Literature DB >> 22058869

cyclo-Tetra-kis(μ-3-acetyl-4-methyl-1H-pyrazole-5-carboxyl-ato-κN,O:N,O)tetra-kis[aqua-copper(II)] tetra-deca-hydrate.

Sergey Malinkin, Irina A Golenya, Vadim A Pavlenko, Matti Haukka, Turganbay S Iskenderov.   

Abstract

The title compound, [Cu(4)(C(7)H(6)N(2)O(3))(4)(H(2)O)(4)]·14H(2)O, a tetra-nuclear [2 × 2] grid-type complex with S4 symmetry, contains four Cu(II) atoms which are bridged by four pyrazole-carboxyl-ate ligand anions and are additionally bonded to a water molecule. Each Cu(II) atom is coordinated by two O atoms of the carboxyl-ate and acetyl groups, two pyrazole N atoms of doubly deprotonated 3-acetyl-4-methyl-1H-pyrazole-5-carb-oxy-lic acid and one O atom of a water mol-ecule. The geometry at each Cu(II) atom is distorted square-pyramidal, with the two N and two O atoms in the equatorial plane and O atoms in the axial positions. O-H⋯O hydrogen-bonding interactions additionally stabilize the structure. One of the uncoordinated water molecules shows half-occupancy.

Entities:  

Year:  2011        PMID: 22058869      PMCID: PMC3200935          DOI: 10.1107/S1600536811030832

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of pyrazolate ligands in the preparation of polynuclear supra­molecular compounds, see: Piguet et al. (1997 ▶); Krämer et al. (2002 ▶); Zhang et al. (1996 ▶); Van der Vlugt et al. (2008 ▶); Klingele et al. (2007 ▶); Kovbasyuk et al. (2004 ▶); Pons et al. (2003 ▶). For the use of asymmetric ligands in the preparation of heterometallic complexes, see: Moroz et al. (2010 ▶). For related structures, see: Mokhir et al. (2002 ▶); Sliva et al. (1997 ▶); Wörl et al. (2005a ▶,b ▶); Świątek-Kozłowska et al. (2000 ▶). For the preparation of related ligands, see: Sachse et al. (2008 ▶).

Experimental

Crystal data

[Cu4(C7H6N2O3)4(H2O)4]·14H2O M = 1243.00 Tetragonal, a = 13.8502 (7) Å c = 26.280 (3) Å V = 5041.1 (6) Å3 Z = 4 Mo Kα radiation μ = 1.76 mm−1 T = 100 K 0.35 × 0.25 × 0.15 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.578, T max = 0.778 37816 measured reflections 3993 independent reflections 3254 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.097 S = 1.06 3993 reflections 165 parameters H-atom parameters constrained Δρmax = 1.20 e Å−3 Δρmin = −0.58 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811030832/jh2318sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030832/jh2318Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu4(C7H6N2O3)4(H2O)4]·14H2ODx = 1.638 Mg m3
Mr = 1243.00Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I41/aCell parameters from 9905 reflections
Hall symbol: -I 4adθ = 2.6–30.3°
a = 13.8502 (7) ŵ = 1.76 mm1
c = 26.280 (3) ÅT = 100 K
V = 5041.1 (6) Å3Block, blue
Z = 40.35 × 0.25 × 0.15 mm
F(000) = 2560
Bruker SMART APEXII CCD diffractometer3993 independent reflections
Radiation source: fine-focus sealed tube3254 reflections with I > 2σ(I)
flat graphite crystalRint = 0.037
Detector resolution: 16 pixels mm-1θmax = 30.9°, θmin = 1.7°
φ scans and ω scansh = −19→19
Absorption correction: multi-scan (SADABS; Sheldrick, 2008)k = −19→19
Tmin = 0.578, Tmax = 0.778l = −37→38
37816 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0463P)2 + 11.3899P] where P = (Fo2 + 2Fc2)/3
3993 reflections(Δ/σ)max < 0.001
165 parametersΔρmax = 1.20 e Å3
0 restraintsΔρmin = −0.58 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cu10.164669 (16)0.330841 (17)0.089037 (8)0.01628 (8)
O10.19490 (11)0.47600 (11)0.13584 (6)0.0220 (3)
O20.18857 (10)0.33808 (11)0.01594 (5)0.0191 (3)
O30.11824 (11)0.36118 (11)−0.05924 (5)0.0207 (3)
O40.30114 (11)0.29660 (13)0.09939 (6)0.0290 (4)
H4O0.33900.29830.07450.044*
H4P0.32830.31610.12590.044*
O50.42451 (14)0.31765 (18)0.02160 (7)0.0496 (6)
H5O0.48770.31620.02290.074*
H5P0.39940.3042−0.00490.074*
O60.34700 (12)0.60006 (12)0.10161 (6)0.0300 (3)
H6O0.33630.66190.09040.045*
H6P0.29160.56940.10890.045*
O70.32202 (12)0.28601 (12)−0.06718 (6)0.0275 (3)
H7O0.34300.3107−0.09390.041*
H7P0.26510.2997−0.06060.041*
O80.4789 (2)0.4970 (4)0.04080 (17)0.0610 (16)0.50
H8O0.45610.44290.03100.092*0.50
H8P0.43900.52780.05640.092*0.50
N10.13450 (12)0.30012 (11)0.16041 (6)0.0161 (3)
N20.03441 (11)0.36571 (11)0.06776 (6)0.0152 (3)
C10.17729 (14)0.46349 (14)0.18133 (8)0.0191 (4)
C20.18659 (19)0.54292 (15)0.21907 (9)0.0284 (5)
H2A0.24080.52930.24190.043*
H2B0.12690.54780.23890.043*
H2C0.19820.60400.20120.043*
C30.14765 (13)0.36668 (13)0.19793 (7)0.0159 (3)
C4−0.07281 (13)0.38673 (13)0.00422 (7)0.0161 (3)
C5−0.11564 (15)0.39273 (16)−0.04787 (7)0.0218 (4)
H5A−0.06530.3807−0.07330.033*
H5B−0.14300.4572−0.05310.033*
H5C−0.16670.3442−0.05130.033*
C60.02326 (13)0.36773 (13)0.01655 (7)0.0145 (3)
C70.11406 (13)0.35477 (13)−0.01228 (7)0.0159 (3)
U11U22U33U12U13U23
Cu10.01545 (12)0.02178 (13)0.01160 (11)−0.00004 (8)−0.00341 (8)0.00135 (8)
O10.0244 (7)0.0211 (7)0.0207 (7)−0.0033 (5)−0.0084 (5)0.0037 (5)
O20.0159 (6)0.0270 (7)0.0145 (6)−0.0023 (5)−0.0004 (5)0.0028 (5)
O30.0246 (7)0.0253 (7)0.0122 (6)−0.0018 (6)0.0017 (5)0.0031 (5)
O40.0222 (7)0.0459 (10)0.0190 (7)0.0079 (7)−0.0080 (6)−0.0070 (7)
O50.0298 (9)0.0881 (17)0.0307 (9)0.0203 (10)−0.0046 (8)−0.0200 (10)
O60.0302 (8)0.0300 (8)0.0297 (8)−0.0047 (7)−0.0066 (7)0.0033 (7)
O70.0244 (7)0.0294 (8)0.0288 (8)−0.0005 (6)0.0089 (6)0.0036 (6)
O80.0102 (14)0.102 (4)0.071 (3)0.0179 (18)−0.0138 (16)−0.068 (3)
N10.0212 (8)0.0149 (7)0.0121 (7)0.0011 (6)−0.0041 (6)−0.0001 (5)
N20.0158 (7)0.0197 (7)0.0102 (6)−0.0028 (5)−0.0003 (5)0.0028 (5)
C10.0199 (8)0.0157 (8)0.0216 (9)0.0016 (6)−0.0083 (7)−0.0002 (7)
C20.0416 (13)0.0164 (9)0.0270 (10)−0.0008 (8)−0.0070 (9)−0.0035 (8)
C30.0188 (8)0.0150 (8)0.0138 (8)0.0031 (6)−0.0046 (6)−0.0008 (6)
C40.0172 (8)0.0170 (8)0.0140 (8)−0.0046 (6)−0.0030 (6)0.0045 (6)
C50.0218 (9)0.0284 (10)0.0152 (8)−0.0034 (8)−0.0070 (7)0.0038 (7)
C60.0164 (8)0.0158 (8)0.0112 (7)−0.0037 (6)−0.0017 (6)0.0029 (6)
C70.0184 (8)0.0155 (8)0.0138 (8)−0.0037 (6)0.0009 (6)0.0025 (6)
Cu1—N21.9495 (16)O8—H8O0.8529
Cu1—O21.9519 (14)O8—H8P0.8080
Cu1—O41.9676 (15)N1—N2i1.329 (2)
Cu1—N11.9682 (16)N1—C31.362 (2)
Cu1—O12.3938 (15)N2—N1ii1.329 (2)
Cu1—Cu1i4.0600 (4)N2—C61.355 (2)
Cu1—Cu1ii4.0600 (4)C1—C31.469 (3)
Cu1—Cu1iii5.0814 (5)C1—C21.487 (3)
O1—C11.232 (3)C2—H2A0.9800
O2—C71.292 (2)C2—H2B0.9800
O3—C71.239 (2)C2—H2C0.9800
O4—H4O0.8400C3—C4i1.405 (3)
O4—H4P0.8355C4—C61.394 (2)
O5—H5O0.8760C4—C3ii1.405 (3)
O5—H5P0.7998C4—C51.494 (3)
O6—H6O0.9174C5—H5A0.9800
O6—H6P0.8985C5—H5B0.9800
O7—H7O0.8324C5—H5C0.9800
O7—H7P0.8289C6—C71.479 (3)
N2—Cu1—O282.06 (6)H7O—O7—H7P114.5
N2—Cu1—O4171.24 (6)H8O—O8—H8P111.3
O2—Cu1—O489.18 (6)N2i—N1—C3108.05 (15)
N2—Cu1—N197.49 (7)N2i—N1—Cu1130.03 (12)
O2—Cu1—N1170.07 (6)C3—N1—Cu1121.00 (13)
O4—Cu1—N191.15 (7)N1ii—N2—C6108.91 (15)
N2—Cu1—O195.81 (6)N1ii—N2—Cu1137.70 (12)
O2—Cu1—O1115.65 (6)C6—N2—Cu1113.30 (12)
O4—Cu1—O187.90 (6)O1—C1—C3118.16 (17)
N1—Cu1—O174.28 (6)O1—C1—C2121.73 (18)
N2—Cu1—Cu1i94.38 (5)C3—C1—C2120.11 (18)
O2—Cu1—Cu1i123.35 (4)C1—C2—H2A109.5
O4—Cu1—Cu1i90.48 (5)C1—C2—H2B109.5
N1—Cu1—Cu1i46.73 (5)H2A—C2—H2B109.5
O1—Cu1—Cu1i120.95 (4)C1—C2—H2C109.5
N2—Cu1—Cu1ii44.57 (5)H2A—C2—H2C109.5
O2—Cu1—Cu1ii125.84 (4)H2B—C2—H2C109.5
O4—Cu1—Cu1ii144.00 (5)N1—C3—C4i109.93 (16)
N1—Cu1—Cu1ii55.97 (5)N1—C3—C1116.13 (16)
O1—Cu1—Cu1ii70.56 (4)C4i—C3—C1133.70 (17)
Cu1i—Cu1—Cu1ii77.482 (5)C6—C4—C3ii103.01 (15)
N2—Cu1—Cu1iii43.82 (5)C6—C4—C5127.02 (18)
O2—Cu1—Cu1iii100.07 (4)C3ii—C4—C5129.97 (17)
O4—Cu1—Cu1iii139.12 (6)C4—C5—H5A109.5
N1—Cu1—Cu1iii73.39 (5)C4—C5—H5B109.5
O1—Cu1—Cu1iii121.81 (4)H5A—C5—H5B109.5
Cu1i—Cu1—Cu1iii51.259 (3)C4—C5—H5C109.5
Cu1ii—Cu1—Cu1iii51.259 (3)H5A—C5—H5C109.5
C1—O1—Cu1110.22 (12)H5B—C5—H5C109.5
C7—O2—Cu1116.03 (12)N2—C6—C4110.08 (16)
Cu1—O4—H4O119.0N2—C6—C7114.16 (15)
Cu1—O4—H4P118.0C4—C6—C7135.66 (17)
H4O—O4—H4P111.1O3—C7—O2123.20 (17)
H5O—O5—H5P117.6O3—C7—C6122.78 (17)
H6O—O6—H6P111.8O2—C7—C6114.02 (15)
D—H···AD—HH···AD···AD—H···A
O4—H4O···O50.841.842.680 (3)173.
O4—H4P···O3iv0.842.032.868 (2)177.
O5—H5O···O5v0.882.222.808 (4)124.
O5—H5P···O70.801.972.766 (3)171.
O6—H6O···O7vi0.921.842.752 (2)177.
O6—H6P···O10.901.992.863 (2)163.
O7—H7O···O6vii0.831.922.707 (2)157.
O7—H7P···O30.832.213.016 (2)166.
O7—H7P···O20.832.332.951 (2)132.
O8—H8O···O50.851.812.644 (5)167.
O8—H8P···O60.812.012.815 (4)174.
Cu1—N21.9495 (16)
Cu1—O21.9519 (14)
Cu1—O41.9676 (15)
Cu1—N11.9682 (16)
Cu1—O12.3938 (15)
N2—Cu1—O282.06 (6)
O2—Cu1—O489.18 (6)
N2—Cu1—N197.49 (7)
O4—Cu1—N191.15 (7)
N1—Cu1—O174.28 (6)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4O⋯O50.841.842.680 (3)173
O4—H4P⋯O3iv0.842.032.868 (2)177
O5—H5O⋯O5v0.882.222.808 (4)124
O5—H5P⋯O70.801.972.766 (3)171
O6—H6O⋯O7vi0.921.842.752 (2)177
O6—H6P⋯O10.901.992.863 (2)163
O7—H7O⋯O6vii0.831.922.707 (2)157
O7—H7P⋯O30.832.213.016 (2)166
O7—H7P⋯O20.832.332.951 (2)132
O8—H8O⋯O50.851.812.644 (5)167
O8—H8P⋯O60.812.012.815 (4)174

Symmetry codes: (iv) ; (v) ; (vi) ; (vii) .

  7 in total

1.  Helicates as Versatile Supramolecular Complexes.

Authors:  Claude Piguet; Gérald Bernardinelli; Gérard Hopfgartner
Journal:  Chem Rev       Date:  1997-10-01       Impact factor: 60.622

2.  Synthesis, structure and magnetism of a new ferromagnetic hexanuclear nickel cluster with a dicubane-like core.

Authors:  Stefan Wörl; Hans Pritzkow; Igor O Fritsky; Roland Krämer
Journal:  Dalton Trans       Date:  2004-11-18       Impact factor: 4.390

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  One-pot synthesis of a new magnetically coupled heterometallic Cu(2)Mn(2) [2 x 2] molecular grid.

Authors:  Yurii S Moroz; Łukasz Szyrwiel; Serhiy Demeshko; Henryk Kozłowski; Franc Meyer; Igor O Fritsky
Journal:  Inorg Chem       Date:  2010-06-07       Impact factor: 5.165

5.  Tetranuclear CoII, MnII, and CuII complexes of a novel binucleating pyrazolate ligand preorganized for the self-assembly of compact [2 x 2]-grid structures.

Authors:  Jarl Ivar van der Vlugt; Serhiy Demeshko; Sebastian Dechert; Franc Meyer
Journal:  Inorg Chem       Date:  2008-02-01       Impact factor: 5.165

6.  Pyrazolate-based copper(II) and nickel(II) [2 x 2] grid complexes: protonation-dependent self-assembly, structures and properties.

Authors:  Julia Klingele; Alexander I Prikhod'ko; Guido Leibeling; Serhiy Demeshko; Sebastian Dechert; Franc Meyer
Journal:  Dalton Trans       Date:  2007-04-12       Impact factor: 4.390

7.  On/off regulation of catalysis by allosteric control of metal complex nuclearity.

Authors:  Larisa Kovbasyuk; Hans Pritzkow; Roland Krämer; Igor O Fritsky
Journal:  Chem Commun (Camb)       Date:  2004-03-04       Impact factor: 6.222

  7 in total
  1 in total

1.  (3-Acetyl-5-carboxyl-ato-4-methyl-1H-pyrazol-1-ido-κ(2) N (1),O (5))aqua-[(pyridin-2-yl)methanamine-κ(2) N,N']copper(II).

Authors:  Sergey Malinkin; Vadim A Pavlenko; Elzbieta Gumienna-Kontecka; Elena V Prisyazhnaya; Turganbay S Iskenderov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-03
  1 in total

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