| Literature DB >> 23424446 |
Zbigniew Karczmarzyk1, Monika Pitucha, Waldemar Wysocki, Anna Pachuta-Stec, Andrzej Stańczuk.
Abstract
The title compound, C(11)H(13)N(3)S, exists in the 5-thioxo tautomeric form. The benzene ring exhibits disorder with a refined ratio of 0.77 (2):0.23 (2) for components A and B with a common bridgehead C atom. The 1,2,4-triazole ring is essentially planar, with a maximum deviation of 0.002 (3) Å for the benzyl-substituted C atom, and forms dihedral angles of 88.94 (18) and 86.56 (49)° with the benzene rings of components A and B, respectively. The angle between the plane of the ethyl chain and the mean plane of 1,2,4-triazole ring is 88.55 (15)° and this conformation is stabilized by an intra-molecular C-H⋯S contact. In the crystal, pairs of N-H⋯S hydrogen bonds link mol-ecules into inversion dimers. π-π inter-actions are observed between the triazole and benzene rings, with centroid-centroid separations of 3.547 (4) and 3.544 (12) Å for components A and B, and slippages of 0.49 (6) and 0.58 (15) Å, respectively.Entities:
Year: 2013 PMID: 23424446 PMCID: PMC3569223 DOI: 10.1107/S1600536812051276
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H13N3S | |
| Monoclinic, | Melting point: 425 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 67 reflections | |
| θ = 3.6–11.2° | |
| µ = 0.26 mm−1 | |
| β = 91.892 (4)° | |
| Prism, colourless | |
| 0.55 × 0.20 × 0.20 mm |
| Kuma KM-4 four-circle diffractometer | 1385 reflections with |
| Radiation source: fine-focus sealed tube | |
| Graphite monochromator | θmax = 30.1°, θmin = 2.4° |
| ω–2θ scans | |
| Absorption correction: ψ scan (North | |
| 3392 measured reflections | 2 standard reflections every 100 reflections |
| 3289 independent reflections | intensity decay: 1% |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3289 reflections | Δρmax = 0.23 e Å−3 |
| 187 parameters | Δρmin = −0.20 e Å−3 |
| 6 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.012 (3) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| S6 | −0.22230 (10) | 0.33538 (8) | 0.53097 (4) | 0.0567 (3) | |
| N1 | 0.0496 (3) | 0.3323 (3) | 0.42647 (13) | 0.0473 (6) | |
| H1 | 0.101 (4) | 0.412 (4) | 0.4446 (18) | 0.071* | |
| N2 | 0.1063 (3) | 0.2595 (3) | 0.36067 (13) | 0.0525 (6) | |
| N4 | −0.1519 (3) | 0.1693 (2) | 0.40086 (12) | 0.0445 (5) | |
| C3 | −0.0184 (4) | 0.1613 (3) | 0.34683 (16) | 0.0516 (7) | |
| C5 | −0.1070 (3) | 0.2807 (3) | 0.45287 (15) | 0.0412 (6) | |
| C7 | −0.3151 (4) | 0.0780 (3) | 0.40482 (17) | 0.0563 (8) | |
| H7A | −0.3527 | 0.0466 | 0.3521 | 0.084* | |
| H7B | −0.4122 | 0.1375 | 0.4259 | 0.084* | |
| C8 | −0.2841 (5) | −0.0576 (4) | 0.4557 (2) | 0.0776 (11) | |
| H8A | −0.2561 | −0.0268 | 0.5088 | 0.116* | |
| H8B | −0.1847 | −0.1146 | 0.4362 | 0.116* | |
| H8C | −0.3917 | −0.1182 | 0.4545 | 0.116* | |
| C9 | −0.0260 (4) | 0.0531 (4) | 0.2795 (2) | 0.0834 (12) | |
| H91 | −0.1034 | 0.0942 | 0.2376 | 0.125* | |
| H92 | −0.0813 | −0.0391 | 0.2969 | 0.125* | |
| C10 | 0.1561 (3) | 0.0173 (3) | 0.24685 (16) | 0.0456 (6) | |
| C11A | 0.1986 (18) | 0.0849 (15) | 0.1776 (6) | 0.0499 (18) | 0.77 (2) |
| H11A | 0.1175 | 0.1531 | 0.1547 | 0.075* | 0.77 (2) |
| C12A | 0.3582 (15) | 0.0546 (11) | 0.1410 (6) | 0.062 (2) | 0.77 (2) |
| H12A | 0.3837 | 0.1027 | 0.0941 | 0.093* | 0.77 (2) |
| C13A | 0.4806 (9) | −0.0468 (11) | 0.1733 (7) | 0.066 (2) | 0.77 (2) |
| H13A | 0.5890 | −0.0673 | 0.1490 | 0.100* | 0.77 (2) |
| C14A | 0.4388 (12) | −0.1159 (11) | 0.2417 (7) | 0.071 (3) | 0.77 (2) |
| H14A | 0.5179 | −0.1870 | 0.2633 | 0.107* | 0.77 (2) |
| C15A | 0.2833 (14) | −0.0828 (10) | 0.2790 (5) | 0.068 (2) | 0.77 (2) |
| H15A | 0.2613 | −0.1279 | 0.3270 | 0.102* | 0.77 (2) |
| C11B | 0.240 (5) | 0.060 (6) | 0.179 (2) | 0.069 (11) | 0.23 (2) |
| H11B | 0.1873 | 0.1316 | 0.1463 | 0.103* | 0.23 (2) |
| C12B | 0.403 (3) | −0.004 (4) | 0.1598 (16) | 0.052 (8) | 0.23 (2) |
| H12B | 0.4608 | 0.0185 | 0.1134 | 0.077* | 0.23 (2) |
| C13B | 0.475 (3) | −0.104 (4) | 0.214 (2) | 0.074 (12) | 0.23 (2) |
| H13B | 0.5909 | −0.1414 | 0.2053 | 0.112* | 0.23 (2) |
| C14B | 0.391 (3) | −0.154 (3) | 0.280 (2) | 0.072 (7) | 0.23 (2) |
| H14B | 0.4437 | −0.2272 | 0.3126 | 0.108* | 0.23 (2) |
| C15B | 0.225 (3) | −0.093 (3) | 0.2963 (16) | 0.053 (6) | 0.23 (2) |
| H15B | 0.1608 | −0.1244 | 0.3395 | 0.079* | 0.23 (2) |
| S6 | 0.0669 (5) | 0.0494 (4) | 0.0553 (4) | −0.0142 (4) | 0.0264 (3) | −0.0107 (4) |
| N1 | 0.0485 (13) | 0.0404 (12) | 0.0538 (13) | −0.0110 (11) | 0.0150 (10) | −0.0100 (11) |
| N2 | 0.0480 (13) | 0.0527 (13) | 0.0577 (15) | −0.0092 (11) | 0.0180 (11) | −0.0129 (12) |
| N4 | 0.0407 (11) | 0.0443 (12) | 0.0491 (12) | −0.0089 (10) | 0.0113 (9) | −0.0094 (11) |
| C3 | 0.0438 (14) | 0.0560 (16) | 0.0558 (16) | −0.0092 (14) | 0.0160 (12) | −0.0166 (14) |
| C5 | 0.0429 (14) | 0.0345 (12) | 0.0465 (15) | −0.0038 (11) | 0.0069 (11) | 0.0005 (11) |
| C7 | 0.0447 (15) | 0.0585 (18) | 0.0665 (19) | −0.0148 (14) | 0.0138 (13) | −0.0140 (15) |
| C8 | 0.080 (2) | 0.0522 (18) | 0.102 (3) | −0.0176 (17) | 0.031 (2) | −0.0055 (18) |
| C9 | 0.0629 (19) | 0.101 (3) | 0.089 (2) | −0.0244 (19) | 0.0288 (17) | −0.054 (2) |
| C10 | 0.0451 (15) | 0.0458 (15) | 0.0465 (15) | −0.0063 (12) | 0.0078 (12) | −0.0113 (13) |
| C11A | 0.052 (4) | 0.043 (4) | 0.055 (4) | 0.004 (3) | 0.006 (3) | −0.004 (2) |
| C12A | 0.062 (5) | 0.063 (5) | 0.062 (4) | 0.001 (3) | 0.024 (3) | −0.004 (3) |
| C13A | 0.043 (4) | 0.077 (5) | 0.080 (5) | 0.008 (3) | 0.014 (4) | −0.027 (4) |
| C14A | 0.063 (6) | 0.063 (5) | 0.087 (8) | 0.018 (4) | −0.015 (5) | 0.002 (4) |
| C15A | 0.091 (6) | 0.063 (4) | 0.050 (4) | −0.020 (5) | −0.003 (4) | 0.007 (3) |
| C11B | 0.054 (19) | 0.06 (2) | 0.09 (2) | 0.006 (12) | −0.022 (13) | −0.003 (13) |
| C12B | 0.032 (14) | 0.07 (2) | 0.052 (16) | −0.003 (12) | 0.015 (12) | −0.019 (14) |
| C13B | 0.051 (12) | 0.10 (2) | 0.07 (2) | −0.041 (13) | 0.029 (13) | −0.041 (18) |
| C14B | 0.074 (15) | 0.049 (11) | 0.094 (19) | 0.016 (10) | −0.004 (13) | 0.003 (11) |
| C15B | 0.033 (10) | 0.059 (12) | 0.067 (15) | 0.008 (9) | 0.003 (7) | 0.008 (8) |
| S6—C5 | 1.673 (3) | C10—C11B | 1.379 (5) |
| N1—C5 | 1.335 (3) | C10—C15A | 1.394 (7) |
| N1—N2 | 1.371 (3) | C11A—C12A | 1.376 (9) |
| N1—H1 | 0.86 (3) | C11A—H11A | 0.9300 |
| N2—C3 | 1.288 (3) | C12A—C13A | 1.381 (10) |
| N4—C5 | 1.365 (3) | C12A—H12A | 0.9300 |
| N4—C3 | 1.370 (3) | C13A—C14A | 1.360 (11) |
| N4—C7 | 1.457 (3) | C13A—H13A | 0.9300 |
| C3—C9 | 1.498 (4) | C14A—C15A | 1.361 (9) |
| C7—C8 | 1.502 (4) | C14A—H14A | 0.9300 |
| C7—H7A | 0.9700 | C15A—H15A | 0.9300 |
| C7—H7B | 0.9700 | C11B—C12B | 1.380 (5) |
| C8—H8A | 0.9600 | C11B—H11B | 0.9300 |
| C8—H8B | 0.9600 | C12B—C13B | 1.379 (5) |
| C8—H8C | 0.9600 | C12B—H12B | 0.9300 |
| C9—C10 | 1.504 (4) | C13B—C14B | 1.377 (5) |
| C9—H91 | 0.9700 | C13B—H13B | 0.9300 |
| C9—H92 | 0.9700 | C14B—C15B | 1.379 (5) |
| C10—C11A | 1.369 (6) | C14B—H14B | 0.9300 |
| C10—C15B | 1.379 (5) | C15B—H15B | 0.9300 |
| C5—N1—N2 | 113.6 (2) | C15B—C10—C9 | 103.9 (10) |
| C5—N1—H1 | 123 (2) | C11B—C10—C9 | 133.0 (12) |
| N2—N1—H1 | 123 (2) | C15A—C10—C9 | 126.1 (5) |
| C3—N2—N1 | 103.7 (2) | C10—C11A—C12A | 121.7 (8) |
| C5—N4—C3 | 107.9 (2) | C10—C11A—H11A | 119.2 |
| C5—N4—C7 | 124.2 (2) | C12A—C11A—H11A | 119.2 |
| C3—N4—C7 | 127.9 (2) | C11A—C12A—C13A | 120.5 (9) |
| N2—C3—N4 | 111.5 (2) | C11A—C12A—H12A | 119.8 |
| N2—C3—C9 | 126.0 (2) | C13A—C12A—H12A | 119.8 |
| N4—C3—C9 | 122.4 (2) | C14A—C13A—C12A | 118.3 (8) |
| N1—C5—N4 | 103.2 (2) | C14A—C13A—H13A | 120.8 |
| N1—C5—S6 | 129.3 (2) | C12A—C13A—H13A | 120.8 |
| N4—C5—S6 | 127.47 (18) | C13A—C14A—C15A | 121.1 (7) |
| N4—C7—C8 | 111.6 (2) | C13A—C14A—H14A | 119.4 |
| N4—C7—H7A | 109.3 | C15A—C14A—H14A | 119.4 |
| C8—C7—H7A | 109.3 | C14A—C15A—C10 | 121.6 (5) |
| N4—C7—H7B | 109.3 | C14A—C15A—H15A | 119.2 |
| C8—C7—H7B | 109.3 | C10—C15A—H15A | 119.2 |
| H7A—C7—H7B | 108.0 | C10—C11B—C12B | 120.3 (17) |
| C7—C8—H8A | 109.5 | C10—C11B—H11B | 119.8 |
| C7—C8—H8B | 109.5 | C12B—C11B—H11B | 119.8 |
| H8A—C8—H8B | 109.5 | C13B—C12B—C11B | 115 (2) |
| C7—C8—H8C | 109.5 | C13B—C12B—H12B | 122.3 |
| H8A—C8—H8C | 109.5 | C11B—C12B—H12B | 122.3 |
| H8B—C8—H8C | 109.5 | C14B—C13B—C12B | 126 (2) |
| C3—C9—C10 | 114.1 (3) | C14B—C13B—H13B | 117.2 |
| C3—C9—H91 | 108.7 | C12B—C13B—H13B | 117.2 |
| C10—C9—H91 | 108.7 | C13B—C14B—C15B | 117 (2) |
| C3—C9—H92 | 108.7 | C13B—C14B—H14B | 121.3 |
| C10—C9—H92 | 108.7 | C15B—C14B—H14B | 121.3 |
| H91—C9—H92 | 107.6 | C14B—C15B—C10 | 118.3 (15) |
| C15B—C10—C11B | 122.5 (12) | C14B—C15B—H15B | 120.8 |
| C11A—C10—C15A | 116.8 (5) | C10—C15B—H15B | 120.8 |
| C11A—C10—C9 | 117.1 (5) | ||
| C5—N1—N2—C3 | −0.1 (3) | C3—C9—C10—C11B | −105 (4) |
| N1—N2—C3—N4 | 0.3 (3) | C3—C9—C10—C15A | 79.6 (7) |
| N1—N2—C3—C9 | 178.3 (3) | C15A—C10—C11A—C12A | 0.7 (18) |
| C5—N4—C3—N2 | −0.3 (3) | C9—C10—C11A—C12A | −177.0 (11) |
| C7—N4—C3—N2 | 179.7 (3) | C10—C11A—C12A—C13A | 0 (2) |
| C5—N4—C3—C9 | −178.5 (3) | C11A—C12A—C13A—C14A | 0.4 (17) |
| C7—N4—C3—C9 | 1.6 (5) | C12A—C13A—C14A—C15A | −2.2 (16) |
| N2—N1—C5—N4 | −0.1 (3) | C13A—C14A—C15A—C10 | 3.3 (16) |
| N2—N1—C5—S6 | 179.3 (2) | C11A—C10—C15A—C14A | −2.5 (14) |
| C3—N4—C5—N1 | 0.2 (3) | C9—C10—C15A—C14A | 175.0 (7) |
| C7—N4—C5—N1 | −179.8 (2) | C15B—C10—C11B—C12B | −2 (7) |
| C3—N4—C5—S6 | −179.2 (2) | C9—C10—C11B—C12B | −173 (3) |
| C7—N4—C5—S6 | 0.8 (4) | C10—C11B—C12B—C13B | −3 (7) |
| C5—N4—C7—C8 | −88.5 (3) | C11B—C12B—C13B—C14B | 7 (5) |
| C3—N4—C7—C8 | 91.4 (3) | C12B—C13B—C14B—C15B | −4 (5) |
| N2—C3—C9—C10 | 25.1 (5) | C13B—C14B—C15B—C10 | −2 (5) |
| N4—C3—C9—C10 | −157.0 (3) | C11B—C10—C15B—C14B | 5 (5) |
| C3—C9—C10—C11A | −102.9 (9) | C9—C10—C15B—C14B | 178 (3) |
| C3—C9—C10—C15B | 83.1 (16) |
| H··· | ||||
| C7—H7 | 0.97 | 2.85 | 3.204 (3) | 103 |
| N1—H1···S6i | 0.86 (3) | 2.46 (3) | 3.303 (3) | 167 (3) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C7—H7 | 0.97 | 2.85 | 3.204 (3) | 103 |
| N1—H1⋯S6i | 0.86 (3) | 2.46 (3) | 3.303 (3) | 167 (3) |
Symmetry code: (i) .