Literature DB >> 23424446

3-Benzyl-4-ethyl-1H-1,2,4-triazole-5(4H)-thione.

Zbigniew Karczmarzyk1, Monika Pitucha, Waldemar Wysocki, Anna Pachuta-Stec, Andrzej Stańczuk.   

Abstract

The title compound, C(11)H(13)N(3)S, exists in the 5-thioxo tautomeric form. The benzene ring exhibits disorder with a refined ratio of 0.77 (2):0.23 (2) for components A and B with a common bridgehead C atom. The 1,2,4-triazole ring is essentially planar, with a maximum deviation of 0.002 (3) Å for the benzyl-substituted C atom, and forms dihedral angles of 88.94 (18) and 86.56 (49)° with the benzene rings of components A and B, respectively. The angle between the plane of the ethyl chain and the mean plane of 1,2,4-triazole ring is 88.55 (15)° and this conformation is stabilized by an intra-molecular C-H⋯S contact. In the crystal, pairs of N-H⋯S hydrogen bonds link mol-ecules into inversion dimers. π-π inter-actions are observed between the triazole and benzene rings, with centroid-centroid separations of 3.547 (4) and 3.544 (12) Å for components A and B, and slippages of 0.49 (6) and 0.58 (15) Å, respectively.

Entities:  

Year:  2013        PMID: 23424446      PMCID: PMC3569223          DOI: 10.1107/S1600536812051276

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on 1,2,4-triazole-5-thio­nes, see: Saadeh et al. (2010 ▶); Akhtar et al. (2008 ▶); Al-Omar et al. (2010 ▶). For their biological activity, see: Pitucha et al. (2010 ▶). For the synthesis, see: Dobosz & Pachuta-Stec (1996 ▶). For related structures, see: Karczmarzyk et al. (2012 ▶); Kruszynski et al. (2007 ▶); Siwek et al. (2008 ▶). For graph-set motifs, see Bernstein et al. (1995 ▶).

Experimental

Crystal data

C11H13N3S M = 219.30 Monoclinic, a = 7.3731 (5) Å b = 8.9408 (19) Å c = 16.9936 (8) Å β = 91.892 (4)° V = 1119.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 296 K 0.55 × 0.20 × 0.20 mm

Data collection

Kuma KM-4 four-circle diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.834, T max = 0.852 3392 measured reflections 3289 independent reflections 1385 reflections with I > 2σ(I) R int = 0.039 2 standard reflections every 100 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.156 S = 0.98 3289 reflections 187 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.20 e Å−3 Data collection: KM4B8 (Gałdecki et al., 1996 ▶); cell refinement: KM4B8; data reduction: DATAPROC (Gałdecki et al., 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812051276/fy2077sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812051276/fy2077Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812051276/fy2077Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H13N3SF(000) = 464
Mr = 219.30Dx = 1.301 Mg m3
Monoclinic, P21/cMelting point: 425 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 7.3731 (5) ÅCell parameters from 67 reflections
b = 8.9408 (19) Åθ = 3.6–11.2°
c = 16.9936 (8) ŵ = 0.26 mm1
β = 91.892 (4)°T = 296 K
V = 1119.6 (3) Å3Prism, colourless
Z = 40.55 × 0.20 × 0.20 mm
Kuma KM-4 four-circle diffractometer1385 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.039
Graphite monochromatorθmax = 30.1°, θmin = 2.4°
ω–2θ scansh = −10→10
Absorption correction: ψ scan (North et al., 1968)k = 0→12
Tmin = 0.834, Tmax = 0.852l = 0→23
3392 measured reflections2 standard reflections every 100 reflections
3289 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.156w = 1/[σ2(Fo2) + (0.062P)2 + 0.2203P] where P = (Fo2 + 2Fc2)/3
S = 0.98(Δ/σ)max < 0.001
3289 reflectionsΔρmax = 0.23 e Å3
187 parametersΔρmin = −0.20 e Å3
6 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.012 (3)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S6−0.22230 (10)0.33538 (8)0.53097 (4)0.0567 (3)
N10.0496 (3)0.3323 (3)0.42647 (13)0.0473 (6)
H10.101 (4)0.412 (4)0.4446 (18)0.071*
N20.1063 (3)0.2595 (3)0.36067 (13)0.0525 (6)
N4−0.1519 (3)0.1693 (2)0.40086 (12)0.0445 (5)
C3−0.0184 (4)0.1613 (3)0.34683 (16)0.0516 (7)
C5−0.1070 (3)0.2807 (3)0.45287 (15)0.0412 (6)
C7−0.3151 (4)0.0780 (3)0.40482 (17)0.0563 (8)
H7A−0.35270.04660.35210.084*
H7B−0.41220.13750.42590.084*
C8−0.2841 (5)−0.0576 (4)0.4557 (2)0.0776 (11)
H8A−0.2561−0.02680.50880.116*
H8B−0.1847−0.11460.43620.116*
H8C−0.3917−0.11820.45450.116*
C9−0.0260 (4)0.0531 (4)0.2795 (2)0.0834 (12)
H91−0.10340.09420.23760.125*
H92−0.0813−0.03910.29690.125*
C100.1561 (3)0.0173 (3)0.24685 (16)0.0456 (6)
C11A0.1986 (18)0.0849 (15)0.1776 (6)0.0499 (18)0.77 (2)
H11A0.11750.15310.15470.075*0.77 (2)
C12A0.3582 (15)0.0546 (11)0.1410 (6)0.062 (2)0.77 (2)
H12A0.38370.10270.09410.093*0.77 (2)
C13A0.4806 (9)−0.0468 (11)0.1733 (7)0.066 (2)0.77 (2)
H13A0.5890−0.06730.14900.100*0.77 (2)
C14A0.4388 (12)−0.1159 (11)0.2417 (7)0.071 (3)0.77 (2)
H14A0.5179−0.18700.26330.107*0.77 (2)
C15A0.2833 (14)−0.0828 (10)0.2790 (5)0.068 (2)0.77 (2)
H15A0.2613−0.12790.32700.102*0.77 (2)
C11B0.240 (5)0.060 (6)0.179 (2)0.069 (11)0.23 (2)
H11B0.18730.13160.14630.103*0.23 (2)
C12B0.403 (3)−0.004 (4)0.1598 (16)0.052 (8)0.23 (2)
H12B0.46080.01850.11340.077*0.23 (2)
C13B0.475 (3)−0.104 (4)0.214 (2)0.074 (12)0.23 (2)
H13B0.5909−0.14140.20530.112*0.23 (2)
C14B0.391 (3)−0.154 (3)0.280 (2)0.072 (7)0.23 (2)
H14B0.4437−0.22720.31260.108*0.23 (2)
C15B0.225 (3)−0.093 (3)0.2963 (16)0.053 (6)0.23 (2)
H15B0.1608−0.12440.33950.079*0.23 (2)
U11U22U33U12U13U23
S60.0669 (5)0.0494 (4)0.0553 (4)−0.0142 (4)0.0264 (3)−0.0107 (4)
N10.0485 (13)0.0404 (12)0.0538 (13)−0.0110 (11)0.0150 (10)−0.0100 (11)
N20.0480 (13)0.0527 (13)0.0577 (15)−0.0092 (11)0.0180 (11)−0.0129 (12)
N40.0407 (11)0.0443 (12)0.0491 (12)−0.0089 (10)0.0113 (9)−0.0094 (11)
C30.0438 (14)0.0560 (16)0.0558 (16)−0.0092 (14)0.0160 (12)−0.0166 (14)
C50.0429 (14)0.0345 (12)0.0465 (15)−0.0038 (11)0.0069 (11)0.0005 (11)
C70.0447 (15)0.0585 (18)0.0665 (19)−0.0148 (14)0.0138 (13)−0.0140 (15)
C80.080 (2)0.0522 (18)0.102 (3)−0.0176 (17)0.031 (2)−0.0055 (18)
C90.0629 (19)0.101 (3)0.089 (2)−0.0244 (19)0.0288 (17)−0.054 (2)
C100.0451 (15)0.0458 (15)0.0465 (15)−0.0063 (12)0.0078 (12)−0.0113 (13)
C11A0.052 (4)0.043 (4)0.055 (4)0.004 (3)0.006 (3)−0.004 (2)
C12A0.062 (5)0.063 (5)0.062 (4)0.001 (3)0.024 (3)−0.004 (3)
C13A0.043 (4)0.077 (5)0.080 (5)0.008 (3)0.014 (4)−0.027 (4)
C14A0.063 (6)0.063 (5)0.087 (8)0.018 (4)−0.015 (5)0.002 (4)
C15A0.091 (6)0.063 (4)0.050 (4)−0.020 (5)−0.003 (4)0.007 (3)
C11B0.054 (19)0.06 (2)0.09 (2)0.006 (12)−0.022 (13)−0.003 (13)
C12B0.032 (14)0.07 (2)0.052 (16)−0.003 (12)0.015 (12)−0.019 (14)
C13B0.051 (12)0.10 (2)0.07 (2)−0.041 (13)0.029 (13)−0.041 (18)
C14B0.074 (15)0.049 (11)0.094 (19)0.016 (10)−0.004 (13)0.003 (11)
C15B0.033 (10)0.059 (12)0.067 (15)0.008 (9)0.003 (7)0.008 (8)
S6—C51.673 (3)C10—C11B1.379 (5)
N1—C51.335 (3)C10—C15A1.394 (7)
N1—N21.371 (3)C11A—C12A1.376 (9)
N1—H10.86 (3)C11A—H11A0.9300
N2—C31.288 (3)C12A—C13A1.381 (10)
N4—C51.365 (3)C12A—H12A0.9300
N4—C31.370 (3)C13A—C14A1.360 (11)
N4—C71.457 (3)C13A—H13A0.9300
C3—C91.498 (4)C14A—C15A1.361 (9)
C7—C81.502 (4)C14A—H14A0.9300
C7—H7A0.9700C15A—H15A0.9300
C7—H7B0.9700C11B—C12B1.380 (5)
C8—H8A0.9600C11B—H11B0.9300
C8—H8B0.9600C12B—C13B1.379 (5)
C8—H8C0.9600C12B—H12B0.9300
C9—C101.504 (4)C13B—C14B1.377 (5)
C9—H910.9700C13B—H13B0.9300
C9—H920.9700C14B—C15B1.379 (5)
C10—C11A1.369 (6)C14B—H14B0.9300
C10—C15B1.379 (5)C15B—H15B0.9300
C5—N1—N2113.6 (2)C15B—C10—C9103.9 (10)
C5—N1—H1123 (2)C11B—C10—C9133.0 (12)
N2—N1—H1123 (2)C15A—C10—C9126.1 (5)
C3—N2—N1103.7 (2)C10—C11A—C12A121.7 (8)
C5—N4—C3107.9 (2)C10—C11A—H11A119.2
C5—N4—C7124.2 (2)C12A—C11A—H11A119.2
C3—N4—C7127.9 (2)C11A—C12A—C13A120.5 (9)
N2—C3—N4111.5 (2)C11A—C12A—H12A119.8
N2—C3—C9126.0 (2)C13A—C12A—H12A119.8
N4—C3—C9122.4 (2)C14A—C13A—C12A118.3 (8)
N1—C5—N4103.2 (2)C14A—C13A—H13A120.8
N1—C5—S6129.3 (2)C12A—C13A—H13A120.8
N4—C5—S6127.47 (18)C13A—C14A—C15A121.1 (7)
N4—C7—C8111.6 (2)C13A—C14A—H14A119.4
N4—C7—H7A109.3C15A—C14A—H14A119.4
C8—C7—H7A109.3C14A—C15A—C10121.6 (5)
N4—C7—H7B109.3C14A—C15A—H15A119.2
C8—C7—H7B109.3C10—C15A—H15A119.2
H7A—C7—H7B108.0C10—C11B—C12B120.3 (17)
C7—C8—H8A109.5C10—C11B—H11B119.8
C7—C8—H8B109.5C12B—C11B—H11B119.8
H8A—C8—H8B109.5C13B—C12B—C11B115 (2)
C7—C8—H8C109.5C13B—C12B—H12B122.3
H8A—C8—H8C109.5C11B—C12B—H12B122.3
H8B—C8—H8C109.5C14B—C13B—C12B126 (2)
C3—C9—C10114.1 (3)C14B—C13B—H13B117.2
C3—C9—H91108.7C12B—C13B—H13B117.2
C10—C9—H91108.7C13B—C14B—C15B117 (2)
C3—C9—H92108.7C13B—C14B—H14B121.3
C10—C9—H92108.7C15B—C14B—H14B121.3
H91—C9—H92107.6C14B—C15B—C10118.3 (15)
C15B—C10—C11B122.5 (12)C14B—C15B—H15B120.8
C11A—C10—C15A116.8 (5)C10—C15B—H15B120.8
C11A—C10—C9117.1 (5)
C5—N1—N2—C3−0.1 (3)C3—C9—C10—C11B−105 (4)
N1—N2—C3—N40.3 (3)C3—C9—C10—C15A79.6 (7)
N1—N2—C3—C9178.3 (3)C15A—C10—C11A—C12A0.7 (18)
C5—N4—C3—N2−0.3 (3)C9—C10—C11A—C12A−177.0 (11)
C7—N4—C3—N2179.7 (3)C10—C11A—C12A—C13A0 (2)
C5—N4—C3—C9−178.5 (3)C11A—C12A—C13A—C14A0.4 (17)
C7—N4—C3—C91.6 (5)C12A—C13A—C14A—C15A−2.2 (16)
N2—N1—C5—N4−0.1 (3)C13A—C14A—C15A—C103.3 (16)
N2—N1—C5—S6179.3 (2)C11A—C10—C15A—C14A−2.5 (14)
C3—N4—C5—N10.2 (3)C9—C10—C15A—C14A175.0 (7)
C7—N4—C5—N1−179.8 (2)C15B—C10—C11B—C12B−2 (7)
C3—N4—C5—S6−179.2 (2)C9—C10—C11B—C12B−173 (3)
C7—N4—C5—S60.8 (4)C10—C11B—C12B—C13B−3 (7)
C5—N4—C7—C8−88.5 (3)C11B—C12B—C13B—C14B7 (5)
C3—N4—C7—C891.4 (3)C12B—C13B—C14B—C15B−4 (5)
N2—C3—C9—C1025.1 (5)C13B—C14B—C15B—C10−2 (5)
N4—C3—C9—C10−157.0 (3)C11B—C10—C15B—C14B5 (5)
C3—C9—C10—C11A−102.9 (9)C9—C10—C15B—C14B178 (3)
C3—C9—C10—C15B83.1 (16)
D—H···AD—HH···AD···AD—H···A
C7—H7B···S60.972.853.204 (3)103
N1—H1···S6i0.86 (3)2.46 (3)3.303 (3)167 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C7—H7B⋯S60.972.853.204 (3)103
N1—H1⋯S6i 0.86 (3)2.46 (3)3.303 (3)167 (3)

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Syntheses, urease inhibition, and antimicrobial studies of some chiral 3-substituted-4-amino-5-thioxo-1H,4H-1,2,4-triazoles.

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Journal:  Med Chem       Date:  2008-11       Impact factor: 2.745

3.  Synthesis, antimicrobial, and anti-inflammatory activities of novel 5-(1-adamantyl)-4-arylideneamino-3-mercapto-1,2,4-triazoles and related derivatives.

Authors:  Mohamed A Al-Omar; Ebtehal S Al-Abdullah; Ihsan A Shehata; Elsayed E Habib; Tarek M Ibrahim; Ali A El-Emam
Journal:  Molecules       Date:  2010-04-09       Impact factor: 4.411

4.  Ethyl 2-(3-methyl-5-sulfanyl-idene-4,5-dihydro-1H-1,2,4-triazol-4-yl)acetate.

Authors:  Zbigniew Karczmarzyk; Monika Pitucha; Waldemar Wysocki; Andrzej Fruziński; Ewa Olender
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-03
  4 in total

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