Literature DB >> 23450725

Susceptibility to childhood-onset rheumatoid arthritis: investigation of a weighted genetic risk score that integrates cumulative effects of variants at five genetic loci.

Sampath Prahalad1, Karen N Conneely, Yunxuan Jiang, Marc Sudman, Carol A Wallace, Milton R Brown, Lori A Ponder, Mina Rohani-Pichavant, Michael E Zwick, David J Cutler, Sheila T Angeles-Han, Larry B Vogler, Christine Kennedy, Kelly Rouster-Stevens, Carol A Wise, Marilynn Punaro, Ann M Reed, Elizabeth D Mellins, John F Bohnsack, David N Glass, Susan D Thompson.   

Abstract

OBJECTIVE: Children with childhood-onset rheumatoid arthritis (RA) include those with rheumatoid factor or anti-citrullinated protein antibody-positive juvenile idiopathic arthritis. To test the hypothesis that adult-onset RA-associated variants are also associated with childhood-onset RA, we investigated RA-associated variants at 5 loci in a cohort of patients with childhood-onset RA. We also assessed the cumulative association of these variants in susceptibility to childhood-onset RA using a weighted genetic risk score (wGRS).
METHODS: A total of 155 children with childhood-onset RA and 684 healthy controls were genotyped for 5 variants in the PTPN22, TRAF1/C5, STAT4, and TNFAIP3 loci. High-resolution HLA-DRB1 genotypes were available for 149 cases and 373 controls. We tested each locus for association with childhood-onset RA via logistic regression. We also computed a wGRS for each subject, with weights based on the natural log of the published odds ratios (ORs) for the alleles investigated, and used logistic regression to test the wGRS for association with childhood-onset RA.
RESULTS: Childhood-onset RA was associated with TNFAIP3 rs10499194 (OR 0.60 [95% confidence interval 0.44-0.83]), PTPN22 rs2476601 (OR 1.61 [95% confidence interval 1.11-2.31]), and STAT4 rs7574865 (OR 1.41 [95% confidence interval 1.06-1.87]) variants. The wGRS was significantly different between cases and controls (P < 2 × 10(-16) ). Individuals in the third to fifth quintiles of wGRS had a significantly increased disease risk compared to baseline (individuals in the first quintile). Higher wGRS was associated with increased risk of childhood-onset RA, especially among males.
CONCLUSION: The magnitude and direction of the association between TNFAIP3, STAT4, and PTPN22 variants and childhood-onset RA are similar to those observed in RA, suggesting that adult-onset RA and childhood-onset RA share common genetic risk factors. Using a wGRS, we have demonstrated the cumulative association of RA-associated variants with susceptibility to childhood-onset RA.
Copyright © 2013 by the American College of Rheumatology.

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Year:  2013        PMID: 23450725      PMCID: PMC3683854          DOI: 10.1002/art.37913

Source DB:  PubMed          Journal:  Arthritis Rheum        ISSN: 0004-3591


  15 in total

1.  Hierarchy of risk of childhood-onset rheumatoid arthritis conferred by HLA-DRB1 alleles encoding the shared epitope.

Authors:  Sampath Prahalad; Susan D Thompson; Karen N Conneely; Yunxuan Jiang; Traci Leong; Jennifer Prozonic; Milton R Brown; Lori A Ponder; Sheila T Angeles-Han; Larry B Vogler; Christine Kennedy; Carol A Wallace; Carol A Wise; Marilynn Punaro; Ann Reed; Jane L Park; Elizabeth D Mellins; Andrew S Zeft; John F Bohnsack; David N Glass
Journal:  Arthritis Rheum       Date:  2012-03

2.  Two independent alleles at 6q23 associated with risk of rheumatoid arthritis.

Authors:  Robert M Plenge; Chris Cotsapas; Leela Davies; Alkes L Price; Paul I W de Bakker; Julian Maller; Itsik Pe'er; Noel P Burtt; Brendan Blumenstiel; Matt DeFelice; Melissa Parkin; Rachel Barry; Wendy Winslow; Claire Healy; Robert R Graham; Benjamin M Neale; Elena Izmailova; Ronenn Roubenoff; Alexander N Parker; Roberta Glass; Elizabeth W Karlson; Nancy Maher; David A Hafler; David M Lee; Michael F Seldin; Elaine F Remmers; Annette T Lee; Leonid Padyukov; Lars Alfredsson; Jonathan Coblyn; Michael E Weinblatt; Stacey B Gabriel; Shaun Purcell; Lars Klareskog; Peter K Gregersen; Nancy A Shadick; Mark J Daly; David Altshuler
Journal:  Nat Genet       Date:  2007-11-04       Impact factor: 38.330

Review 3.  The shared epitope hypothesis. An approach to understanding the molecular genetics of susceptibility to rheumatoid arthritis.

Authors:  P K Gregersen; J Silver; R J Winchester
Journal:  Arthritis Rheum       Date:  1987-11

Review 4.  The PTPN22 C1858T functional polymorphism and autoimmune diseases--a meta-analysis.

Authors:  Y H Lee; Y H Rho; S J Choi; J D Ji; G G Song; S K Nath; J B Harley
Journal:  Rheumatology (Oxford)       Date:  2006-06-07       Impact factor: 7.580

5.  Increased prevalence of familial autoimmunity in simplex and multiplex families with juvenile rheumatoid arthritis.

Authors:  Sampath Prahalad; Edith S Shear; Susan D Thompson; Edward H Giannini; David N Glass
Journal:  Arthritis Rheum       Date:  2002-07

6.  STAT4 and the risk of rheumatoid arthritis and systemic lupus erythematosus.

Authors:  Elaine F Remmers; Robert M Plenge; Annette T Lee; Robert R Graham; Geoffrey Hom; Timothy W Behrens; Paul I W de Bakker; Julie M Le; Hye-Soon Lee; Franak Batliwalla; Wentian Li; Seth L Masters; Matthew G Booty; John P Carulli; Leonid Padyukov; Lars Alfredsson; Lars Klareskog; Wei V Chen; Christopher I Amos; Lindsey A Criswell; Michael F Seldin; Daniel L Kastner; Peter K Gregersen
Journal:  N Engl J Med       Date:  2007-09-06       Impact factor: 91.245

7.  Familial clustering of rheumatoid arthritis with other autoimmune diseases.

Authors:  J P Lin; J M Cash; S Z Doyle; S Peden; K Kanik; C I Amos; S J Bale; R L Wilder
Journal:  Hum Genet       Date:  1998-10       Impact factor: 4.132

8.  Familial associations of rheumatoid arthritis with autoimmune diseases and related conditions.

Authors:  Kari Hemminki; Xinjun Li; Jan Sundquist; Kristina Sundquist
Journal:  Arthritis Rheum       Date:  2009-03

9.  Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.

Authors:  Robert R Graham; Chris Cotsapas; Leela Davies; Rachel Hackett; Christopher J Lessard; Joanlise M Leon; Noel P Burtt; Candace Guiducci; Melissa Parkin; Casey Gates; Robert M Plenge; Timothy W Behrens; Joan E Wither; John D Rioux; Paul R Fortin; Deborah Cunninghame Graham; Andrew K Wong; Timothy J Vyse; Mark J Daly; David Altshuler; Kathy L Moser; Patrick M Gaffney
Journal:  Nat Genet       Date:  2008-09       Impact factor: 38.330

Review 10.  Defining the role of the MHC in autoimmunity: a review and pooled analysis.

Authors:  Michelle M A Fernando; Christine R Stevens; Emily C Walsh; Philip L De Jager; Philippe Goyette; Robert M Plenge; Timothy J Vyse; John D Rioux
Journal:  PLoS Genet       Date:  2008-04-25       Impact factor: 5.917

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  18 in total

Review 1.  The Challenges and Opportunities of Classifying Childhood Arthritis.

Authors:  Dax G Rumsey; Ronald M Laxer
Journal:  Curr Rheumatol Rep       Date:  2020-01-11       Impact factor: 4.592

2.  HLA Associations in a Cohort of Children With Juvenile Idiopathic Arthritis With and Without Uveitis.

Authors:  Sheila T Angeles-Han; Courtney McCracken; Steven Yeh; Se Ryeong Jang; Kirsten Jenkins; Spencer Cope; John Bohnsack; Aimee Hersh; Susan D Thompson; Sampath Prahalad
Journal:  Invest Ophthalmol Vis Sci       Date:  2015-09       Impact factor: 4.799

3.  [Trans-ethnic analysis of susceptibility variants in IgA nephropathy].

Authors:  Y Q Kang; Y M Zhang; P Hou; S F Shi; L J Liu; X J Zhou; J C Lv; H Zhang
Journal:  Beijing Da Xue Xue Bao Yi Xue Ban       Date:  2019-06-18

4.  Whole exome sequencing in a juvenile idiopathic arthritis large family with SERPINA1 gene mutations.

Authors:  Cyprian Popescu
Journal:  BMC Rheumatol       Date:  2022-07-04

Review 5.  Immunogenetics of juvenile idiopathic arthritis: A comprehensive review.

Authors:  Aimee O Hersh; Sampath Prahalad
Journal:  J Autoimmun       Date:  2015-08-21       Impact factor: 7.094

Review 6.  Review: Genetics and the Classification of Arthritis in Adults and Children.

Authors:  Peter A Nigrovic; Soumya Raychaudhuri; Susan D Thompson
Journal:  Arthritis Rheumatol       Date:  2017-12-01       Impact factor: 10.995

7.  Gout in a 15-year-old boy with juvenile idiopathic arthritis: a case study.

Authors:  Hallie Morris; Kristen Grant; Geetika Khanna; Andrew J White
Journal:  Pediatr Rheumatol Online J       Date:  2014-01-06       Impact factor: 3.054

8.  Symptoms of periodontitis and antibody responses to Porphyromonas gingivalis in juvenile idiopathic arthritis.

Authors:  Lauren Lange; Geoffrey M Thiele; Courtney McCracken; Gabriel Wang; Lori A Ponder; Sheila T Angeles-Han; Kelly A Rouster-Stevens; Aimee O Hersh; Larry B Vogler; John F Bohnsack; Shelly Abramowicz; Ted R Mikuls; Sampath Prahalad
Journal:  Pediatr Rheumatol Online J       Date:  2016-02-09       Impact factor: 3.054

9.  Cumulative effects of variants identified by genome-wide association studies in IgA nephropathy.

Authors:  Xu-Jie Zhou; Yuan-Yuan Qi; Ping Hou; Ji-Cheng Lv; Su-Fang Shi; Li-Jun Liu; Na Zhao; Hong Zhang
Journal:  Sci Rep       Date:  2014-05-09       Impact factor: 4.379

Review 10.  Identification of rheumatoid arthritis biomarkers based on single nucleotide polymorphisms and haplotype blocks: A systematic review and meta-analysis.

Authors:  Mohamed N Saad; Mai S Mabrouk; Ayman M Eldeib; Olfat G Shaker
Journal:  J Adv Res       Date:  2015-02-04       Impact factor: 10.479

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