
| H1B | 0.2776 | −0.5999 | 1.0804 | 0.030* | |
| C2A | 0.0959 (4) | 0.2312 (2) | 0.29353 (18) | 0.0235 (5) | |
| H2A | 0.0615 | 0.2470 | 0.2331 | 0.028* | |
| C2B | 0.2821 (4) | −0.4394 (2) | 1.15643 (17) | 0.0228 (5) | |
| H2B | 0.2863 | −0.4647 | 1.2153 | 0.027* | |
| C3A | 0.1405 (3) | 0.1203 (2) | 0.31700 (17) | 0.0196 (5) | |
| H3A | 0.1388 | 0.0553 | 0.2738 | 0.024* | |
| C3B | 0.2803 (3) | −0.3171 (2) | 1.13637 (16) | 0.0188 (5) | |
| H3B | 0.2834 | −0.2528 | 1.1805 | 0.023* | |
| C4A | 0.1863 (3) | 0.1199 (2) | 0.41070 (16) | 0.0163 (5) | |
| C4B | 0.2735 (3) | −0.3040 (2) | 1.04436 (16) | 0.0164 (5) | |
| C5A | 0.2352 (3) | 0.0259 (2) | 0.46643 (16) | 0.0161 (5) | |
| C5B | 0.2672 (3) | −0.1975 (2) | 0.99201 (16) | 0.0161 (5) | |
| C6A | 0.2953 (3) | −0.1828 (2) | 0.45404 (16) | 0.0170 (5) | |
| C6B | 0.2569 (3) | 0.0239 (2) | 1.00755 (16) | 0.0152 (4) | |
| C7A | 0.3461 (3) | −0.2706 (2) | 0.60104 (17) | 0.0167 (5) | |
| C7B | 0.2328 (3) | 0.1179 (2) | 0.86155 (16) | 0.0149 (4) | |
| C8A | 0.3920 (4) | −0.3491 (2) | 0.73281 (18) | 0.0226 (5) | |
| H8A | 0.4158 | −0.3481 | 0.7967 | 0.027* | |
| C8B | 0.2079 (4) | 0.2002 (2) | 0.73046 (17) | 0.0210 (5) | |
| H8B | 0.2173 | 0.2082 | 0.6691 | 0.025* | |
| C9A | 0.3645 (4) | −0.4542 (2) | 0.67459 (18) | 0.0254 (6) | |
| H9A | 0.3667 | −0.5323 | 0.6932 | 0.030* | |
| C9B | 0.1420 (4) | 0.2768 (2) | 0.77978 (17) | 0.0219 (5) | |
| H9B | 0.0998 | 0.3417 | 0.7570 | 0.026* | |
| H1W | 0.486 (3) | 0.052 (3) | 0.750 (3) | 0.050* | |
| H2W | 0.531 (4) | −0.0536 (3) | 0.744 (2) | 0.050* |
| S1A | 0.0280 (3) | 0.0159 (3) | 0.0215 (3) | 0.0091 (2) | 0.0033 (2) | −0.0003 (2) |
| S1B | 0.0384 (4) | 0.0153 (3) | 0.0203 (3) | 0.0137 (3) | 0.0053 (2) | −0.0009 (2) |
| S2A | 0.0424 (4) | 0.0177 (3) | 0.0177 (3) | 0.0141 (3) | 0.0017 (3) | −0.0029 (2) |
| S2B | 0.0280 (3) | 0.0126 (3) | 0.0167 (3) | 0.0081 (2) | 0.0033 (2) | −0.0014 (2) |
| S3A | 0.0336 (3) | 0.0113 (3) | 0.0234 (3) | 0.0059 (2) | 0.0030 (2) | −0.0002 (2) |
| S3B | 0.0286 (3) | 0.0172 (3) | 0.0218 (3) | 0.0133 (2) | 0.0095 (2) | 0.0050 (2) |
| O1A | 0.0312 (10) | 0.0176 (8) | 0.0176 (9) | 0.0089 (7) | 0.0043 (7) | −0.0004 (6) |
| O1B | 0.0396 (11) | 0.0183 (8) | 0.0183 (9) | 0.0139 (8) | 0.0064 (8) | 0.0011 (7) |
| O1W | 0.0232 (9) | 0.0117 (8) | 0.0228 (9) | 0.0067 (7) | 0.0012 (7) | −0.0014 (7) |
| N1A | 0.0231 (10) | 0.0127 (9) | 0.0151 (9) | 0.0065 (8) | 0.0015 (8) | 0.0000 (7) |
| N1B | 0.0183 (9) | 0.0120 (9) | 0.0145 (9) | 0.0060 (7) | 0.0019 (7) | 0.0006 (7) |
| N2A | 0.0217 (10) | 0.0104 (9) | 0.0175 (10) | 0.0043 (7) | 0.0018 (8) | −0.0020 (7) |
| N2B | 0.0189 (9) | 0.0123 (9) | 0.0181 (10) | 0.0079 (7) | 0.0046 (8) | −0.0001 (7) |
| N3A | 0.0210 (10) | 0.0154 (10) | 0.0204 (10) | 0.0035 (8) | 0.0015 (8) | 0.0019 (8) |
| N3B | 0.0229 (10) | 0.0139 (9) | 0.0192 (10) | 0.0061 (8) | 0.0042 (8) | 0.0007 (8) |
| C1A | 0.0238 (12) | 0.0190 (12) | 0.0285 (13) | 0.0101 (10) | 0.0045 (10) | 0.0058 (10) |
| C1B | 0.0376 (15) | 0.0148 (11) | 0.0254 (13) | 0.0125 (10) | 0.0030 (11) | 0.0042 (10) |
| C2A | 0.0228 (12) | 0.0283 (13) | 0.0220 (12) | 0.0117 (10) | 0.0037 (10) | 0.0058 (10) |
| C2B | 0.0313 (13) | 0.0177 (12) | 0.0184 (12) | 0.0090 (10) | 0.0006 (10) | 0.0026 (9) |
| C3A | 0.0189 (11) | 0.0183 (11) | 0.0220 (12) | 0.0066 (9) | 0.0043 (9) | 0.0014 (9) |
| C3B | 0.0210 (12) | 0.0130 (11) | 0.0202 (12) | 0.0059 (9) | −0.0009 (9) | −0.0031 (9) |
| C4A | 0.0141 (10) | 0.0137 (10) | 0.0195 (11) | 0.0031 (8) | 0.0023 (9) | −0.0008 (9) |
| C4B | 0.0153 (10) | 0.0117 (10) | 0.0218 (12) | 0.0055 (8) | 0.0020 (9) | −0.0031 (9) |
| C5A | 0.0139 (10) | 0.0120 (10) | 0.0199 (12) | 0.0018 (8) | 0.0022 (9) | −0.0015 (9) |
| C5B | 0.0139 (10) | 0.0124 (10) | 0.0212 (12) | 0.0045 (8) | 0.0024 (9) | −0.0010 (9) |
| C6A | 0.0164 (11) | 0.0137 (10) | 0.0182 (11) | 0.0030 (8) | 0.0002 (9) | 0.0009 (8) |
| C6B | 0.0132 (10) | 0.0100 (10) | 0.0201 (11) | 0.0022 (8) | 0.0009 (8) | 0.0003 (8) |
| C7A | 0.0150 (11) | 0.0107 (10) | 0.0219 (12) | 0.0016 (8) | 0.0026 (9) | −0.0003 (8) |
| C7B | 0.0137 (10) | 0.0109 (10) | 0.0194 (11) | 0.0042 (8) | 0.0015 (8) | −0.0006 (8) |
| C8A | 0.0228 (12) | 0.0218 (12) | 0.0217 (12) | 0.0054 (10) | 0.0026 (10) | 0.0062 (10) |
| C8B | 0.0245 (12) | 0.0181 (11) | 0.0196 (12) | 0.0059 (10) | 0.0029 (9) | 0.0042 (9) |
| C9A | 0.0304 (14) | 0.0169 (12) | 0.0269 (14) | 0.0048 (10) | 0.0036 (11) | 0.0082 (10) |
| C9B | 0.0268 (13) | 0.0195 (12) | 0.0219 (12) | 0.0102 (10) | 0.0042 (10) | 0.0088 (10) |
| S1A—C1A | 1.709 (3) | N2B—H2BA | 0.8600 |
| S1A—C4A | 1.727 (2) | N3A—C7A | 1.306 (3) |
| S1B—C1B | 1.705 (3) | N3A—C8A | 1.379 (3) |
| S1B—C4B | 1.725 (2) | N3B—C7B | 1.303 (3) |
| S2A—C6A | 1.655 (2) | N3B—C8B | 1.382 (3) |
| S2B—C6B | 1.657 (2) | C1A—C2A | 1.362 (4) |
| S3A—C9A | 1.721 (3) | C1A—H1A | 0.9300 |
| S3A—C7A | 1.728 (2) | C1B—C2B | 1.366 (4) |
| S3B—C7B | 1.721 (2) | C1B—H1B | 0.9300 |
| S3B—C9B | 1.726 (2) | C2A—C3A | 1.418 (3) |
| O1A—C5A | 1.231 (3) | C2A—H2A | 0.9300 |
| O1B—C5B | 1.230 (3) | C2B—C3B | 1.411 (3) |
| O1W—H1W | 0.8199 (10) | C2B—H2B | 0.9300 |
| O1W—H2W | 0.8199 (11) | C3A—C4A | 1.370 (3) |
| N1A—C5A | 1.387 (3) | C3A—H3A | 0.9300 |
| N1A—C6A | 1.396 (3) | C3B—C4B | 1.372 (3) |
| N1A—H1AA | 0.8600 | C3B—H3B | 0.9300 |
| N1B—C5B | 1.383 (3) | C4A—C5A | 1.463 (3) |
| N1B—C6B | 1.393 (3) | C4B—C5B | 1.461 (3) |
| N1B—H1BA | 0.8600 | C8A—C9A | 1.347 (4) |
| N2A—C6A | 1.344 (3) | C8A—H8A | 0.9300 |
| N2A—C7A | 1.385 (3) | C8B—C9B | 1.340 (4) |
| N2A—H2AA | 0.8600 | C8B—H8B | 0.9300 |
| N2B—C6B | 1.348 (3) | C9A—H9A | 0.9300 |
| N2B—C7B | 1.387 (3) | C9B—H9B | 0.9300 |
| C1A—S1A—C4A | 91.39 (12) | C3A—C4A—C5A | 131.8 (2) |
| C1B—S1B—C4B | 91.37 (12) | C3A—C4A—S1A | 111.53 (18) |
| C9A—S3A—C7A | 88.14 (12) | C5A—C4A—S1A | 116.61 (17) |
| C7B—S3B—C9B | 88.16 (11) | C3B—C4B—C5B | 131.9 (2) |
| H1W—O1W—H2W | 106 (2) | C3B—C4B—S1B | 111.50 (17) |
| C5A—N1A—C6A | 127.1 (2) | C5B—C4B—S1B | 116.60 (18) |
| C5A—N1A—H1AA | 116.4 | O1A—C5A—N1A | 122.3 (2) |
| C6A—N1A—H1AA | 116.4 | O1A—C5A—C4A | 121.5 (2) |
| C5B—N1B—C6B | 126.7 (2) | N1A—C5A—C4A | 116.1 (2) |
| C5B—N1B—H1BA | 116.7 | O1B—C5B—N1B | 122.6 (2) |
| C6B—N1B—H1BA | 116.7 | O1B—C5B—C4B | 121.1 (2) |
| C6A—N2A—C7A | 128.3 (2) | N1B—C5B—C4B | 116.3 (2) |
| C6A—N2A—H2AA | 115.9 | N2A—C6A—N1A | 114.9 (2) |
| C7A—N2A—H2AA | 115.9 | N2A—C6A—S2A | 125.44 (18) |
| C6B—N2B—C7B | 128.1 (2) | N1A—C6A—S2A | 119.68 (17) |
| C6B—N2B—H2BA | 116.0 | N2B—C6B—N1B | 114.6 (2) |
| C7B—N2B—H2BA | 116.0 | N2B—C6B—S2B | 125.81 (17) |
| C7A—N3A—C8A | 110.1 (2) | N1B—C6B—S2B | 119.57 (17) |
| C7B—N3B—C8B | 109.9 (2) | N3A—C7A—N2A | 118.5 (2) |
| C2A—C1A—S1A | 112.31 (19) | N3A—C7A—S3A | 115.58 (18) |
| C2A—C1A—H1A | 123.8 | N2A—C7A—S3A | 125.85 (18) |
| S1A—C1A—H1A | 123.8 | N3B—C7B—N2B | 118.3 (2) |
| C2B—C1B—S1B | 112.34 (19) | N3B—C7B—S3B | 115.79 (17) |
| C2B—C1B—H1B | 123.8 | N2B—C7B—S3B | 125.78 (18) |
| S1B—C1B—H1B | 123.8 | C9A—C8A—N3A | 115.1 (2) |
| C1A—C2A—C3A | 112.5 (2) | C9A—C8A—H8A | 122.4 |
| C1A—C2A—H2A | 123.7 | N3A—C8A—H8A | 122.4 |
| C3A—C2A—H2A | 123.7 | C9B—C8B—N3B | 115.3 (2) |
| C1B—C2B—C3B | 112.4 (2) | C9B—C8B—H8B | 122.3 |
| C1B—C2B—H2B | 123.8 | N3B—C8B—H8B | 122.3 |
| C3B—C2B—H2B | 123.8 | C8A—C9A—S3A | 111.08 (19) |
| C4A—C3A—C2A | 112.3 (2) | C8A—C9A—H9A | 124.5 |
| C4A—C3A—H3A | 123.9 | S3A—C9A—H9A | 124.5 |
| C2A—C3A—H3A | 123.9 | C8B—C9B—S3B | 110.83 (18) |
| C4B—C3B—C2B | 112.4 (2) | C8B—C9B—H9B | 124.6 |
| C4B—C3B—H3B | 123.8 | S3B—C9B—H9B | 124.6 |
| C2B—C3B—H3B | 123.8 | ||
| C4A—S1A—C1A—C2A | 0.6 (2) | C7A—N2A—C6A—N1A | 176.5 (2) |
| C4B—S1B—C1B—C2B | 0.3 (2) | C7A—N2A—C6A—S2A | −4.3 (4) |
| S1A—C1A—C2A—C3A | −0.5 (3) | C5A—N1A—C6A—N2A | −10.2 (3) |
| S1B—C1B—C2B—C3B | −0.3 (3) | C5A—N1A—C6A—S2A | 170.44 (18) |
| C1A—C2A—C3A—C4A | 0.1 (3) | C7B—N2B—C6B—N1B | 175.1 (2) |
| C1B—C2B—C3B—C4B | 0.1 (3) | C7B—N2B—C6B—S2B | −5.7 (4) |
| C2A—C3A—C4A—C5A | 177.8 (2) | C5B—N1B—C6B—N2B | −13.9 (3) |
| C2A—C3A—C4A—S1A | 0.3 (3) | C5B—N1B—C6B—S2B | 166.76 (18) |
| C1A—S1A—C4A—C3A | −0.49 (19) | C8A—N3A—C7A—N2A | 177.4 (2) |
| C1A—S1A—C4A—C5A | −178.44 (19) | C8A—N3A—C7A—S3A | −0.9 (3) |
| C2B—C3B—C4B—C5B | 179.2 (2) | C6A—N2A—C7A—N3A | 176.3 (2) |
| C2B—C3B—C4B—S1B | 0.1 (3) | C6A—N2A—C7A—S3A | −5.5 (4) |
| C1B—S1B—C4B—C3B | −0.2 (2) | C9A—S3A—C7A—N3A | 0.9 (2) |
| C1B—S1B—C4B—C5B | −179.44 (19) | C9A—S3A—C7A—N2A | −177.3 (2) |
| C6A—N1A—C5A—O1A | 7.0 (4) | C8B—N3B—C7B—N2B | 174.97 (19) |
| C6A—N1A—C5A—C4A | −173.1 (2) | C8B—N3B—C7B—S3B | −1.3 (3) |
| C3A—C4A—C5A—O1A | −170.5 (2) | C6B—N2B—C7B—N3B | 174.7 (2) |
| S1A—C4A—C5A—O1A | 6.9 (3) | C6B—N2B—C7B—S3B | −9.5 (3) |
| C3A—C4A—C5A—N1A | 9.6 (4) | C9B—S3B—C7B—N3B | 1.54 (19) |
| S1A—C4A—C5A—N1A | −173.01 (16) | C9B—S3B—C7B—N2B | −174.4 (2) |
| C6B—N1B—C5B—O1B | 6.8 (4) | C7A—N3A—C8A—C9A | 0.5 (3) |
| C6B—N1B—C5B—C4B | −173.2 (2) | C7B—N3B—C8B—C9B | 0.2 (3) |
| C3B—C4B—C5B—O1B | −176.5 (2) | N3A—C8A—C9A—S3A | 0.2 (3) |
| S1B—C4B—C5B—O1B | 2.5 (3) | C7A—S3A—C9A—C8A | −0.6 (2) |
| C3B—C4B—C5B—N1B | 3.5 (4) | N3B—C8B—C9B—S3B | 0.9 (3) |
| S1B—C4B—C5B—N1B | −177.49 (16) | C7B—S3B—C9B—C8B | −1.32 (19) |
| H··· | ||||
| N1 | 0.86 | 2.22 | 3.003 (3) | 152 |
| N1 | 0.86 | 2.14 | 2.973 (3) | 163 |
| N2 | 0.86 | 1.89 | 2.599 (3) | 138 |
| N2 | 0.86 | 1.90 | 2.588 (3) | 136 |
| O1 | 0.82 (1) | 2.06 (1) | 2.852 (3) | 163 (4) |
| O1 | 0.82 (1) | 2.09 (1) | 2.892 (3) | 167 (3) |
Hydrogen-bond geometry (Å, °)
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|
| H⋯ |
|
|
|---|---|---|---|---|
| N1 | 0.86 | 2.22 | 3.003 (3) | 152 |
| N1 | 0.86 | 2.14 | 2.973 (3) | 163 |
| N2 | 0.86 | 1.89 | 2.599 (3) | 138 |
| N2 | 0.86 | 1.90 | 2.588 (3) | 136 |
| O1 | 0.82 (1) | 2.06 (1) | 2.852 (3) | 163 (4) |
| O1 | 0.82 (1) | 2.09 (1) | 2.892 (3) | 167 (3) |
Symmetry codes: (i) ; (ii) .