Literature DB >> 23468781

Ethyl 2-(3-methyl-5-sulfanyl-idene-4,5-dihydro-1H-1,2,4-triazol-4-yl)acetate.

Zbigniew Karczmarzyk1, Monika Pitucha, Waldemar Wysocki, Andrzej Fruziński, Ewa Olender.   

Abstract

The title compound, C7H11N3O2S, exists in the 5-thioxo tautomeric form. The 1,2,4-triazoline ring is essentially planar, with a maximum deviation of 0.010 (2) Å for the substituted N atom. The ethyl acetate substituent is almost planar, with a maximum deviation of 0.061 (4) Å for the methyl-ene C atom of the eth-oxy group. The angle between the mean plane of this substituent and the mean plane of the 1,2,4-triazoline ring is 89.74 (8)°. In the crystal, mol-ecules are linked by a combination of N-H⋯S, C-H⋯N and C-H⋯O hydrogen bonds into chains parallel to [100].

Entities:  

Year:  2012        PMID: 23468781      PMCID: PMC3588816          DOI: 10.1107/S1600536812044716

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on the title compound, see: Saadeh et al. (2010 ▶); Akhtar et al. (2008 ▶); Al-Omar et al. (2010 ▶). For the biological activity of 1,2,4-triazoline-thio­nes, see: Pitucha et al. (2010 ▶). For their synthesis, see: Bany & Dobosz (1972 ▶). For related structures, see: Kruszynski et al. (2007 ▶); Siwek et al. (2008 ▶). For graph-set motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C7H11N3O2S M = 201.25 Monoclinic, a = 6.4438 (19) Å b = 15.2328 (15) Å c = 9.9672 (8) Å β = 98.416 (19)° V = 967.8 (3) Å3 Z = 4 Mo Kα radiation μ = 0.31 mm−1 T = 293 K 0.60 × 0.30 × 0.30 mm

Data collection

Kuma KM-4 four-circle diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.754, T max = 0.869 2979 measured reflections 2837 independent reflections 1571 reflections with I > 2σ(I) R int = 0.069 2 standard reflections every 100 reflections intensity decay: 8.9%

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.198 S = 0.93 2837 reflections 123 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.64 e Å−3 Δρmin = −0.48 e Å−3 Data collection: KM4B8 (Gałdecki et al., 1996 ▶); cell refinement: KM4B8; data reduction: DATAPROC (Gałdecki et al., 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812044716/fj2601sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812044716/fj2601Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812044716/fj2601Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H11N3O2SF(000) = 424
Mr = 201.25Dx = 1.381 Mg m3
Monoclinic, P21/cMelting point = 446–447 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 6.4438 (19) ÅCell parameters from 70 reflections
b = 15.2328 (15) Åθ = 2.7–11.9°
c = 9.9672 (8) ŵ = 0.31 mm1
β = 98.416 (19)°T = 293 K
V = 967.8 (3) Å3Prism, colourless
Z = 40.60 × 0.30 × 0.30 mm
Kuma KM-4 four-circle diffractometer1571 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.069
Graphite monochromatorθmax = 30.1°, θmin = 2.5°
ω–2θ scansh = −9→8
Absorption correction: ψ scan (North et al., 1968)k = 0→21
Tmin = 0.754, Tmax = 0.869l = 0→14
2979 measured reflections2 standard reflections every 100 reflections
2837 independent reflections intensity decay: 8.9%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: difference Fourier map
wR(F2) = 0.198H atoms treated by a mixture of independent and constrained refinement
S = 0.93w = 1/[σ2(Fo2) + (0.1344P)2] where P = (Fo2 + 2Fc2)/3
2837 reflections(Δ/σ)max < 0.001
123 parametersΔρmax = 0.64 e Å3
0 restraintsΔρmin = −0.48 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S60.29109 (11)0.08274 (5)0.48884 (8)0.0493 (3)
O100.2086 (3)0.33096 (15)0.4137 (2)0.0553 (6)
O110.5003 (3)0.34124 (13)0.31670 (19)0.0423 (5)
N1−0.1100 (3)0.08964 (16)0.3569 (2)0.0384 (5)
H1−0.152 (6)0.053 (3)0.402 (4)0.058*
N2−0.2330 (3)0.13342 (15)0.2554 (2)0.0400 (5)
N40.0940 (3)0.17783 (14)0.2764 (2)0.0324 (4)
C3−0.1054 (4)0.18780 (18)0.2086 (2)0.0348 (5)
C50.0896 (4)0.11528 (17)0.3742 (2)0.0338 (5)
C7−0.1642 (4)0.2523 (2)0.0993 (3)0.0449 (6)
H7A−0.10730.23450.01980.067*
H7B−0.10930.30890.12820.067*
H7C−0.31430.25550.07880.067*
C80.2820 (4)0.22340 (18)0.2511 (2)0.0348 (5)
H8A0.26770.23990.15620.052*
H8B0.40140.18420.27000.052*
C90.3210 (4)0.30402 (17)0.3374 (2)0.0347 (5)
C120.5476 (5)0.4245 (2)0.3862 (4)0.0553 (8)
H12A0.55430.41660.48330.083*
H12B0.43860.46700.35610.083*
C130.7523 (7)0.4562 (3)0.3544 (5)0.0743 (11)
H13A0.86070.41580.39020.111*
H13B0.78180.51300.39440.111*
H13C0.74690.46040.25780.111*
U11U22U33U12U13U23
S60.0354 (4)0.0521 (4)0.0567 (5)−0.0037 (3)−0.0051 (3)0.0156 (3)
O100.0513 (12)0.0536 (13)0.0663 (13)−0.0048 (10)0.0263 (10)−0.0162 (10)
O110.0342 (9)0.0406 (10)0.0530 (11)−0.0086 (8)0.0094 (7)−0.0052 (8)
N10.0306 (10)0.0387 (12)0.0460 (12)−0.0034 (9)0.0064 (8)0.0086 (10)
N20.0278 (10)0.0463 (12)0.0457 (12)−0.0014 (9)0.0046 (8)0.0046 (10)
N40.0247 (9)0.0336 (10)0.0392 (10)−0.0001 (8)0.0061 (7)0.0002 (8)
C30.0280 (11)0.0398 (13)0.0367 (12)0.0024 (10)0.0052 (9)0.0003 (10)
C50.0300 (11)0.0302 (11)0.0411 (13)−0.0001 (9)0.0051 (9)0.0001 (10)
C70.0352 (14)0.0523 (16)0.0467 (15)0.0049 (12)0.0045 (11)0.0091 (12)
C80.0268 (11)0.0411 (13)0.0384 (12)−0.0036 (10)0.0115 (9)−0.0008 (10)
C90.0329 (12)0.0355 (12)0.0360 (12)0.0001 (10)0.0062 (9)0.0038 (10)
C120.0517 (17)0.0402 (15)0.072 (2)−0.0077 (13)0.0029 (15)−0.0088 (15)
C130.063 (2)0.057 (2)0.105 (3)−0.0248 (18)0.019 (2)−0.007 (2)
S6—C51.674 (3)C7—H7A0.9600
O10—C91.197 (3)C7—H7B0.9600
O11—C91.330 (3)C7—H7C0.9600
O11—C121.455 (4)C8—C91.499 (4)
N1—C51.331 (3)C8—H8A0.9700
N1—N21.364 (3)C8—H8B0.9700
N1—H10.79 (4)C12—C131.482 (5)
N2—C31.301 (3)C12—H12A0.9700
N4—C51.367 (3)C12—H12B0.9700
N4—C31.369 (3)C13—H13A0.9600
N4—C81.450 (3)C13—H13B0.9600
C3—C71.475 (4)C13—H13C0.9600
C9—O11—C12115.0 (2)N4—C8—H8A109.3
C5—N1—N2113.5 (2)C9—C8—H8A109.3
C5—N1—H1123 (3)N4—C8—H8B109.3
N2—N1—H1124 (3)C9—C8—H8B109.3
C3—N2—N1104.3 (2)H8A—C8—H8B108.0
C5—N4—C3108.3 (2)O10—C9—O11124.9 (3)
C5—N4—C8124.3 (2)O10—C9—C8125.4 (2)
C3—N4—C8127.5 (2)O11—C9—C8109.7 (2)
N2—C3—N4110.5 (2)O11—C12—C13108.2 (3)
N2—C3—C7125.5 (2)O11—C12—H12A110.1
N4—C3—C7124.0 (2)C13—C12—H12A110.1
N1—C5—N4103.4 (2)O11—C12—H12B110.1
N1—C5—S6129.8 (2)C13—C12—H12B110.1
N4—C5—S6126.74 (19)H12A—C12—H12B108.4
C3—C7—H7A109.5C12—C13—H13A109.5
C3—C7—H7B109.5C12—C13—H13B109.5
H7A—C7—H7B109.5H13A—C13—H13B109.5
C3—C7—H7C109.5C12—C13—H13C109.5
H7A—C7—H7C109.5H13A—C13—H13C109.5
H7B—C7—H7C109.5H13B—C13—H13C109.5
N4—C8—C9111.52 (19)
C5—N1—N2—C30.0 (3)C8—N4—C5—N1−177.5 (2)
N1—N2—C3—N41.2 (3)C3—N4—C5—S6−176.9 (2)
N1—N2—C3—C7−178.1 (3)C8—N4—C5—S63.8 (4)
C5—N4—C3—N2−1.9 (3)C5—N4—C8—C9−88.1 (3)
C8—N4—C3—N2177.3 (2)C3—N4—C8—C992.7 (3)
C5—N4—C3—C7177.4 (2)C12—O11—C9—O10−5.1 (4)
C8—N4—C3—C7−3.3 (4)C12—O11—C9—C8175.1 (2)
N2—N1—C5—N4−1.1 (3)N4—C8—C9—O10−3.2 (4)
N2—N1—C5—S6177.5 (2)N4—C8—C9—O11176.7 (2)
C3—N4—C5—N11.8 (3)C9—O11—C12—C13179.2 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···S6i0.79 (4)2.56 (4)3.339 (3)170 (4)
C8—H8B···N2ii0.972.503.407 (3)155
C13—H13A···O10ii0.962.573.482 (5)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯S6i 0.79 (4)2.56 (4)3.339 (3)170 (4)
C8—H8B⋯N2ii 0.972.503.407 (3)155
C13—H13A⋯O10ii 0.962.573.482 (5)159

Symmetry codes: (i) ; (ii) .

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