| Literature DB >> 23468683 |
Sergey Malinkin1, Vadim A Pavlenko, Elzbieta Gumienna-Kontecka, Elena V Prisyazhnaya, Turganbay S Iskenderov.
Abstract
In the title compound, [Cu(C7H6N2O3)(C6H8N2)(H2O)], the Cu(II) ion is in a distorted square-pyramidal N3O2 environment formed by two bidentate chelating ligands in the equatorial coordination sites and one water mol-ecule in the apical direction. In the crystal, O-H⋯O, N-H⋯O and O-H⋯N hydrogen bonds link the complex mol-ecules into a three-dimensional supra-molecular network.Entities:
Year: 2012 PMID: 23468683 PMCID: PMC3588718 DOI: 10.1107/S1600536812044959
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C7H6N2O3)(C6H8N2)(H2O)] | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 2567 reflections | |
| θ = 3.0–28.5° | |
| µ = 1.55 mm−1 | |
| α = 90.695 (6)° | |
| β = 105.935 (4)° | Block, blue |
| γ = 110.232 (4)° | 0.36 × 0.23 × 0.13 mm |
| Nonius KappaCCD diffractometer | 5715 independent reflections |
| Radiation source: fine-focus sealed tube | 4833 reflections with |
| Horizontally mounted graphite crystal monochromator | |
| Detector resolution: 9 pixels mm-1 | θmax = 35.1°, θmin = 2.9° |
| φ scans and ω scans with κ offset | |
| Absorption correction: multi-scan ( | |
| 13527 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 5715 reflections | (Δ/σ)max = 0.004 |
| 217 parameters | Δρmax = 0.72 e Å−3 |
| 0 restraints | Δρmin = −0.32 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cu1 | 0.545220 (19) | 0.299111 (15) | 0.020497 (9) | 0.01226 (4) | |
| O1 | 0.74298 (12) | 0.49534 (9) | −0.02392 (6) | 0.01456 (14) | |
| O2 | 0.85228 (12) | 0.57781 (10) | −0.16483 (6) | 0.01670 (15) | |
| O3 | 0.22559 (13) | −0.03669 (11) | −0.47062 (6) | 0.01945 (16) | |
| O4 | 0.79221 (13) | 0.17036 (10) | 0.06402 (6) | 0.01427 (14) | |
| N1 | 0.45340 (14) | 0.21529 (11) | −0.13062 (7) | 0.01267 (15) | |
| N2 | 0.30428 (14) | 0.08145 (11) | −0.19556 (7) | 0.01319 (16) | |
| N3 | 0.63606 (14) | 0.39053 (11) | 0.17463 (7) | 0.01323 (15) | |
| N4 | 0.29685 (15) | 0.14866 (12) | 0.05729 (7) | 0.01486 (16) | |
| C1 | 0.73803 (15) | 0.47312 (13) | −0.12234 (8) | 0.01244 (17) | |
| C2 | 0.57544 (15) | 0.31343 (12) | −0.18524 (8) | 0.01178 (17) | |
| C3 | 0.50547 (16) | 0.24117 (13) | −0.29113 (8) | 0.01245 (17) | |
| C4 | 0.33336 (16) | 0.09471 (13) | −0.29373 (8) | 0.01263 (17) | |
| C5 | 0.19154 (17) | −0.03454 (13) | −0.38437 (8) | 0.01427 (18) | |
| C6 | 0.00133 (18) | −0.16234 (15) | −0.36737 (9) | 0.0198 (2) | |
| H6A | −0.0784 | −0.2390 | −0.4318 | 0.030* | |
| H6B | −0.0776 | −0.1019 | −0.3486 | 0.030* | |
| H6C | 0.0386 | −0.2276 | −0.3108 | 0.030* | |
| C7 | 0.58880 (17) | 0.30559 (15) | −0.38093 (9) | 0.0172 (2) | |
| H7A | 0.7016 | 0.4131 | −0.3560 | 0.026* | |
| H7B | 0.4839 | 0.3224 | −0.4374 | 0.026* | |
| H7C | 0.6345 | 0.2227 | −0.4070 | 0.026* | |
| C8 | 0.79957 (17) | 0.53218 (14) | 0.22340 (9) | 0.01563 (18) | |
| H8 | 0.8738 | 0.6015 | 0.1826 | 0.019* | |
| C9 | 0.86018 (18) | 0.57730 (15) | 0.33271 (9) | 0.0189 (2) | |
| H9 | 0.9714 | 0.6771 | 0.3649 | 0.023* | |
| C10 | 0.75138 (19) | 0.47038 (16) | 0.39326 (9) | 0.0204 (2) | |
| H10 | 0.7917 | 0.4959 | 0.4670 | 0.024* | |
| C11 | 0.58221 (19) | 0.32535 (15) | 0.34283 (9) | 0.0187 (2) | |
| H11 | 0.5067 | 0.2531 | 0.3821 | 0.022* | |
| C12 | 0.52770 (17) | 0.28997 (14) | 0.23287 (8) | 0.01449 (18) | |
| C13 | 0.34690 (17) | 0.13433 (14) | 0.17266 (9) | 0.01577 (19) | |
| H13A | 0.3780 | 0.0310 | 0.1864 | 0.019* | |
| H13B | 0.2302 | 0.1252 | 0.1970 | 0.019* | |
| H1N4 | 0.236 (3) | 0.048 (2) | 0.0232 (14) | 0.025 (4)* | |
| H2O4 | 0.773 (3) | 0.114 (2) | 0.1040 (14) | 0.024 (4)* | |
| H2N4 | 0.207 (3) | 0.194 (3) | 0.0389 (16) | 0.040 (5)* | |
| H1O4 | 0.895 (3) | 0.247 (3) | 0.0914 (17) | 0.041 (5)* |
| Cu1 | 0.01549 (7) | 0.00997 (6) | 0.00858 (6) | 0.00179 (4) | 0.00302 (4) | −0.00059 (4) |
| O1 | 0.0177 (4) | 0.0105 (3) | 0.0116 (3) | 0.0019 (3) | 0.0025 (3) | 0.0001 (2) |
| O2 | 0.0156 (4) | 0.0145 (3) | 0.0161 (4) | 0.0008 (3) | 0.0045 (3) | 0.0034 (3) |
| O3 | 0.0233 (4) | 0.0230 (4) | 0.0110 (3) | 0.0081 (3) | 0.0041 (3) | −0.0014 (3) |
| O4 | 0.0171 (4) | 0.0098 (3) | 0.0128 (3) | 0.0018 (3) | 0.0037 (3) | 0.0014 (2) |
| N1 | 0.0140 (4) | 0.0102 (4) | 0.0107 (4) | 0.0014 (3) | 0.0029 (3) | 0.0003 (3) |
| N2 | 0.0157 (4) | 0.0109 (4) | 0.0094 (4) | 0.0016 (3) | 0.0023 (3) | −0.0001 (3) |
| N3 | 0.0147 (4) | 0.0134 (4) | 0.0118 (4) | 0.0059 (3) | 0.0033 (3) | −0.0005 (3) |
| N4 | 0.0167 (4) | 0.0139 (4) | 0.0116 (4) | 0.0033 (3) | 0.0037 (3) | −0.0019 (3) |
| C1 | 0.0123 (4) | 0.0106 (4) | 0.0132 (4) | 0.0039 (3) | 0.0022 (3) | 0.0015 (3) |
| C2 | 0.0128 (4) | 0.0099 (4) | 0.0110 (4) | 0.0026 (3) | 0.0030 (3) | 0.0010 (3) |
| C3 | 0.0137 (4) | 0.0133 (4) | 0.0102 (4) | 0.0047 (3) | 0.0037 (3) | 0.0015 (3) |
| C4 | 0.0155 (4) | 0.0120 (4) | 0.0097 (4) | 0.0041 (3) | 0.0036 (3) | 0.0014 (3) |
| C5 | 0.0168 (5) | 0.0124 (4) | 0.0122 (4) | 0.0055 (3) | 0.0019 (4) | −0.0002 (3) |
| C6 | 0.0207 (5) | 0.0167 (5) | 0.0146 (5) | 0.0008 (4) | 0.0015 (4) | −0.0017 (3) |
| C7 | 0.0186 (5) | 0.0204 (5) | 0.0125 (4) | 0.0050 (4) | 0.0070 (4) | 0.0023 (3) |
| C8 | 0.0142 (4) | 0.0163 (5) | 0.0149 (5) | 0.0055 (4) | 0.0021 (4) | −0.0029 (3) |
| C9 | 0.0171 (5) | 0.0204 (5) | 0.0164 (5) | 0.0074 (4) | 0.0001 (4) | −0.0055 (4) |
| C10 | 0.0227 (5) | 0.0260 (6) | 0.0117 (5) | 0.0112 (4) | 0.0012 (4) | −0.0034 (4) |
| C11 | 0.0230 (5) | 0.0229 (5) | 0.0117 (5) | 0.0097 (4) | 0.0057 (4) | 0.0009 (4) |
| C12 | 0.0182 (5) | 0.0156 (4) | 0.0119 (4) | 0.0087 (4) | 0.0047 (4) | 0.0005 (3) |
| C13 | 0.0191 (5) | 0.0152 (4) | 0.0133 (4) | 0.0055 (4) | 0.0062 (4) | 0.0017 (3) |
| Cu1—N1 | 1.9451 (9) | C3—C7 | 1.4937 (15) |
| Cu1—N3 | 1.9973 (9) | C4—C5 | 1.4724 (15) |
| Cu1—N4 | 2.0048 (10) | C5—C6 | 1.5055 (16) |
| Cu1—O1 | 1.9874 (8) | C6—H6A | 0.9600 |
| Cu1—O4 | 2.3492 (8) | C6—H6B | 0.9600 |
| O1—C1 | 1.2917 (13) | C6—H6C | 0.9600 |
| O2—C1 | 1.2376 (13) | C7—H7A | 0.9600 |
| O3—C5 | 1.2252 (13) | C7—H7B | 0.9600 |
| O4—H2O4 | 0.717 (18) | C7—H7C | 0.9600 |
| O4—H1O4 | 0.78 (2) | C8—C9 | 1.3852 (15) |
| N1—N2 | 1.3351 (12) | C8—H8 | 0.9300 |
| N1—C2 | 1.3558 (13) | C9—C10 | 1.3895 (18) |
| N2—C4 | 1.3622 (13) | C9—H9 | 0.9300 |
| N3—C12 | 1.3422 (14) | C10—C11 | 1.3868 (17) |
| N3—C8 | 1.3473 (14) | C10—H10 | 0.9300 |
| N4—C13 | 1.4736 (14) | C11—C12 | 1.3862 (15) |
| N4—H1N4 | 0.849 (17) | C11—H11 | 0.9300 |
| N4—H2N4 | 0.84 (2) | C12—C13 | 1.5056 (15) |
| C1—C2 | 1.4842 (14) | C13—H13A | 0.9700 |
| C2—C3 | 1.3899 (14) | C13—H13B | 0.9700 |
| C3—C4 | 1.4087 (14) | ||
| N1—Cu1—O1 | 82.74 (3) | C3—C4—C5 | 129.26 (9) |
| N1—Cu1—N3 | 178.33 (4) | O3—C5—C4 | 121.35 (10) |
| O1—Cu1—N3 | 96.71 (3) | O3—C5—C6 | 121.30 (10) |
| N1—Cu1—N4 | 97.67 (4) | C4—C5—C6 | 117.34 (9) |
| O1—Cu1—N4 | 162.48 (4) | C5—C6—H6A | 109.5 |
| N3—Cu1—N4 | 82.38 (4) | C5—C6—H6B | 109.5 |
| N1—Cu1—O4 | 94.29 (3) | H6A—C6—H6B | 109.5 |
| O1—Cu1—O4 | 88.99 (3) | C5—C6—H6C | 109.5 |
| N3—Cu1—O4 | 87.27 (3) | H6A—C6—H6C | 109.5 |
| N4—Cu1—O4 | 108.40 (4) | H6B—C6—H6C | 109.5 |
| C1—O1—Cu1 | 113.96 (6) | C3—C7—H7A | 109.5 |
| Cu1—O4—H2O4 | 109.7 (14) | C3—C7—H7B | 109.5 |
| Cu1—O4—H1O4 | 104.8 (15) | H7A—C7—H7B | 109.5 |
| H2O4—O4—H1O4 | 106 (2) | C3—C7—H7C | 109.5 |
| N2—N1—C2 | 110.24 (8) | H7A—C7—H7C | 109.5 |
| N2—N1—Cu1 | 136.81 (7) | H7B—C7—H7C | 109.5 |
| C2—N1—Cu1 | 112.89 (7) | N3—C8—C9 | 121.77 (11) |
| N1—N2—C4 | 106.46 (8) | N3—C8—H8 | 119.1 |
| C12—N3—C8 | 119.53 (9) | C9—C8—H8 | 119.1 |
| C12—N3—Cu1 | 114.19 (7) | C8—C9—C10 | 118.62 (11) |
| C8—N3—Cu1 | 126.10 (8) | C8—C9—H9 | 120.7 |
| C13—N4—Cu1 | 110.41 (7) | C10—C9—H9 | 120.7 |
| C13—N4—H1N4 | 109.1 (12) | C9—C10—C11 | 119.49 (10) |
| Cu1—N4—H1N4 | 116.1 (11) | C9—C10—H10 | 120.3 |
| C13—N4—H2N4 | 110.5 (13) | C11—C10—H10 | 120.3 |
| Cu1—N4—H2N4 | 107.6 (13) | C12—C11—C10 | 118.78 (11) |
| H1N4—N4—H2N4 | 102.8 (17) | C12—C11—H11 | 120.6 |
| O2—C1—O1 | 124.10 (9) | C10—C11—H11 | 120.6 |
| O2—C1—C2 | 120.82 (9) | N3—C12—C11 | 121.76 (10) |
| O1—C1—C2 | 115.01 (9) | N3—C12—C13 | 116.41 (9) |
| N1—C2—C3 | 109.44 (9) | C11—C12—C13 | 121.81 (10) |
| N1—C2—C1 | 114.77 (8) | N4—C13—C12 | 110.16 (9) |
| C3—C2—C1 | 135.63 (9) | N4—C13—H13A | 109.6 |
| C2—C3—C4 | 103.02 (9) | C12—C13—H13A | 109.6 |
| C2—C3—C7 | 128.53 (10) | N4—C13—H13B | 109.6 |
| C4—C3—C7 | 128.43 (9) | C12—C13—H13B | 109.6 |
| N2—C4—C3 | 110.82 (9) | H13A—C13—H13B | 108.1 |
| N2—C4—C5 | 119.92 (9) | ||
| N1—Cu1—O1—C1 | −6.64 (7) | O2—C1—C2—N1 | −176.16 (10) |
| N3—Cu1—O1—C1 | 174.95 (7) | O1—C1—C2—N1 | 1.03 (13) |
| N4—Cu1—O1—C1 | −99.11 (13) | O2—C1—C2—C3 | −1.25 (19) |
| O4—Cu1—O1—C1 | 87.82 (7) | O1—C1—C2—C3 | 175.94 (11) |
| O1—Cu1—N1—N2 | −176.05 (11) | N1—C2—C3—C4 | 0.34 (11) |
| N3—Cu1—N1—N2 | −105.3 (12) | C1—C2—C3—C4 | −174.76 (11) |
| N4—Cu1—N1—N2 | −13.71 (11) | N1—C2—C3—C7 | 178.83 (10) |
| O4—Cu1—N1—N2 | 95.53 (11) | C1—C2—C3—C7 | 3.7 (2) |
| O1—Cu1—N1—C2 | 7.03 (7) | N1—N2—C4—C3 | −0.11 (12) |
| N3—Cu1—N1—C2 | 77.8 (12) | N1—N2—C4—C5 | −179.58 (9) |
| N4—Cu1—N1—C2 | 169.36 (7) | C2—C3—C4—N2 | −0.14 (12) |
| O4—Cu1—N1—C2 | −81.40 (7) | C7—C3—C4—N2 | −178.64 (10) |
| C2—N1—N2—C4 | 0.33 (12) | C2—C3—C4—C5 | 179.26 (10) |
| Cu1—N1—N2—C4 | −176.65 (8) | C7—C3—C4—C5 | 0.77 (19) |
| N1—Cu1—N3—C12 | 107.5 (12) | N2—C4—C5—O3 | −172.17 (10) |
| O1—Cu1—N3—C12 | 178.03 (7) | C3—C4—C5—O3 | 8.47 (18) |
| N4—Cu1—N3—C12 | 15.67 (8) | N2—C4—C5—C6 | 8.75 (15) |
| O4—Cu1—N3—C12 | −93.31 (8) | C3—C4—C5—C6 | −170.61 (11) |
| N1—Cu1—N3—C8 | −77.6 (12) | C12—N3—C8—C9 | 0.21 (16) |
| O1—Cu1—N3—C8 | −7.01 (9) | Cu1—N3—C8—C9 | −174.50 (8) |
| N4—Cu1—N3—C8 | −169.37 (9) | N3—C8—C9—C10 | 1.62 (17) |
| O4—Cu1—N3—C8 | 81.65 (9) | C8—C9—C10—C11 | −2.07 (18) |
| N1—Cu1—N4—C13 | 158.90 (7) | C9—C10—C11—C12 | 0.76 (18) |
| O1—Cu1—N4—C13 | −110.94 (12) | C8—N3—C12—C11 | −1.61 (16) |
| N3—Cu1—N4—C13 | −22.79 (7) | Cu1—N3—C12—C11 | 173.71 (8) |
| O4—Cu1—N4—C13 | 61.76 (8) | C8—N3—C12—C13 | 179.85 (9) |
| Cu1—O1—C1—O2 | −178.07 (8) | Cu1—N3—C12—C13 | −4.84 (12) |
| Cu1—O1—C1—C2 | 4.84 (11) | C10—C11—C12—N3 | 1.12 (17) |
| N2—N1—C2—C3 | −0.44 (12) | C10—C11—C12—C13 | 179.58 (10) |
| Cu1—N1—C2—C3 | 177.32 (7) | Cu1—N4—C13—C12 | 25.68 (10) |
| N2—N1—C2—C1 | 175.79 (8) | N3—C12—C13—N4 | −14.04 (13) |
| Cu1—N1—C2—C1 | −6.45 (11) | C11—C12—C13—N4 | 167.42 (10) |
| H··· | ||||
| O4—H1 | 0.78 (2) | 1.90 (2) | 2.6782 (11) | 176 (2) |
| O4—H2 | 0.717 (18) | 2.049 (18) | 2.7581 (12) | 169.7 (19) |
| N4—H1 | 0.849 (17) | 2.055 (17) | 2.8542 (12) | 156.6 (16) |
| N4—H2 | 0.84 (2) | 2.50 (2) | 3.1017 (13) | 128.6 (16) |
Selected bond lengths (Å)
| Cu1—N1 | 1.9451 (9) |
| Cu1—N3 | 1.9973 (9) |
| Cu1—N4 | 2.0048 (10) |
| Cu1—O1 | 1.9874 (8) |
| Cu1—O4 | 2.3492 (8) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O4—H1 | 0.78 (2) | 1.90 (2) | 2.6782 (11) | 176 (2) |
| O4—H2 | 0.717 (18) | 2.049 (18) | 2.7581 (12) | 169.7 (19) |
| N4—H1 | 0.849 (17) | 2.055 (17) | 2.8542 (12) | 156.6 (16) |
| N4—H2 | 0.84 (2) | 2.50 (2) | 3.1017 (13) | 128.6 (16) |
Symmetry codes: (i) ; (ii) ; (iii) .