Literature DB >> 23468683

(3-Acetyl-5-carboxyl-ato-4-methyl-1H-pyrazol-1-ido-κ(2) N (1),O (5))aqua-[(pyridin-2-yl)methanamine-κ(2) N,N']copper(II).

Sergey Malinkin1, Vadim A Pavlenko, Elzbieta Gumienna-Kontecka, Elena V Prisyazhnaya, Turganbay S Iskenderov.   

Abstract

In the title compound, [Cu(C7H6N2O3)(C6H8N2)(H2O)], the Cu(II) ion is in a distorted square-pyramidal N3O2 environment formed by two bidentate chelating ligands in the equatorial coordination sites and one water mol-ecule in the apical direction. In the crystal, O-H⋯O, N-H⋯O and O-H⋯N hydrogen bonds link the complex mol-ecules into a three-dimensional supra-molecular network.

Entities:  

Year:  2012        PMID: 23468683      PMCID: PMC3588718          DOI: 10.1107/S1600536812044959

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of related pyrazoles, see: Sachse et al. (2008 ▶); Penkova et al. (2009 ▶). For synthetic and structural studies of 3,5-disubstituted 1H-pyrazoles and their metal complexes, see: Malinkin et al. (2011 ▶, 2012 ▶). For related structures, see: Fritsky et al. (2004 ▶); Kanderal et al. (2005 ▶); Krämer & Fritsky (2000 ▶); Moroz et al. (2010 ▶); Sliva et al. (1997 ▶); Wörl et al. (2005a ▶,b ▶).

Experimental

Crystal data

[Cu(C7H6N2O3)(C6H8N2)(H2O)] M = 355.84 Triclinic, a = 7.3063 (2) Å b = 8.3258 (5) Å c = 13.1260 (7) Å α = 90.695 (6)° β = 105.935 (4)° γ = 110.232 (4)° V = 715.32 (6) Å3 Z = 2 Mo Kα radiation μ = 1.55 mm−1 T = 120 K 0.36 × 0.23 × 0.13 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.955, T max = 0.987 13527 measured reflections 5715 independent reflections 4833 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.074 S = 1.07 5715 reflections 217 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.72 e Å−3 Δρmin = −0.32 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2009 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812044959/xu5636sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812044959/xu5636Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C7H6N2O3)(C6H8N2)(H2O)]Z = 2
Mr = 355.84F(000) = 366
Triclinic, P1Dx = 1.652 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3063 (2) ÅCell parameters from 2567 reflections
b = 8.3258 (5) Åθ = 3.0–28.5°
c = 13.1260 (7) ŵ = 1.55 mm1
α = 90.695 (6)°T = 120 K
β = 105.935 (4)°Block, blue
γ = 110.232 (4)°0.36 × 0.23 × 0.13 mm
V = 715.32 (6) Å3
Nonius KappaCCD diffractometer5715 independent reflections
Radiation source: fine-focus sealed tube4833 reflections with I > 2σ(I)
Horizontally mounted graphite crystal monochromatorRint = 0.016
Detector resolution: 9 pixels mm-1θmax = 35.1°, θmin = 2.9°
φ scans and ω scans with κ offseth = −11→9
Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997)k = −13→13
Tmin = 0.955, Tmax = 0.987l = −20→21
13527 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.074H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0477P)2] where P = (Fo2 + 2Fc2)/3
5715 reflections(Δ/σ)max = 0.004
217 parametersΔρmax = 0.72 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.545220 (19)0.299111 (15)0.020497 (9)0.01226 (4)
O10.74298 (12)0.49534 (9)−0.02392 (6)0.01456 (14)
O20.85228 (12)0.57781 (10)−0.16483 (6)0.01670 (15)
O30.22559 (13)−0.03669 (11)−0.47062 (6)0.01945 (16)
O40.79221 (13)0.17036 (10)0.06402 (6)0.01427 (14)
N10.45340 (14)0.21529 (11)−0.13062 (7)0.01267 (15)
N20.30428 (14)0.08145 (11)−0.19556 (7)0.01319 (16)
N30.63606 (14)0.39053 (11)0.17463 (7)0.01323 (15)
N40.29685 (15)0.14866 (12)0.05729 (7)0.01486 (16)
C10.73803 (15)0.47312 (13)−0.12234 (8)0.01244 (17)
C20.57544 (15)0.31343 (12)−0.18524 (8)0.01178 (17)
C30.50547 (16)0.24117 (13)−0.29113 (8)0.01245 (17)
C40.33336 (16)0.09471 (13)−0.29373 (8)0.01263 (17)
C50.19154 (17)−0.03454 (13)−0.38437 (8)0.01427 (18)
C60.00133 (18)−0.16234 (15)−0.36737 (9)0.0198 (2)
H6A−0.0784−0.2390−0.43180.030*
H6B−0.0776−0.1019−0.34860.030*
H6C0.0386−0.2276−0.31080.030*
C70.58880 (17)0.30559 (15)−0.38093 (9)0.0172 (2)
H7A0.70160.4131−0.35600.026*
H7B0.48390.3224−0.43740.026*
H7C0.63450.2227−0.40700.026*
C80.79957 (17)0.53218 (14)0.22340 (9)0.01563 (18)
H80.87380.60150.18260.019*
C90.86018 (18)0.57730 (15)0.33271 (9)0.0189 (2)
H90.97140.67710.36490.023*
C100.75138 (19)0.47038 (16)0.39326 (9)0.0204 (2)
H100.79170.49590.46700.024*
C110.58221 (19)0.32535 (15)0.34283 (9)0.0187 (2)
H110.50670.25310.38210.022*
C120.52770 (17)0.28997 (14)0.23287 (8)0.01449 (18)
C130.34690 (17)0.13433 (14)0.17266 (9)0.01577 (19)
H13A0.37800.03100.18640.019*
H13B0.23020.12520.19700.019*
H1N40.236 (3)0.048 (2)0.0232 (14)0.025 (4)*
H2O40.773 (3)0.114 (2)0.1040 (14)0.024 (4)*
H2N40.207 (3)0.194 (3)0.0389 (16)0.040 (5)*
H1O40.895 (3)0.247 (3)0.0914 (17)0.041 (5)*
U11U22U33U12U13U23
Cu10.01549 (7)0.00997 (6)0.00858 (6)0.00179 (4)0.00302 (4)−0.00059 (4)
O10.0177 (4)0.0105 (3)0.0116 (3)0.0019 (3)0.0025 (3)0.0001 (2)
O20.0156 (4)0.0145 (3)0.0161 (4)0.0008 (3)0.0045 (3)0.0034 (3)
O30.0233 (4)0.0230 (4)0.0110 (3)0.0081 (3)0.0041 (3)−0.0014 (3)
O40.0171 (4)0.0098 (3)0.0128 (3)0.0018 (3)0.0037 (3)0.0014 (2)
N10.0140 (4)0.0102 (4)0.0107 (4)0.0014 (3)0.0029 (3)0.0003 (3)
N20.0157 (4)0.0109 (4)0.0094 (4)0.0016 (3)0.0023 (3)−0.0001 (3)
N30.0147 (4)0.0134 (4)0.0118 (4)0.0059 (3)0.0033 (3)−0.0005 (3)
N40.0167 (4)0.0139 (4)0.0116 (4)0.0033 (3)0.0037 (3)−0.0019 (3)
C10.0123 (4)0.0106 (4)0.0132 (4)0.0039 (3)0.0022 (3)0.0015 (3)
C20.0128 (4)0.0099 (4)0.0110 (4)0.0026 (3)0.0030 (3)0.0010 (3)
C30.0137 (4)0.0133 (4)0.0102 (4)0.0047 (3)0.0037 (3)0.0015 (3)
C40.0155 (4)0.0120 (4)0.0097 (4)0.0041 (3)0.0036 (3)0.0014 (3)
C50.0168 (5)0.0124 (4)0.0122 (4)0.0055 (3)0.0019 (4)−0.0002 (3)
C60.0207 (5)0.0167 (5)0.0146 (5)0.0008 (4)0.0015 (4)−0.0017 (3)
C70.0186 (5)0.0204 (5)0.0125 (4)0.0050 (4)0.0070 (4)0.0023 (3)
C80.0142 (4)0.0163 (5)0.0149 (5)0.0055 (4)0.0021 (4)−0.0029 (3)
C90.0171 (5)0.0204 (5)0.0164 (5)0.0074 (4)0.0001 (4)−0.0055 (4)
C100.0227 (5)0.0260 (6)0.0117 (5)0.0112 (4)0.0012 (4)−0.0034 (4)
C110.0230 (5)0.0229 (5)0.0117 (5)0.0097 (4)0.0057 (4)0.0009 (4)
C120.0182 (5)0.0156 (4)0.0119 (4)0.0087 (4)0.0047 (4)0.0005 (3)
C130.0191 (5)0.0152 (4)0.0133 (4)0.0055 (4)0.0062 (4)0.0017 (3)
Cu1—N11.9451 (9)C3—C71.4937 (15)
Cu1—N31.9973 (9)C4—C51.4724 (15)
Cu1—N42.0048 (10)C5—C61.5055 (16)
Cu1—O11.9874 (8)C6—H6A0.9600
Cu1—O42.3492 (8)C6—H6B0.9600
O1—C11.2917 (13)C6—H6C0.9600
O2—C11.2376 (13)C7—H7A0.9600
O3—C51.2252 (13)C7—H7B0.9600
O4—H2O40.717 (18)C7—H7C0.9600
O4—H1O40.78 (2)C8—C91.3852 (15)
N1—N21.3351 (12)C8—H80.9300
N1—C21.3558 (13)C9—C101.3895 (18)
N2—C41.3622 (13)C9—H90.9300
N3—C121.3422 (14)C10—C111.3868 (17)
N3—C81.3473 (14)C10—H100.9300
N4—C131.4736 (14)C11—C121.3862 (15)
N4—H1N40.849 (17)C11—H110.9300
N4—H2N40.84 (2)C12—C131.5056 (15)
C1—C21.4842 (14)C13—H13A0.9700
C2—C31.3899 (14)C13—H13B0.9700
C3—C41.4087 (14)
N1—Cu1—O182.74 (3)C3—C4—C5129.26 (9)
N1—Cu1—N3178.33 (4)O3—C5—C4121.35 (10)
O1—Cu1—N396.71 (3)O3—C5—C6121.30 (10)
N1—Cu1—N497.67 (4)C4—C5—C6117.34 (9)
O1—Cu1—N4162.48 (4)C5—C6—H6A109.5
N3—Cu1—N482.38 (4)C5—C6—H6B109.5
N1—Cu1—O494.29 (3)H6A—C6—H6B109.5
O1—Cu1—O488.99 (3)C5—C6—H6C109.5
N3—Cu1—O487.27 (3)H6A—C6—H6C109.5
N4—Cu1—O4108.40 (4)H6B—C6—H6C109.5
C1—O1—Cu1113.96 (6)C3—C7—H7A109.5
Cu1—O4—H2O4109.7 (14)C3—C7—H7B109.5
Cu1—O4—H1O4104.8 (15)H7A—C7—H7B109.5
H2O4—O4—H1O4106 (2)C3—C7—H7C109.5
N2—N1—C2110.24 (8)H7A—C7—H7C109.5
N2—N1—Cu1136.81 (7)H7B—C7—H7C109.5
C2—N1—Cu1112.89 (7)N3—C8—C9121.77 (11)
N1—N2—C4106.46 (8)N3—C8—H8119.1
C12—N3—C8119.53 (9)C9—C8—H8119.1
C12—N3—Cu1114.19 (7)C8—C9—C10118.62 (11)
C8—N3—Cu1126.10 (8)C8—C9—H9120.7
C13—N4—Cu1110.41 (7)C10—C9—H9120.7
C13—N4—H1N4109.1 (12)C9—C10—C11119.49 (10)
Cu1—N4—H1N4116.1 (11)C9—C10—H10120.3
C13—N4—H2N4110.5 (13)C11—C10—H10120.3
Cu1—N4—H2N4107.6 (13)C12—C11—C10118.78 (11)
H1N4—N4—H2N4102.8 (17)C12—C11—H11120.6
O2—C1—O1124.10 (9)C10—C11—H11120.6
O2—C1—C2120.82 (9)N3—C12—C11121.76 (10)
O1—C1—C2115.01 (9)N3—C12—C13116.41 (9)
N1—C2—C3109.44 (9)C11—C12—C13121.81 (10)
N1—C2—C1114.77 (8)N4—C13—C12110.16 (9)
C3—C2—C1135.63 (9)N4—C13—H13A109.6
C2—C3—C4103.02 (9)C12—C13—H13A109.6
C2—C3—C7128.53 (10)N4—C13—H13B109.6
C4—C3—C7128.43 (9)C12—C13—H13B109.6
N2—C4—C3110.82 (9)H13A—C13—H13B108.1
N2—C4—C5119.92 (9)
N1—Cu1—O1—C1−6.64 (7)O2—C1—C2—N1−176.16 (10)
N3—Cu1—O1—C1174.95 (7)O1—C1—C2—N11.03 (13)
N4—Cu1—O1—C1−99.11 (13)O2—C1—C2—C3−1.25 (19)
O4—Cu1—O1—C187.82 (7)O1—C1—C2—C3175.94 (11)
O1—Cu1—N1—N2−176.05 (11)N1—C2—C3—C40.34 (11)
N3—Cu1—N1—N2−105.3 (12)C1—C2—C3—C4−174.76 (11)
N4—Cu1—N1—N2−13.71 (11)N1—C2—C3—C7178.83 (10)
O4—Cu1—N1—N295.53 (11)C1—C2—C3—C73.7 (2)
O1—Cu1—N1—C27.03 (7)N1—N2—C4—C3−0.11 (12)
N3—Cu1—N1—C277.8 (12)N1—N2—C4—C5−179.58 (9)
N4—Cu1—N1—C2169.36 (7)C2—C3—C4—N2−0.14 (12)
O4—Cu1—N1—C2−81.40 (7)C7—C3—C4—N2−178.64 (10)
C2—N1—N2—C40.33 (12)C2—C3—C4—C5179.26 (10)
Cu1—N1—N2—C4−176.65 (8)C7—C3—C4—C50.77 (19)
N1—Cu1—N3—C12107.5 (12)N2—C4—C5—O3−172.17 (10)
O1—Cu1—N3—C12178.03 (7)C3—C4—C5—O38.47 (18)
N4—Cu1—N3—C1215.67 (8)N2—C4—C5—C68.75 (15)
O4—Cu1—N3—C12−93.31 (8)C3—C4—C5—C6−170.61 (11)
N1—Cu1—N3—C8−77.6 (12)C12—N3—C8—C90.21 (16)
O1—Cu1—N3—C8−7.01 (9)Cu1—N3—C8—C9−174.50 (8)
N4—Cu1—N3—C8−169.37 (9)N3—C8—C9—C101.62 (17)
O4—Cu1—N3—C881.65 (9)C8—C9—C10—C11−2.07 (18)
N1—Cu1—N4—C13158.90 (7)C9—C10—C11—C120.76 (18)
O1—Cu1—N4—C13−110.94 (12)C8—N3—C12—C11−1.61 (16)
N3—Cu1—N4—C13−22.79 (7)Cu1—N3—C12—C11173.71 (8)
O4—Cu1—N4—C1361.76 (8)C8—N3—C12—C13179.85 (9)
Cu1—O1—C1—O2−178.07 (8)Cu1—N3—C12—C13−4.84 (12)
Cu1—O1—C1—C24.84 (11)C10—C11—C12—N31.12 (17)
N2—N1—C2—C3−0.44 (12)C10—C11—C12—C13179.58 (10)
Cu1—N1—C2—C3177.32 (7)Cu1—N4—C13—C1225.68 (10)
N2—N1—C2—C1175.79 (8)N3—C12—C13—N4−14.04 (13)
Cu1—N1—C2—C1−6.45 (11)C11—C12—C13—N4167.42 (10)
D—H···AD—HH···AD···AD—H···A
O4—H1O4···O2i0.78 (2)1.90 (2)2.6782 (11)176 (2)
O4—H2O4···N2ii0.717 (18)2.049 (18)2.7581 (12)169.7 (19)
N4—H1N4···O4ii0.849 (17)2.055 (17)2.8542 (12)156.6 (16)
N4—H2N4···O1iii0.84 (2)2.50 (2)3.1017 (13)128.6 (16)
Table 1

Selected bond lengths (Å)

Cu1—N11.9451 (9)
Cu1—N31.9973 (9)
Cu1—N42.0048 (10)
Cu1—O11.9874 (8)
Cu1—O42.3492 (8)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O4—H1O4⋯O2i 0.78 (2)1.90 (2)2.6782 (11)176 (2)
O4—H2O4⋯N2ii 0.717 (18)2.049 (18)2.7581 (12)169.7 (19)
N4—H1N4⋯O4ii 0.849 (17)2.055 (17)2.8542 (12)156.6 (16)
N4—H2N4⋯O1iii 0.84 (2)2.50 (2)3.1017 (13)128.6 (16)

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  Synthesis, structure and magnetism of a new ferromagnetic hexanuclear nickel cluster with a dicubane-like core.

Authors:  Stefan Wörl; Hans Pritzkow; Igor O Fritsky; Roland Krämer
Journal:  Dalton Trans       Date:  2004-11-18       Impact factor: 4.390

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  One-pot synthesis of a new magnetically coupled heterometallic Cu(2)Mn(2) [2 x 2] molecular grid.

Authors:  Yurii S Moroz; Łukasz Szyrwiel; Serhiy Demeshko; Henryk Kozłowski; Franc Meyer; Igor O Fritsky
Journal:  Inorg Chem       Date:  2010-06-07       Impact factor: 5.165

4.  Effect of metal ionic radius and chelate ring alternation motif on stabilization of trivalent nickel and copper in binuclear complexes with double cis-oximato bridges.

Authors:  Olga M Kanderal; Henryk Kozlowski; Agnieszka Dobosz; Jolanta Swiatek-Kozlowska; Franc Meyer; Igor O Fritsky
Journal:  Dalton Trans       Date:  2005-03-15       Impact factor: 4.390

5.  Efficient catalytic phosphate ester cleavage by binuclear zinc(II) pyrazolate complexes as functional models of metallophosphatases.

Authors:  Larysa V Penkova; Anna Maciag; Elena V Rybak-Akimova; Matti Haukka; Vadim A Pavlenko; Turganbay S Iskenderov; Henryk Kozłowski; Franc Meyer; Igor O Fritsky
Journal:  Inorg Chem       Date:  2009-07-20       Impact factor: 5.165

6.  cyclo-Tetra-kis(μ-3-acetyl-4-methyl-1H-pyrazole-5-carboxyl-ato-κN,O:N,O)tetra-kis[aqua-copper(II)] tetra-deca-hydrate.

Authors:  Sergey Malinkin; Irina A Golenya; Vadim A Pavlenko; Matti Haukka; Turganbay S Iskenderov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-17
  6 in total

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