Literature DB >> 23457257

Evolution of the animal apoptosis network.

Christian M Zmasek1, Adam Godzik.   

Abstract

The number of available eukaryotic genomes has expanded to the point where we can evaluate the complete evolutionary history of many cellular processes. Such analyses for the apoptosis regulatory networks suggest that this network already existed in the ancestor of the entire animal kingdom (Metazoa) in a form more complex than in some popular animal model organisms. This supports the growing realization that regulatory networks do not necessarily evolve from simple to complex and that the relative simplicity of these networks in nematodes and insects does not represent an ancestral state, but is the result of secondary simplifications. Network evolution is not a process of monotonous increase in complexity, but a dynamic process that includes lineage-specific gene losses and expansions, protein domain reshuffling, and emergence/reemergence of similar protein architectures by parallel evolution. Studying the evolution of such networks is a challenging yet interesting subject for research and investigation, and such studies on the apoptosis networks provide us with interesting hints of how these networks, critical in so many human diseases, have developed.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23457257      PMCID: PMC3578353          DOI: 10.1101/cshperspect.a008649

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  77 in total

Review 1.  The domains of death: evolution of the apoptosis machinery.

Authors:  L Aravind; V M Dixit; E V Koonin
Journal:  Trends Biochem Sci       Date:  1999-02       Impact factor: 13.807

2.  Molecular evolution of apoptotic pathways: cloning of key domains from sponges (Bcl-2 homology domains and death domains) and their phylogenetic relationships.

Authors:  M Wiens; A Krasko; C I Müller; W E Müller
Journal:  J Mol Evol       Date:  2000-06       Impact factor: 2.395

Review 3.  Molecular mechanisms of caspase regulation during apoptosis.

Authors:  Stefan J Riedl; Yigong Shi
Journal:  Nat Rev Mol Cell Biol       Date:  2004-11       Impact factor: 94.444

4.  Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups".

Authors:  Vladimir Hampl; Laura Hug; Jessica W Leigh; Joel B Dacks; B Franz Lang; Alastair G B Simpson; Andrew J Roger
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-23       Impact factor: 11.205

5.  The dynamic genome of Hydra.

Authors:  Jarrod A Chapman; Ewen F Kirkness; Oleg Simakov; Steven E Hampson; Therese Mitros; Thomas Weinmaier; Thomas Rattei; Prakash G Balasubramanian; Jon Borman; Dana Busam; Kathryn Disbennett; Cynthia Pfannkoch; Nadezhda Sumin; Granger G Sutton; Lakshmi Devi Viswanathan; Brian Walenz; David M Goodstein; Uffe Hellsten; Takeshi Kawashima; Simon E Prochnik; Nicholas H Putnam; Shengquiang Shu; Bruce Blumberg; Catherine E Dana; Lydia Gee; Dennis F Kibler; Lee Law; Dirk Lindgens; Daniel E Martinez; Jisong Peng; Philip A Wigge; Bianca Bertulat; Corina Guder; Yukio Nakamura; Suat Ozbek; Hiroshi Watanabe; Konstantin Khalturin; Georg Hemmrich; André Franke; René Augustin; Sebastian Fraune; Eisuke Hayakawa; Shiho Hayakawa; Mamiko Hirose; Jung Shan Hwang; Kazuho Ikeo; Chiemi Nishimiya-Fujisawa; Atshushi Ogura; Toshio Takahashi; Patrick R H Steinmetz; Xiaoming Zhang; Roland Aufschnaiter; Marie-Kristin Eder; Anne-Kathrin Gorny; Willi Salvenmoser; Alysha M Heimberg; Benjamin M Wheeler; Kevin J Peterson; Angelika Böttger; Patrick Tischler; Alexander Wolf; Takashi Gojobori; Karin A Remington; Robert L Strausberg; J Craig Venter; Ulrich Technau; Bert Hobmayer; Thomas C G Bosch; Thomas W Holstein; Toshitaka Fujisawa; Hans R Bode; Charles N David; Daniel S Rokhsar; Robert E Steele
Journal:  Nature       Date:  2010-03-14       Impact factor: 49.962

6.  Identification of DIABLO, a mammalian protein that promotes apoptosis by binding to and antagonizing IAP proteins.

Authors:  A M Verhagen; P G Ekert; M Pakusch; J Silke; L M Connolly; G E Reid; R L Moritz; R J Simpson; D L Vaux
Journal:  Cell       Date:  2000-07-07       Impact factor: 41.582

7.  Apoptotic molecular machinery: vastly increased complexity in vertebrates revealed by genome comparisons.

Authors:  L Aravind; V M Dixit; E V Koonin
Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

8.  The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.

Authors:  Nicole King; M Jody Westbrook; Susan L Young; Alan Kuo; Monika Abedin; Jarrod Chapman; Stephen Fairclough; Uffe Hellsten; Yoh Isogai; Ivica Letunic; Michael Marr; David Pincus; Nicholas Putnam; Antonis Rokas; Kevin J Wright; Richard Zuzow; William Dirks; Matthew Good; David Goodstein; Derek Lemons; Wanqing Li; Jessica B Lyons; Andrea Morris; Scott Nichols; Daniel J Richter; Asaf Salamov; J G I Sequencing; Peer Bork; Wendell A Lim; Gerard Manning; W Todd Miller; William McGinnis; Harris Shapiro; Robert Tjian; Igor V Grigoriev; Daniel Rokhsar
Journal:  Nature       Date:  2008-02-14       Impact factor: 49.962

9.  The Trichoplax genome and the nature of placozoans.

Authors:  Mansi Srivastava; Emina Begovic; Jarrod Chapman; Nicholas H Putnam; Uffe Hellsten; Takeshi Kawashima; Alan Kuo; Therese Mitros; Asaf Salamov; Meredith L Carpenter; Ana Y Signorovitch; Maria A Moreno; Kai Kamm; Jane Grimwood; Jeremy Schmutz; Harris Shapiro; Igor V Grigoriev; Leo W Buss; Bernd Schierwater; Stephen L Dellaporta; Daniel S Rokhsar
Journal:  Nature       Date:  2008-08-21       Impact factor: 49.962

10.  A molecular timescale of eukaryote evolution and the rise of complex multicellular life.

Authors:  S Blair Hedges; Jaime E Blair; Maria L Venturi; Jason L Shoe
Journal:  BMC Evol Biol       Date:  2004-01-28       Impact factor: 3.260

View more
  25 in total

Review 1.  Just So Stories about the Evolution of Apoptosis.

Authors:  Douglas R Green; Patrick Fitzgerald
Journal:  Curr Biol       Date:  2016-07-11       Impact factor: 10.834

Review 2.  The Tumor Necrosis Factor Family: Family Conventions and Private Idiosyncrasies.

Authors:  David Wallach
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-10-01       Impact factor: 10.005

3.  Role of inositol polyphosphates in programed cell death in Dictyostelium discoideum and its developmental life cycle.

Authors:  Qudes Al-Anbaky; Zeiyad Al-Karakooly; Richard Connor; Lisa Williams; Azure Yarbrough; John Bush; Nawab Ali
Journal:  Mol Cell Biochem       Date:  2018-04-20       Impact factor: 3.396

4.  Breakdown of coral colonial form under reduced pH conditions is initiated in polyps and mediated through apoptosis.

Authors:  Hagit Kvitt; Esti Kramarsky-Winter; Keren Maor-Landaw; Keren Zandbank; Ariel Kushmaro; Hanna Rosenfeld; Maoz Fine; Dan Tchernov
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

Review 5.  Evolution of Myeloid Cells.

Authors:  Daniel R Barreda; Harold R Neely; Martin F Flajnik
Journal:  Microbiol Spectr       Date:  2016-06

Review 6.  Inseparable tandem: evolution chooses ATP and Ca2+ to control life, death and cellular signalling.

Authors:  Helmut Plattner; Alexei Verkhratsky
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-08-05       Impact factor: 6.237

7.  Apoptosis in Living Animals Is Assisted by Scavenger Cells and Thus May Not Mainly Go through the Cytochrome C-Caspase Pathway.

Authors:  Bingya Liu; Ningzhi Xu; Yangao Man; Haihong Shen; Itzhak Avital; Alexander Stojadinovic; D Joshua Liao
Journal:  J Cancer       Date:  2013-11-15       Impact factor: 4.207

8.  Dimorphic ovary differentiation in honeybee (Apis mellifera) larvae involves caste-specific expression of homologs of ark and buffy cell death genes.

Authors:  Rodrigo Pires Dallacqua; Márcia Maria Gentile Bitondi
Journal:  PLoS One       Date:  2014-05-20       Impact factor: 3.240

9.  Mitochondrial Apoptotic Pathway Is Activated by H2O2-Mediated Oxidative Stress in BmN-SWU1 Cells from Bombyx mori Ovary.

Authors:  Peng Chen; Yan-Fen Hu; La Wang; Wen-Fu Xiao; Xi-Yan Bao; Chun Pan; Hua-Shan Yi; Xiang-Yun Chen; Min-Hui Pan; Cheng Lu
Journal:  PLoS One       Date:  2015-07-30       Impact factor: 3.240

10.  The characterization of sponge NLRs provides insight into the origin and evolution of this innate immune gene family in animals.

Authors:  Benedict Yuen; Joanne M Bayes; Sandie M Degnan
Journal:  Mol Biol Evol       Date:  2013-10-03       Impact factor: 16.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.