Literature DB >> 23468713

(4,4'-Dimethyl-2,2'-bipyridine-κ(2) N,N')(dimethyl-formamide-κO)diiodido-cadmium.

Sadif A Shirvan1, Sara Haydari Dezfuli, Fereydoon Khazali, Ali Borsalani.   

Abstract

In the title compound, [CdI2(C12n class="Species">H12N2)(C3H7NO)], the Cd(II) cation is five-coordinated in a distorted trigonal-bipyramidal configuration by two N atoms from a 4,4'-dimethyl-2,2'-bipyridine ligand, one O atom from a dimethyl-formamide ligand and two I(-) anions. π-π stacking between pyridine rings of adjacent mol-ecules [centroid-centroid distance = 3.666 (3) and 3.709 (4) Å] stabilizes the three-dimensional structure.

Entities:  

Year:  2012        PMID: 23468713      PMCID: PMC3588748          DOI: 10.1107/S1600536812046648

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Ahmadi et al. (2008 ▶); Alizadeh et al. (2010 ▶); Amani et al. (2009 ▶); Bellusci et al. (2008 ▶); Hojjat Kashani et al. (2008 ▶); Kalateh et al. (2008 ▶, 2010 ▶); Shirvan & Haydari Dezfuli (2012 ▶); Sofetis et al. (2006 ▶); Willett et al. (2001 ▶); Yousefi et al. (2008 ▶).

Experimental

Crystal data

[CdI2(C12n class="Species">H12N2)(C3H7NO)] M = 623.54 Monoclinic, a = 8.6103 (6) Å b = 15.1325 (8) Å c = 15.4263 (10) Å β = 98.347 (5)° V = 1988.7 (2) Å3 Z = 4 Mo Kα radiation μ = 4.21 mm−1 T = 298 K 0.45 × 0.40 × 0.35 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.188, T max = 0.223 12059 measured reflections 3907 independent reflections 2859 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.084 S = 0.98 3907 reflections 199 parameters H-atom parameters constrained Δρmax = 0.85 e Å−3 Δρmin = −1.08 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812046648/xu5650sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812046648/xu5650Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CdI2(C12H12N2)(C3H7NO)]F(000) = 1168
Mr = 623.54Dx = 2.083 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 12059 reflections
a = 8.6103 (6) Åθ = 2.4–26.0°
b = 15.1325 (8) ŵ = 4.21 mm1
c = 15.4263 (10) ÅT = 298 K
β = 98.347 (5)°Prism, colorless
V = 1988.7 (2) Å30.45 × 0.40 × 0.35 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer3907 independent reflections
Radiation source: fine-focus sealed tube2859 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.052
ω scansθmax = 26.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −10→9
Tmin = 0.188, Tmax = 0.223k = −18→17
12059 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.0426P)2] where P = (Fo2 + 2Fc2)/3
3907 reflections(Δ/σ)max = 0.007
199 parametersΔρmax = 0.85 e Å3
0 restraintsΔρmin = −1.08 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8789 (8)−0.0736 (4)0.0980 (3)0.0488 (15)
H10.9275−0.09650.15100.059*
C20.9026 (7)−0.1170 (4)0.0221 (4)0.0477 (15)
H20.9664−0.16680.02420.057*
C30.8286 (7)−0.0843 (4)−0.0571 (3)0.0444 (14)
C40.8494 (9)−0.1285 (5)−0.1415 (4)0.0619 (19)
H4A0.8981−0.0881−0.17740.074*
H4B0.7488−0.1460−0.17190.074*
H4C0.9147−0.1797−0.12950.074*
C50.7387 (7)−0.0090 (4)−0.0555 (3)0.0404 (14)
H50.69010.0149−0.10800.049*
C60.7189 (7)0.0318 (4)0.0225 (3)0.0353 (12)
C70.6243 (6)0.1118 (4)0.0260 (3)0.0346 (12)
C80.5479 (7)0.1536 (4)−0.0481 (3)0.0412 (14)
H80.55600.1305−0.10310.049*
C90.4610 (8)0.2282 (4)−0.0416 (4)0.0500 (16)
C100.3786 (10)0.2740 (5)−0.1238 (4)0.070 (2)
H10A0.30510.2340−0.15590.083*
H10B0.45500.2917−0.16000.083*
H10C0.32380.3252−0.10740.083*
C110.4523 (8)0.2614 (5)0.0406 (4)0.0552 (17)
H110.39360.31180.04770.066*
C120.5324 (8)0.2183 (5)0.1124 (4)0.0546 (17)
H120.52790.24170.16770.066*
C131.0539 (9)−0.0020 (5)0.3557 (4)0.0620 (19)
H131.08290.05700.36350.074*
C141.0840 (14)−0.1519 (7)0.4055 (6)0.116 (4)
H14A1.1070−0.17410.35040.140*
H14B0.9743−0.15970.40870.140*
H14C1.1450−0.18360.45250.140*
C151.2436 (9)−0.0323 (6)0.4837 (4)0.077 (3)
H15A1.20160.01110.51930.092*
H15B1.3308−0.00740.45970.092*
H15C1.2782−0.08280.51880.092*
N10.7921 (6)−0.0018 (3)0.1005 (3)0.0413 (12)
N20.6153 (6)0.1455 (3)0.1065 (3)0.0408 (12)
N31.1228 (6)−0.0590 (4)0.4127 (3)0.0526 (14)
O10.9541 (6)−0.0201 (4)0.2930 (3)0.0708 (15)
Cd10.74180 (5)0.06619 (3)0.22889 (2)0.04265 (13)
I10.51473 (6)−0.03208 (3)0.29304 (2)0.05923 (15)
I20.84760 (6)0.21673 (3)0.32035 (3)0.06213 (16)
U11U22U33U12U13U23
C10.066 (4)0.042 (4)0.035 (3)0.010 (3)−0.003 (3)0.003 (2)
C20.051 (4)0.045 (4)0.047 (3)0.010 (3)0.006 (3)−0.002 (3)
C30.046 (3)0.047 (4)0.041 (3)−0.004 (3)0.008 (2)−0.006 (2)
C40.082 (5)0.059 (5)0.047 (3)0.011 (4)0.016 (3)−0.012 (3)
C50.049 (4)0.046 (4)0.025 (2)0.001 (3)0.004 (2)0.001 (2)
C60.038 (3)0.039 (3)0.028 (2)−0.006 (3)0.001 (2)−0.001 (2)
C70.040 (3)0.034 (3)0.029 (2)−0.002 (3)0.001 (2)0.001 (2)
C80.052 (4)0.043 (4)0.026 (2)0.004 (3)0.000 (2)0.002 (2)
C90.062 (4)0.047 (4)0.038 (3)0.002 (3)−0.003 (3)0.007 (2)
C100.090 (6)0.066 (5)0.050 (3)0.028 (4)0.000 (3)0.015 (3)
C110.063 (4)0.044 (4)0.057 (4)0.015 (3)0.000 (3)−0.001 (3)
C120.069 (5)0.052 (4)0.043 (3)0.008 (4)0.007 (3)−0.009 (3)
C130.063 (5)0.062 (5)0.057 (4)−0.001 (4)−0.004 (3)0.011 (3)
C140.162 (11)0.083 (7)0.085 (6)−0.012 (7)−0.044 (7)0.003 (5)
C150.067 (5)0.115 (7)0.042 (3)−0.008 (5)−0.012 (3)0.009 (4)
N10.048 (3)0.044 (3)0.029 (2)0.001 (2)−0.0041 (19)0.0007 (19)
N20.047 (3)0.044 (3)0.031 (2)0.000 (2)0.0004 (19)−0.0054 (19)
N30.058 (3)0.067 (4)0.029 (2)0.004 (3)−0.003 (2)0.000 (2)
O10.077 (4)0.077 (4)0.048 (2)0.011 (3)−0.025 (2)−0.007 (2)
Cd10.0527 (3)0.0474 (3)0.02556 (18)−0.0051 (2)−0.00212 (15)−0.00121 (16)
I10.0755 (3)0.0669 (3)0.03425 (19)−0.0214 (2)0.00443 (18)0.00662 (17)
I20.0806 (3)0.0571 (3)0.0446 (2)−0.0157 (2)−0.0047 (2)−0.01291 (18)
C1—N11.322 (8)C10—H10C0.9600
C1—C21.383 (8)C11—C121.380 (8)
C1—H10.9300C11—H110.9300
C2—C31.385 (8)C12—N21.323 (8)
C2—H20.9300C12—H120.9300
C3—C51.379 (9)C13—O11.229 (8)
C3—C41.498 (8)C13—N31.310 (8)
C4—H4A0.9600C13—H130.9300
C4—H4B0.9600C14—N31.445 (11)
C4—H4C0.9600C14—H14A0.9600
C5—C61.384 (7)C14—H14B0.9600
C5—H50.9300C14—H14C0.9600
C6—N11.373 (6)C15—N31.454 (8)
C6—C71.464 (8)C15—H15A0.9600
C7—N21.355 (6)C15—H15B0.9600
C7—C81.386 (7)C15—H15C0.9600
C8—C91.367 (9)Cd1—N12.327 (4)
C8—H80.9300Cd1—N22.365 (4)
C9—C111.377 (9)Cd1—O12.345 (5)
C9—C101.527 (8)Cd1—I12.7523 (7)
C10—H10A0.9600Cd1—I22.7635 (6)
C10—H10B0.9600
N1—C1—C2124.6 (5)N2—C12—C11123.4 (5)
N1—C1—H1117.7N2—C12—H12118.3
C2—C1—H1117.7C11—C12—H12118.3
C1—C2—C3118.1 (6)O1—C13—N3125.3 (7)
C1—C2—H2120.9O1—C13—H13117.3
C3—C2—H2120.9N3—C13—H13117.3
C5—C3—C2117.8 (5)N3—C14—H14A109.5
C5—C3—C4121.6 (5)N3—C14—H14B109.5
C2—C3—C4120.6 (6)H14A—C14—H14B109.5
C3—C4—H4A109.5N3—C14—H14C109.5
C3—C4—H4B109.5H14A—C14—H14C109.5
H4A—C4—H4B109.5H14B—C14—H14C109.5
C3—C4—H4C109.5N3—C15—H15A109.5
H4A—C4—H4C109.5N3—C15—H15B109.5
H4B—C4—H4C109.5H15A—C15—H15B109.5
C3—C5—C6121.7 (5)N3—C15—H15C109.5
C3—C5—H5119.2H15A—C15—H15C109.5
C6—C5—H5119.2H15B—C15—H15C109.5
N1—C6—C5119.9 (5)C1—N1—C6117.9 (5)
N1—C6—C7117.4 (4)C1—N1—Cd1124.4 (3)
C5—C6—C7122.7 (5)C6—N1—Cd1117.6 (4)
N2—C7—C8120.0 (5)C12—N2—C7118.7 (5)
N2—C7—C6116.8 (4)C12—N2—Cd1123.9 (4)
C8—C7—C6123.1 (5)C7—N2—Cd1117.4 (4)
C9—C8—C7121.1 (5)C13—N3—C14120.8 (6)
C9—C8—H8119.5C13—N3—C15121.7 (7)
C7—C8—H8119.5C14—N3—C15117.4 (6)
C8—C9—C11118.2 (5)C13—O1—Cd1128.4 (5)
C8—C9—C10120.5 (5)N1—Cd1—O183.23 (16)
C11—C9—C10121.3 (6)N1—Cd1—N270.51 (16)
C9—C10—H10A109.5O1—Cd1—N2149.27 (18)
C9—C10—H10B109.5N1—Cd1—I1107.25 (13)
H10A—C10—H10B109.5O1—Cd1—I195.65 (14)
C9—C10—H10C109.5N2—Cd1—I1106.98 (12)
H10A—C10—H10C109.5N1—Cd1—I2135.29 (13)
H10B—C10—H10C109.5O1—Cd1—I293.72 (12)
C9—C11—C12118.7 (6)N2—Cd1—I293.95 (12)
C9—C11—H11120.7I1—Cd1—I2117.42 (2)
C12—C11—H11120.7
N1—C1—C2—C3−1.1 (11)C6—C7—N2—C12179.2 (6)
C1—C2—C3—C51.5 (9)C8—C7—N2—Cd1177.8 (4)
C1—C2—C3—C4−179.9 (6)C6—C7—N2—Cd1−3.2 (6)
C2—C3—C5—C6−1.6 (9)O1—C13—N3—C14−0.2 (13)
C4—C3—C5—C6179.8 (6)O1—C13—N3—C15178.0 (7)
C3—C5—C6—N11.1 (9)N3—C13—O1—Cd1147.5 (6)
C3—C5—C6—C7179.9 (6)C1—N1—Cd1—O116.0 (5)
N1—C6—C7—N2−0.8 (8)C6—N1—Cd1—O1−168.1 (4)
C5—C6—C7—N2−179.6 (5)C1—N1—Cd1—N2179.8 (6)
N1—C6—C7—C8178.2 (5)C6—N1—Cd1—N2−4.4 (4)
C5—C6—C7—C8−0.6 (9)C1—N1—Cd1—I1−77.8 (5)
N2—C7—C8—C9−0.9 (9)C6—N1—Cd1—I198.0 (4)
C6—C7—C8—C9−179.9 (6)C1—N1—Cd1—I2104.5 (5)
C7—C8—C9—C110.6 (10)C6—N1—Cd1—I2−79.7 (4)
C7—C8—C9—C10179.5 (6)C13—O1—Cd1—N1146.2 (7)
C8—C9—C11—C120.5 (11)C13—O1—Cd1—N2115.2 (6)
C10—C9—C11—C12−178.4 (7)C13—O1—Cd1—I1−107.0 (6)
C9—C11—C12—N2−1.3 (11)C13—O1—Cd1—I211.0 (6)
C2—C1—N1—C60.6 (10)C12—N2—Cd1—N1−178.6 (6)
C2—C1—N1—Cd1176.4 (5)C7—N2—Cd1—N14.0 (4)
C5—C6—N1—C1−0.6 (8)C12—N2—Cd1—O1−145.7 (5)
C7—C6—N1—C1−179.4 (6)C7—N2—Cd1—O136.9 (6)
C5—C6—N1—Cd1−176.7 (4)C12—N2—Cd1—I178.7 (5)
C7—C6—N1—Cd14.5 (6)C7—N2—Cd1—I1−98.8 (4)
C11—C12—N2—C70.9 (10)C12—N2—Cd1—I2−41.6 (5)
C11—C12—N2—Cd1−176.5 (5)C7—N2—Cd1—I2140.9 (4)
C8—C7—N2—C120.2 (9)
Table 1

Selected bond lengths (Å)

Cd1—N12.327 (4)
Cd1—N22.365 (4)
Cd1—O12.345 (5)
Cd1—I12.7523 (7)
Cd1—I22.7635 (6)
  9 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Crystal chemistry of the 4,4'-dimethyl-2,2'bipyridine/copper bromide system.

Authors:  R D Willett; G Pon; C Nagy
Journal:  Inorg Chem       Date:  2001-08-13       Impact factor: 5.165

3.  Tetra-chlorido(4,4'-dimethyl-2,2'-bipyridine-κN,N')platinum(IV).

Authors:  Leila Hojjat Kashani; Vahid Amani; Mohammad Yousefi; Hamid Reza Khavasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-13

4.  (4,4'-Dimethyl-2,2'-bipyridine-κN,N')(dimethyl sulfoxide-κO)diiodidocadmium(II).

Authors:  Khadijeh Kalateh; Roya Ahmadi; Vahid Amani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-10

5.  Di-μ-bromido-bis-[bromido(4,4'-dimethyl-2,2'-bipyridine-κN,N')mercury(II)].

Authors:  Khadijeh Kalateh; Amin Ebadi; Roya Ahmadi; Vahid Amani; Hamid Reza Khavasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-15

6.  Trichlorido(4,4'-dimethyl-2,2'-bipyridine-κN,N')(dimethyl sulfoxide-κO)indium(III).

Authors:  Roya Ahmadi; Khadijeh Kalateh; Anita Abedi; Vahid Amani; Hamid Reza Khavasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-20

7.  (4,4'-Dimethyl-2,2'-bipyridine-κN,N')diiodidomercury(II).

Authors:  Mohammad Yousefi; Nasim Tadayon Pour; Vahid Amani; Hamid Reza Khavasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-13

8.  Dibromido(4,4'-dimethyl-2,2'-bipyridine-κN,N')zinc(II).

Authors:  Robabeh Alizadeh; Parisa Mohammadi Eshlaghi; Vahid Amani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-24

9.  Dibromido(4,4'-dimethyl-2,2'-bipyridine-κ(2)N,N')(dimethyl sulfoxide-κO)cadmium.

Authors:  Sadif A Shirvan; Sara Haydari Dezfuli
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30
  9 in total

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