Literature DB >> 27920931

Crystal structures of N-[(4-phenyl-thia-zol-2-yl)carbamo-thio-yl]benzamide and N-{[4-(4-bromo-phen-yl)thia-zol-2-yl]carbamo-thio-yl}benzamide from synchrotron X-ray diffraction.

Ekaterina S Gantimurova1, Alexander S Bunev1, Kristina Yu Talina1, Gennady I Ostapenko1, Pavel V Dorovatovskii2, Nikolai N Lobanov3, Victor N Khrustalev4.   

Abstract

The title compounds, C17H13N3OS2, (I), and C17H12BrN3OS2, (II), are potential active pharmaceutical ingredients. Compound (I) comprises two almost planar fragments. The first is the central (carbamo-thio-yl)amide (r.m.s. deviation = 0.038 Å), and the second consists of the thia-zole and two phenyl rings (r.m.s. deviation = 0.053 Å). The dihedral angle between these planes is 15.17 (5)°. Unlike (I), compound (II) comprises three almost planar fragments. The first is the central N-(thia-zol-2-ylcarbamo-thio-yl)amide (r.m.s. deviation = 0.084 Å), and the two others comprise the bromo-phenyl and phenyl substituents, respectively. The dihedral angles between the central and two terminal planar fragments are 21.58 (7) and 17.90 (9)°, respectively. Both (I) and (II) feature an intra-molecular N-H⋯O hydrogen bond, which closes an S(6) ring. In the crystal of (I), mol-ecules form hydrogen-bonded layers parallel to (100) mediated by N-H⋯S and C-H⋯O hydrogen bonds. In the crystal of (II), mol-ecules form a three-dimensional framework mediated by N-H⋯Br and C-H⋯O hydrogen bonds, as well as secondary S⋯Br [3.3507 (11) Å] and S⋯S [3.4343 (14) Å] inter-actions.

Entities:  

Keywords:  crystal structure; hydrogen bonds; synchrotron; thia­zoles; thio­urea

Year:  2016        PMID: 27920931      PMCID: PMC5120721          DOI: 10.1107/S2056989016013396

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Thio­ureas are the subject of significant inter­est owing to their biological properties as fungicides, herbicides (Walpole et al., 1998 ▸) and rodenticides (Sarkis & Faisal, 1985 ▸). It is also well-known that thio­urea derivatives and their metal complexes exhibit analgesic (El-Serwy et al., 2015 ▸), anti-inflammatory (Lin et al., 2013 ▸), anti­microbial (Stefanska et al., 2016 ▸) and anti­cancer (Rauf et al., 2015 ▸) activities. Moreover, thio­urea derivatives are valuable building blocks for the synthesis of amides, guanidines and a variety of heterocycles (e.g. Kidwai et al., 2001 ▸; Du & Curran, 2003 ▸). Recently, thio­urea derivatives were found to have use in organocatalysis (e.g. Connon, 2006 ▸; McCooey & Connon, 2005 ▸; Schreiner, 2003 ▸; Taylor & Jacobsen, 2006 ▸). For these reasons, a number of procedures have been reported for the synthesis of thio­ureas. In this paper we report a synthetic approach for the preparation of the new thio­urea derivatives (I) and (II) containing thia­zole fragments, and their structural characterization by synchrotron single-crystal X-ray diffraction.

Structural commentary

Compound (I), C17H13N3OS2, comprises two almost planar fragments. The first is the central (carbamo­thio­yl)amide grouping (r.m.s. deviation = 0.038 Å), and the second consists of the thia­zole and two phenyl rings (r.m.s. deviation = 0.053 Å) (Fig. 1 ▸). The dihedral angle between these planes is 15.17 (5)°.
Figure 1

The mol­ecular structure of (I). Displacement ellipsoids are shown at the 50% probability level. The dashed line indicates the intra­molecular hydrogen bond. H atoms are presented as small spheres of arbitrary radius.

Unlike (I), compound (II), C17H12N3OS2Br, comprises three almost planar fragments: the first is the central N-(thia­zol-2-ylcarbamo­thio­yl)amide (r.m.s. deviation = 0.084 Å), and the two others comprise the bromo­phenyl and phenyl substituents, respectively (Fig. 2 ▸). The dihedral angles between the central and two terminal fragments are 21.58 (7) and 17.90 (9)°, respectively.
Figure 2

The mol­ecular structure of (II). Displacement ellipsoids are shown at the 50% probability level. The dashed line indicates the intra­molecular hydrogen bond. H atoms are presented as small spheres of arbitrary radius.

The planarity of the fragments found in (I) and (II) is determined by the present of bond conjugation within each of them as well as the intra­molecular N1—H1⋯O1 hydrogen bond (Tables 1 ▸ and 2 ▸, Figs. 1 ▸ and 2 ▸). The different mol­ecular conformations observed for (I) and (II) may apparently be explained by the various systems of inter­molecular inter­actions present in the crystals (see the Supra­molecular features section below).
Table 1

Hydrogen-bond geometry (Å, °) for (I)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O10.921.852.6145 (18)139
N2—H2⋯S1i 0.932.693.5845 (15)162
C13—H13⋯O1ii 0.952.443.299 (2)150

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °) for (II)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O10.881.932.644 (3)138
N2—H2⋯Br1i 0.882.973.692 (3)141
C13—H13⋯O1ii 0.952.533.340 (4)144

Symmetry codes: (i) ; (ii) .

The bond-length and angle distribution within mol­ecules (I) and (II) are almost identical and in good agreement with those observed in related compounds (Singh et al., 2012 ▸, 2013 ▸). The values for the C—S—C angle in (I) [88.06 (8)°] and (II) [87.75 (14)°] are also very close to those in previously reported analogous structures [87.62 (7)–88.11 (8)°] (Yunus et al., 2008 ▸; Saeed et al., 2010 ▸).

Supra­molecular features

Although the similarity of the mol­ecular geometries and types of intra­molecular hydrogen bonds might lead to similar packing motifs, this is not found in the case of (I) and (II). The inter­molecular inter­actions, namely, N—H⋯X (X = S, Br) and C—H⋯O hydrogen bonding and the secondary S⋯S and S⋯Br inter­actions, combine in a different way, give rise to distinct packing motifs. In (I), the crystal packing consists of hydrogen-bonded layers parallel to (100), in which the mol­ecules are linked to each other by N2—H2⋯S1i and C13—H13⋯O1ii hydrogen bonds [Table 1 ▸, Fig. 3 ▸; symmetry codes: (i) −x + 1, −y + 1, −z + 1; (ii) −x + 1, y − , −z + ]. No secondary S⋯S inter­molecular inter­actions were observed in (I).
Figure 3

The crystal structure of (I) illustrating the hydrogen-bonded layers parallel to (100). Dashed lines indicate the intra­molecular N—H⋯O and inter­molecular N—H⋯S and C—H⋯O hydrogen bonds.

The situation in the case of (II) is quite different. The mol­ecules of (II) form a three-dimensional framework mediated by the N2—H2⋯Br1i and C13—H13⋯O1ii hydrogen bonds (Table 2 ▸, Fig. 4 ▸) as well as the secondary S1⋯Br1iii [3.3507 (11) Å] and S2⋯S2iv [3.4343 (14) Å] inter­actions [symmetry codes: (i) x, −y + 1, z − ; (ii) −x + 1, −y, −z + 1; (iii) x, −y + 1, −z + 1; (iv) −x + , y + , −z + ; Fig. 4 ▸]. It should be pointed out that the secondary inter­molecular S⋯Br and S⋯S inter­actions in (II) are significantly stronger than the inter­molecular hydrogen bonds and, consequently, structure-forming.
Figure 4

The crystal structure of (II). Dashed lines indicate the intra­molecular N—H⋯O and inter­molecular N—H⋯Br and C—H⋯O hydrogen bonds, as well as secondary inter­molecular S⋯S and S⋯Br inter­actions.

Synthesis and crystallization

Benzoyl chloride (0.60 ml, 0.73 g, 5.19 mmol) was added over 5 min to a freshly prepared solution of NH4SCN (0.39 g, 5.19 mmol) in acetone (40 ml), and the mixture was heated under reflux for 15 min. After heating, the appropriate 4-aryl­thia­zol-2-amine (4.33 mmol) in acetone (10 ml) was added. The mixture was heated again under reflux for 2 h (Fig. 5 ▸). Then excess cracked ice was added with vigorous stirring. The resulting solid was collected and liberally washed with water. These compounds were isolated as pale-yellow crystalline solids in 41% and 45% yield for the 4-phenyl (I) and 4-(4-bromo­phen­yl) (II) derivatives, respectively. Single crystals of the products were obtained by slow crystallization from N,N-di­methyl­formamide solution.
Figure 5

Synthesis of new thio­urea derivatives (I) and (II).

Spectroscopic and physical data for (I): m.p. 481–483 K. FTIR νmax cm−1: 3025, 1671, 1518, 1441, 1246, 1170, 668, 561. 1H NMR (600 MHz, DMSO-d 6, 304 K): δ = 7.35 (t, 1H, J = 7.3), 7.45 (t, 2H, J = 7.6), 7.56 (t, 2H, J = 7.6), 7.69 (t, 1H, J = 7.4), 7.74 (s, 1H), 7.94 (d, 2H, J = 7.8), 8.03 (d, 2H, J = 7.8), 12.18 (s, 1H), 14.27 (s, 1H). Analysis calculated for C17H13N3OS2: C, 60.16; H, 3.86; N, 12.38. Found: C, 60.22; H, 3.93; N, 12.47. Spectroscopic and physical data for (II) m.p. 484–486 K. FTIR νmax cm−1: 3395, 3055, 1674, 1515, 1488, 1244, 1165, 697. 1H NMR (600 MHz, DMSO-d 6,304 K): δ = 7.57 (t, 2H, J = 7.7), 7.64 (d, 2H, J = 8.0), 7.70 (t, 1H, J = 7.5), 7.83 (s, 1H), 7.90 (d, 2H, J = 8.1), 8.03 (d, 2H, J = 7.7), 1221 (s, 1H), 14.27 (s, 1H). Analysis calculated for C17H12N3OS2Br: C, 48.81; H, 2.89; N, 10.05. Found: C, 48.89; H, 2.95; N, 10.11.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. X-ray diffraction studies were carried out on the ‘Belok’ beamline (λ = 0.96990 Å) of the National Research Center ‘Kurchatov Institute’ (Moscow, Russian Federation) using a MAR CCD detector. For each compound, a total of 360 images were collected using an oscillation range of 1.0° (φ scan mode) and corrected for absorption using the SCALA program (Evans, 2006 ▸). The data were indexed, integrated and scaled using the utility iMOSFLM in the program CCP4 (Battye et al., 2011 ▸).
Table 3

Experimental details

 (I)(II)
Crystal data
Chemical formulaC17H13N3OS2 C17H12BrN3OS2
M r 339.42418.33
Crystal system, space groupMonoclinic, P21/c Monoclinic, C2/c
Temperature (K)100100
a, b, c (Å)12.901 (3), 5.5160 (11), 23.143 (5)37.210 (7), 4.0000 (8), 28.450 (6)
β (°)105.32 (3)128.69 (3)
V3)1588.4 (6)3305.2 (18)
Z 48
Radiation typeSynchrotron, λ = 0.96990 ÅSynchrotron, λ = 0.96990 Å
μ (mm−1)0.811.56
Crystal size (mm)0.15 × 0.10 × 0.050.07 × 0.05 × 0.03
 
Data collection
DiffractometerMAR CCDMAR CCD
Absorption correctionMulti-scan (SCALA; Evans, 2006)Multi-scan (SCALA; Evans, 2006)
T min, T max 0.870, 0.9500.880, 0.930
No. of measured, independent and observed [I > 2σ(I)] reflections26393, 3395, 289913698, 3267, 2523
R int 0.0330.065
(sin θ/λ)max−1)0.6420.641
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.036, 0.095, 1.030.040, 0.092, 1.02
No. of reflections33953267
No. of parameters209217
H-atom treatmentH-atom parameters constrainedH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.32, −0.320.62, −0.78

Computer programs: Automar (MarXperts, 2015 ▸), i MOSFLM (Battye et al., 2011 ▸), SHELXS97 and SHELXTL (Sheldrick, 2008 ▸) and SHELXL2014 (Sheldrick, 2015 ▸).

The hydrogen atoms of the amino groups were localized in the difference-Fourier map and included in the refinement with fixed positional (riding model) and isotropic displacement parameters [U iso(H) = 1.2U eq(N)]. The other hydrogen atoms were placed in calculated positions with C—H = 0.95 Å and refined using in a riding model with fixed isotropic displacement parameters [U iso(H) = 1.2U eq(C)]. Crystal structure: contains datablock(s) global, I, II. DOI: 10.1107/S2056989016013396/hb7611sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989016013396/hb7611Isup2.hkl Structure factors: contains datablock(s) II. DOI: 10.1107/S2056989016013396/hb7611IIsup3.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989016013396/hb7611Isup4.cml Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989016013396/hb7611IIsup5.cml CCDC references: 1500238, 1500237 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H13N3OS2F(000) = 704
Mr = 339.42Dx = 1.419 Mg m3
Monoclinic, P21/cSynchrotron radiation, λ = 0.96990 Å
a = 12.901 (3) ÅCell parameters from 600 reflections
b = 5.5160 (11) Åθ = 2.4–34.0°
c = 23.143 (5) ŵ = 0.81 mm1
β = 105.32 (3)°T = 100 K
V = 1588.4 (6) Å3Prism, colourless
Z = 40.15 × 0.10 × 0.05 mm
MAR CCD diffractometer2899 reflections with I > 2σ(I)
φ scanRint = 0.033
Absorption correction: multi-scan (SCALA; Evans, 2006)θmax = 38.5°, θmin = 2.2°
Tmin = 0.870, Tmax = 0.950h = −16→16
26393 measured reflectionsk = −6→7
3395 independent reflectionsl = −29→28
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.095w = 1/[σ2(Fo2) + (0.0566P)2 + 0.566P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
3395 reflectionsΔρmax = 0.32 e Å3
209 parametersΔρmin = −0.32 e Å3
0 restraintsExtinction correction: SHELXL2014 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: difference Fourier mapExtinction coefficient: 0.0035 (10)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
S10.41550 (3)0.80075 (7)0.45047 (2)0.03118 (14)
S20.25885 (3)1.09330 (7)0.35070 (2)0.02857 (14)
O10.47826 (9)0.3167 (2)0.30362 (5)0.0333 (3)
N10.36884 (10)0.6692 (2)0.33491 (6)0.0279 (3)
H10.38530.56860.30680.033*
N20.49953 (10)0.4417 (2)0.40077 (5)0.0265 (3)
H20.53460.40480.44030.032*
N30.22879 (10)0.8127 (2)0.25771 (6)0.0270 (3)
C10.42612 (12)0.6327 (3)0.39203 (7)0.0262 (3)
C20.28765 (12)0.8397 (3)0.31264 (7)0.0265 (3)
C30.15407 (12)0.9994 (3)0.24243 (7)0.0266 (3)
C40.16011 (13)1.1685 (3)0.28659 (7)0.0291 (3)
H40.11591.30860.28260.035*
C50.07557 (12)0.9915 (3)0.18273 (7)0.0263 (3)
C60.07731 (13)0.7958 (3)0.14375 (7)0.0292 (3)
H60.13000.67220.15550.035*
C70.00219 (13)0.7826 (3)0.08808 (8)0.0342 (4)
H70.00380.64960.06230.041*
C8−0.07530 (13)0.9630 (3)0.06996 (8)0.0356 (4)
H8−0.12640.95290.03200.043*
C9−0.07725 (14)1.1582 (3)0.10782 (8)0.0343 (4)
H9−0.12981.28170.09560.041*
C10−0.00247 (13)1.1736 (3)0.16369 (7)0.0303 (4)
H10−0.00431.30800.18910.036*
C110.52613 (12)0.3002 (3)0.35705 (7)0.0268 (3)
C120.61647 (12)0.1241 (3)0.37854 (6)0.0259 (3)
C130.62162 (12)−0.0727 (3)0.34049 (7)0.0280 (3)
H130.5687−0.09000.30340.034*
C140.70420 (13)−0.2414 (3)0.35736 (7)0.0298 (3)
H140.7074−0.37460.33190.036*
C150.78246 (13)−0.2151 (3)0.41177 (7)0.0318 (4)
H150.8389−0.33040.42320.038*
C160.77780 (13)−0.0197 (3)0.44932 (7)0.0316 (4)
H160.8308−0.00310.48640.038*
C170.69563 (12)0.1514 (3)0.43264 (7)0.0282 (3)
H170.69340.28590.45790.034*
U11U22U33U12U13U23
S10.0401 (2)0.0298 (2)0.0231 (2)0.00420 (17)0.00737 (16)−0.00296 (15)
S20.0325 (2)0.0253 (2)0.0282 (2)0.00129 (15)0.00863 (15)−0.00300 (15)
O10.0376 (6)0.0382 (7)0.0228 (6)0.0089 (5)0.0059 (5)−0.0010 (5)
N10.0319 (7)0.0282 (7)0.0236 (6)0.0033 (6)0.0075 (5)−0.0021 (5)
N20.0288 (6)0.0286 (7)0.0214 (6)0.0022 (5)0.0056 (5)0.0004 (5)
N30.0287 (6)0.0259 (7)0.0270 (7)0.0016 (5)0.0086 (5)0.0007 (5)
C10.0271 (7)0.0260 (8)0.0264 (7)−0.0013 (6)0.0087 (6)0.0004 (6)
C20.0300 (8)0.0232 (8)0.0282 (8)0.0003 (6)0.0110 (6)0.0005 (6)
C30.0276 (7)0.0231 (8)0.0314 (8)0.0003 (6)0.0120 (6)0.0024 (6)
C40.0301 (8)0.0259 (8)0.0318 (8)0.0019 (6)0.0089 (6)0.0003 (6)
C50.0265 (7)0.0239 (8)0.0300 (8)−0.0012 (6)0.0103 (6)0.0026 (6)
C60.0272 (7)0.0254 (8)0.0342 (8)0.0016 (6)0.0066 (6)−0.0001 (6)
C70.0342 (9)0.0286 (9)0.0375 (9)0.0005 (7)0.0058 (7)−0.0038 (7)
C80.0300 (8)0.0388 (10)0.0340 (8)0.0002 (7)0.0017 (7)0.0012 (7)
C90.0330 (8)0.0323 (9)0.0377 (9)0.0087 (7)0.0098 (7)0.0063 (7)
C100.0336 (8)0.0270 (8)0.0328 (8)0.0053 (7)0.0131 (7)0.0019 (6)
C110.0282 (8)0.0290 (8)0.0234 (7)−0.0012 (6)0.0074 (6)0.0001 (6)
C120.0274 (7)0.0271 (8)0.0243 (7)−0.0009 (6)0.0091 (6)0.0011 (6)
C130.0291 (8)0.0306 (8)0.0252 (7)−0.0022 (6)0.0085 (6)−0.0013 (6)
C140.0336 (8)0.0287 (8)0.0301 (8)0.0000 (7)0.0135 (6)−0.0015 (6)
C150.0320 (8)0.0309 (9)0.0343 (9)0.0065 (7)0.0120 (7)0.0050 (7)
C160.0290 (8)0.0387 (10)0.0259 (8)0.0022 (7)0.0053 (6)0.0020 (7)
C170.0317 (8)0.0287 (8)0.0250 (8)−0.0014 (7)0.0089 (6)−0.0011 (6)
S1—C11.6747 (16)C7—C81.394 (2)
S2—C41.7313 (17)C7—H70.9500
S2—C21.7447 (16)C8—C91.393 (3)
O1—C111.2308 (19)C8—H80.9500
N1—C11.348 (2)C9—C101.397 (2)
N1—C21.401 (2)C9—H90.9500
N1—H10.9210C10—H100.9500
N2—C111.3909 (19)C11—C121.498 (2)
N2—C11.395 (2)C12—C171.399 (2)
N2—H20.9300C12—C131.410 (2)
N3—C21.306 (2)C13—C141.391 (2)
N3—C31.391 (2)C13—H130.9500
C3—C41.371 (2)C14—C151.398 (2)
C3—C51.482 (2)C14—H140.9500
C4—H40.9500C15—C161.396 (2)
C5—C101.408 (2)C15—H150.9500
C5—C61.411 (2)C16—C171.395 (2)
C6—C71.395 (2)C16—H160.9500
C6—H60.9500C17—H170.9500
C4—S2—C288.06 (8)C9—C8—H8120.2
C1—N1—C2128.58 (13)C7—C8—H8120.2
C1—N1—H1115.7C8—C9—C10120.43 (15)
C2—N1—H1115.7C8—C9—H9119.8
C11—N2—C1127.36 (13)C10—C9—H9119.8
C11—N2—H2116.3C9—C10—C5120.55 (15)
C1—N2—H2116.3C9—C10—H10119.7
C2—N3—C3110.42 (13)C5—C10—H10119.7
N1—C1—N2115.46 (13)O1—C11—N2122.31 (14)
N1—C1—S1124.67 (12)O1—C11—C12121.44 (14)
N2—C1—S1119.87 (11)N2—C11—C12116.25 (13)
N3—C2—N1117.88 (14)C17—C12—C13119.85 (14)
N3—C2—S2115.87 (12)C17—C12—C11123.20 (14)
N1—C2—S2126.22 (12)C13—C12—C11116.92 (13)
C4—C3—N3114.53 (14)C14—C13—C12119.92 (14)
C4—C3—C5127.25 (14)C14—C13—H13120.0
N3—C3—C5118.17 (14)C12—C13—H13120.0
C3—C4—S2111.10 (12)C13—C14—C15120.06 (15)
C3—C4—H4124.5C13—C14—H14120.0
S2—C4—H4124.5C15—C14—H14120.0
C10—C5—C6118.47 (15)C16—C15—C14120.09 (15)
C10—C5—C3121.79 (14)C16—C15—H15120.0
C6—C5—C3119.73 (14)C14—C15—H15120.0
C7—C6—C5120.38 (15)C15—C16—C17120.29 (15)
C7—C6—H6119.8C15—C16—H16119.9
C5—C6—H6119.8C17—C16—H16119.9
C8—C7—C6120.58 (16)C16—C17—C12119.77 (15)
C8—C7—H7119.7C16—C17—H17120.1
C6—C7—H7119.7C12—C17—H17120.1
C9—C8—C7119.56 (16)
C2—N1—C1—N2177.74 (14)C5—C6—C7—C80.3 (3)
C2—N1—C1—S1−3.2 (2)C6—C7—C8—C90.2 (3)
C11—N2—C1—N15.9 (2)C7—C8—C9—C10−0.2 (3)
C11—N2—C1—S1−173.23 (12)C8—C9—C10—C5−0.4 (2)
C3—N3—C2—N1−178.70 (13)C6—C5—C10—C90.9 (2)
C3—N3—C2—S2−0.34 (17)C3—C5—C10—C9−178.30 (14)
C1—N1—C2—N3−166.94 (15)C1—N2—C11—O1−6.7 (2)
C1—N1—C2—S214.9 (2)C1—N2—C11—C12173.58 (14)
C4—S2—C2—N3−0.53 (12)O1—C11—C12—C17157.43 (15)
C4—S2—C2—N1177.67 (14)N2—C11—C12—C17−22.9 (2)
C2—N3—C3—C41.36 (19)O1—C11—C12—C13−20.5 (2)
C2—N3—C3—C5−176.47 (13)N2—C11—C12—C13159.15 (13)
N3—C3—C4—S2−1.76 (17)C17—C12—C13—C141.2 (2)
C5—C3—C4—S2175.84 (12)C11—C12—C13—C14179.22 (13)
C2—S2—C4—C31.25 (12)C12—C13—C14—C15−0.5 (2)
C4—C3—C5—C102.7 (2)C13—C14—C15—C160.1 (2)
N3—C3—C5—C10−179.82 (13)C14—C15—C16—C17−0.5 (2)
C4—C3—C5—C6−176.52 (15)C15—C16—C17—C121.2 (2)
N3—C3—C5—C61.0 (2)C13—C12—C17—C16−1.6 (2)
C10—C5—C6—C7−0.9 (2)C11—C12—C17—C16−179.47 (14)
C3—C5—C6—C7178.33 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.921.852.6145 (18)139
N2—H2···S1i0.932.693.5845 (15)162
C13—H13···O1ii0.952.443.299 (2)150
C17H12BrN3OS2F(000) = 1680
Mr = 418.33Dx = 1.681 Mg m3
Monoclinic, C2/cSynchrotron radiation, λ = 0.96990 Å
a = 37.210 (7) ÅCell parameters from 500 reflections
b = 4.0000 (8) Åθ = 4.0–33.0°
c = 28.450 (6) ŵ = 1.56 mm1
β = 128.69 (3)°T = 100 K
V = 3305.2 (18) Å3Prism, colourless
Z = 80.07 × 0.05 × 0.03 mm
MAR CCD diffractometer2523 reflections with I > 2σ(I)
φ scanRint = 0.065
Absorption correction: multi-scan (SCALA; Evans, 2006)θmax = 38.4°, θmin = 4.0°
Tmin = 0.880, Tmax = 0.930h = −44→44
13698 measured reflectionsk = −4→4
3267 independent reflectionsl = −32→32
Refinement on F2Primary atom site location: difference Fourier map
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.02P)2] where P = (Fo2 + 2Fc2)/3
3267 reflections(Δ/σ)max = 0.002
217 parametersΔρmax = 0.62 e Å3
0 restraintsΔρmin = −0.78 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
Br10.66455 (2)0.24056 (7)0.96731 (2)0.02282 (14)
S10.67189 (2)0.95707 (16)0.58750 (3)0.02136 (19)
S20.70200 (2)0.97423 (15)0.71326 (3)0.01827 (18)
O10.55011 (6)0.3045 (5)0.53088 (9)0.0239 (5)
N10.62216 (7)0.6652 (5)0.61537 (10)0.0176 (5)
H10.59690.55510.60170.021*
N20.59498 (7)0.6073 (5)0.51692 (9)0.0194 (5)
H20.59690.67360.48900.023*
N30.64079 (7)0.6390 (5)0.71031 (9)0.0178 (5)
C10.62849 (9)0.7359 (6)0.57480 (13)0.0183 (7)
C20.65111 (9)0.7460 (6)0.67684 (13)0.0173 (6)
C30.67476 (9)0.7355 (6)0.76996 (13)0.0167 (6)
C40.70985 (8)0.9180 (6)0.77919 (12)0.0197 (6)
H40.73531.00290.81720.024*
C50.67149 (8)0.6265 (6)0.81672 (11)0.0175 (6)
C60.71033 (9)0.6346 (7)0.87798 (12)0.0213 (6)
H60.73870.71760.88940.026*
C70.70779 (8)0.5233 (6)0.92191 (12)0.0219 (7)
H70.73430.52860.96310.026*
C80.66619 (8)0.4035 (6)0.90546 (12)0.0193 (6)
C90.62698 (9)0.3949 (7)0.84512 (12)0.0223 (6)
H90.59860.31410.83400.027*
C100.63006 (9)0.5062 (6)0.80154 (12)0.0216 (6)
H100.60340.50060.76040.026*
C110.55924 (8)0.3889 (6)0.49790 (12)0.0187 (6)
C120.53267 (9)0.2627 (6)0.43455 (13)0.0184 (7)
C130.48960 (8)0.1152 (7)0.40853 (12)0.0216 (6)
H130.47850.10020.43080.026*
C140.46331 (9)−0.0089 (6)0.34991 (12)0.0239 (7)
H140.4341−0.10620.33210.029*
C150.47950 (9)0.0089 (6)0.31750 (13)0.0253 (7)
H150.4613−0.07540.27750.030*
C160.52255 (9)0.1505 (7)0.34332 (13)0.0262 (7)
H160.53370.16120.32100.031*
C170.54912 (9)0.2757 (6)0.40176 (13)0.0225 (7)
H170.57850.37020.41940.027*
U11U22U33U12U13U23
Br10.0213 (2)0.0297 (2)0.0189 (2)0.00396 (11)0.01329 (17)0.00383 (11)
S10.0214 (3)0.0250 (3)0.0184 (4)−0.0048 (3)0.0128 (3)−0.0023 (3)
S20.0148 (3)0.0215 (3)0.0161 (4)−0.0005 (2)0.0085 (3)−0.0005 (2)
O10.0196 (10)0.0343 (11)0.0182 (11)−0.0039 (8)0.0119 (9)0.0011 (8)
N10.0130 (10)0.0241 (11)0.0136 (12)−0.0010 (8)0.0073 (10)0.0011 (9)
N20.0181 (10)0.0249 (12)0.0119 (11)−0.0010 (9)0.0078 (9)0.0018 (9)
N30.0145 (10)0.0206 (11)0.0136 (11)0.0014 (9)0.0066 (9)0.0006 (9)
C10.0154 (13)0.0199 (13)0.0149 (15)0.0050 (9)0.0072 (12)0.0032 (9)
C20.0154 (13)0.0217 (14)0.0132 (14)0.0026 (9)0.0082 (12)0.0013 (9)
C30.0144 (13)0.0169 (13)0.0156 (15)0.0024 (9)0.0079 (12)−0.0009 (9)
C40.0179 (12)0.0214 (13)0.0144 (14)0.0000 (10)0.0075 (11)−0.0006 (10)
C50.0171 (12)0.0196 (12)0.0132 (13)0.0035 (10)0.0083 (11)0.0004 (10)
C60.0141 (12)0.0292 (14)0.0185 (15)0.0000 (11)0.0091 (12)0.0000 (11)
C70.0141 (12)0.0308 (15)0.0129 (14)0.0024 (10)0.0046 (11)−0.0020 (10)
C80.0187 (12)0.0231 (13)0.0160 (14)0.0038 (10)0.0108 (11)0.0004 (10)
C90.0186 (13)0.0268 (14)0.0211 (15)−0.0028 (11)0.0122 (12)−0.0021 (11)
C100.0169 (12)0.0291 (14)0.0146 (14)0.0000 (10)0.0078 (11)−0.0017 (10)
C110.0131 (12)0.0221 (13)0.0142 (14)0.0019 (10)0.0054 (11)0.0031 (10)
C120.0135 (13)0.0212 (14)0.0144 (15)0.0023 (9)0.0057 (12)0.0015 (9)
C130.0174 (13)0.0244 (14)0.0193 (15)0.0022 (11)0.0097 (12)0.0018 (11)
C140.0148 (13)0.0256 (14)0.0218 (15)−0.0017 (10)0.0068 (12)−0.0014 (11)
C150.0212 (13)0.0269 (15)0.0161 (14)0.0000 (10)0.0059 (12)−0.0025 (11)
C160.0268 (15)0.0312 (15)0.0199 (15)−0.0015 (12)0.0142 (13)−0.0025 (12)
C170.0153 (13)0.0269 (15)0.0186 (16)−0.0029 (10)0.0073 (13)−0.0004 (10)
Br1—C81.913 (3)C6—H60.9500
S1—C11.670 (3)C7—C81.393 (4)
S2—C41.723 (3)C7—H70.9500
S2—C21.743 (3)C8—C91.395 (4)
O1—C111.228 (4)C9—C101.388 (4)
N1—C11.345 (4)C9—H90.9500
N1—C21.403 (4)C10—H100.9500
N1—H10.8800C11—C121.501 (4)
N2—C111.387 (3)C12—C171.401 (5)
N2—C11.401 (3)C12—C131.408 (4)
N2—H20.8800C13—C141.394 (4)
N3—C21.302 (4)C13—H130.9500
N3—C31.394 (3)C14—C151.383 (4)
C3—C41.370 (4)C14—H140.9500
C3—C51.476 (4)C15—C161.398 (4)
C4—H40.9500C15—H150.9500
C5—C101.401 (4)C16—C171.392 (4)
C5—C61.407 (3)C16—H160.9500
C6—C71.385 (4)C17—H170.9500
C4—S2—C287.75 (14)C7—C8—Br1118.4 (2)
C1—N1—C2127.7 (2)C9—C8—Br1120.9 (2)
C1—N1—H1116.1C10—C9—C8119.0 (3)
C2—N1—H1116.1C10—C9—H9120.5
C11—N2—C1128.4 (3)C8—C9—H9120.5
C11—N2—H2115.8C9—C10—C5121.6 (2)
C1—N2—H2115.8C9—C10—H10119.2
C2—N3—C3110.0 (2)C5—C10—H10119.2
N1—C1—N2115.3 (2)O1—C11—N2122.0 (3)
N1—C1—S1126.2 (2)O1—C11—C12122.4 (2)
N2—C1—S1118.6 (2)N2—C11—C12115.6 (3)
N3—C2—N1119.2 (2)C17—C12—C13119.6 (3)
N3—C2—S2116.4 (2)C17—C12—C11123.6 (2)
N1—C2—S2124.3 (2)C13—C12—C11116.8 (3)
C4—C3—N3114.3 (3)C14—C13—C12119.7 (3)
C4—C3—C5126.2 (2)C14—C13—H13120.2
N3—C3—C5119.5 (2)C12—C13—H13120.2
C3—C4—S2111.6 (2)C15—C14—C13120.4 (3)
C3—C4—H4124.2C15—C14—H14119.8
S2—C4—H4124.2C13—C14—H14119.8
C10—C5—C6118.1 (3)C14—C15—C16120.3 (3)
C10—C5—C3121.2 (2)C14—C15—H15119.9
C6—C5—C3120.7 (2)C16—C15—H15119.9
C7—C6—C5120.9 (3)C17—C16—C15119.9 (3)
C7—C6—H6119.5C17—C16—H16120.1
C5—C6—H6119.5C15—C16—H16120.1
C6—C7—C8119.7 (2)C16—C17—C12120.2 (3)
C6—C7—H7120.1C16—C17—H17119.9
C8—C7—H7120.1C12—C17—H17119.9
C7—C8—C9120.7 (3)
C2—N1—C1—N2176.6 (2)C6—C7—C8—C9−0.1 (4)
C2—N1—C1—S1−3.2 (4)C6—C7—C8—Br1178.3 (2)
C11—N2—C1—N1−7.5 (4)C7—C8—C9—C100.3 (4)
C11—N2—C1—S1172.2 (2)Br1—C8—C9—C10−178.0 (2)
C3—N3—C2—N1177.7 (2)C8—C9—C10—C50.0 (4)
C3—N3—C2—S2−0.5 (3)C6—C5—C10—C9−0.5 (4)
C1—N1—C2—N3−175.8 (2)C3—C5—C10—C9178.3 (2)
C1—N1—C2—S22.2 (4)C1—N2—C11—O17.4 (4)
C4—S2—C2—N30.2 (2)C1—N2—C11—C12−172.4 (2)
C4—S2—C2—N1−177.9 (2)O1—C11—C12—C17−161.6 (2)
C2—N3—C3—C40.6 (3)N2—C11—C12—C1718.2 (3)
C2—N3—C3—C5−176.9 (2)O1—C11—C12—C1316.4 (4)
N3—C3—C4—S2−0.5 (3)N2—C11—C12—C13−163.8 (2)
C5—C3—C4—S2176.8 (2)C17—C12—C13—C14−1.6 (4)
C2—S2—C4—C30.17 (19)C11—C12—C13—C14−179.6 (2)
C4—C3—C5—C10165.8 (2)C12—C13—C14—C150.7 (4)
N3—C3—C5—C10−17.0 (4)C13—C14—C15—C160.3 (4)
C4—C3—C5—C6−15.5 (4)C14—C15—C16—C17−0.4 (4)
N3—C3—C5—C6161.7 (2)C15—C16—C17—C12−0.5 (4)
C10—C5—C6—C70.7 (4)C13—C12—C17—C161.5 (4)
C3—C5—C6—C7−178.1 (2)C11—C12—C17—C16179.4 (2)
C5—C6—C7—C8−0.4 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.881.932.644 (3)138
N2—H2···Br1i0.882.973.692 (3)141
C13—H13···O1ii0.952.533.340 (4)144
  15 in total

1.  Urea- and thiourea-substituted cinchona alkaloid derivatives as highly efficient bifunctional organocatalysts for the asymmetric addition of malonate to nitroalkenes: inversion of configuration at C9 dramatically improves catalyst performance.

Authors:  Séamus H McCooey; Stephen J Connon
Journal:  Angew Chem Int Ed Engl       Date:  2005-10-07       Impact factor: 15.336

2.  Organocatalysis mediated by (thio)urea derivatives.

Authors:  Stephen J Connon
Journal:  Chemistry       Date:  2006-07-17       Impact factor: 5.236

3.  Synthesis, characterization and urease inhibition, in vitro anticancer and antileishmanial studies of Ni(II) complexes with N,N,N'-trisubstituted thioureas.

Authors:  Muhammad Khawar Rauf; Samad Yaseen; Amin Badshah; Sumera Zaib; Raffia Arshad; Muhammad Nawaz Tahir; Jamshed Iqbal
Journal:  J Biol Inorg Chem       Date:  2015-01-22       Impact factor: 3.358

4.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

5.  Metal-free organocatalysis through explicit hydrogen bonding interactions.

Authors:  Peter R Schreiner
Journal:  Chem Soc Rev       Date:  2003-09       Impact factor: 54.564

6.  Synthesis of carbocyclic and heterocyclic fused quinolines by cascade radical annulations of unsaturated N-aryl thiocarbamates, thioamides, and thioureas.

Authors:  Wu Du; Dennis P Curran
Journal:  Org Lett       Date:  2003-05-15       Impact factor: 6.005

7.  2-Nitrophenylcarbamoyl-(S)-prolyl-(S)-3-(2-naphthyl)alanyl-N-benzyl-N - methylamide (SDZ NKT 343), a potent human NK1 tachykinin receptor antagonist with good oral analgesic activity in chronic pain models.

Authors:  C Walpole; S Y Ko; M Brown; D Beattie; E Campbell; F Dickenson; S Ewan; G A Hughes; M Lemaire; J Lerpiniere; S Patel; L Urban
Journal:  J Med Chem       Date:  1998-08-13       Impact factor: 7.446

Review 8.  Asymmetric catalysis by chiral hydrogen-bond donors.

Authors:  Mark S Taylor; Eric N Jacobsen
Journal:  Angew Chem Int Ed Engl       Date:  2006-02-27       Impact factor: 15.336

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.