Literature DB >> 23440683

Gaussian mixture model-based classification of dynamic contrast enhanced MRI data for identifying diverse tumor microenvironments: preliminary results.

S H Han1, E Ackerstaff, R Stoyanova, S Carlin, W Huang, J A Koutcher, J K Kim, G Cho, G Jang, H Cho.   

Abstract

Tumor hypoxia develops heterogeneously, affects radiation sensitivity and the development of metastases. Prognostic information derived from the in vivo characterization of the spatial distribution of hypoxic areas in solid tumors can be of value for radiation therapy planning and for monitoring the early treatment response. Tumor hypoxia is caused by an imbalance between the supply and consumption of oxygen. The tumor oxygen supply is inherently linked to its vasculature and perfusion which can be evaluated by dynamic contrast enhanced (DCE-) MRI using the contrast agent Gd-DTPA. Thus, we hypothesize that DCE-MRI data may provide surrogate information regarding tumor hypoxia. In this study, DCE-MRI data from a rat prostate tumor model were analysed with a Gaussian mixture model (GMM)-based classification to identify perfused, hypoxic and necrotic areas for a total of ten tumor slices from six rats, of which one slice was used as training data for GMM classifications. The results of pattern recognition analyzes were validated by comparison to corresponding Akep maps defining the perfused area (0.84 ± 0.09 overlap), hematoxylin and eosin (H&E)-stained tissue sections defining necrosis (0.64 ± 0.15 overlap) and pimonidazole-stained sections defining hypoxia (0.72 ± 0.17 overlap), respectively. Our preliminary data indicate the feasibility of a GMM-based classification to identify tumor hypoxia, necrosis and perfusion/permeability from non-invasively acquired, in vivo DCE-MRI data alone, possibly obviating the need for invasive procedures, such as biopsies, or exposure to radioactivity, such as positron emission tomography (PET) exams.
Copyright © 2013 John Wiley & Sons, Ltd.

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Year:  2013        PMID: 23440683      PMCID: PMC3706205          DOI: 10.1002/nbm.2888

Source DB:  PubMed          Journal:  NMR Biomed        ISSN: 0952-3480            Impact factor:   4.044


  45 in total

1.  Theoretical simulation of oxygen transport to brain by networks of microvessels: effects of oxygen supply and demand on tissue hypoxia.

Authors:  T W Secomb; R Hsu; N B Beamer; B M Coull
Journal:  Microcirculation       Date:  2000-08       Impact factor: 2.628

Review 2.  Hypoxia: importance in tumor biology, noninvasive measurement by imaging, and value of its measurement in the management of cancer therapy.

Authors:  James L Tatum; Gary J Kelloff; Robert J Gillies; Jeffrey M Arbeit; J Martin Brown; K S Clifford Chao; J Donald Chapman; William C Eckelman; Anthony W Fyles; Amato J Giaccia; Richard P Hill; Cameron J Koch; Murali Cherukuri Krishna; Kenneth A Krohn; Jason S Lewis; Ralph P Mason; Giovanni Melillo; Anwar R Padhani; Garth Powis; Joseph G Rajendran; Richard Reba; Simon P Robinson; Gregg L Semenza; Harold M Swartz; Peter Vaupel; David Yang; Barbara Croft; John Hoffman; Guoying Liu; Helen Stone; Daniel Sullivan
Journal:  Int J Radiat Biol       Date:  2006-10       Impact factor: 2.694

Review 3.  Tumor hypoxia imaging.

Authors:  Inna Serganova; John Humm; Clifton Ling; Ronald Blasberg
Journal:  Clin Cancer Res       Date:  2006-09-15       Impact factor: 12.531

Review 4.  Hypoxia in cancer: significance and impact on clinical outcome.

Authors:  Peter Vaupel; Arnulf Mayer
Journal:  Cancer Metastasis Rev       Date:  2007-06       Impact factor: 9.264

Review 5.  Modeling tracer kinetics in dynamic Gd-DTPA MR imaging.

Authors:  P S Tofts
Journal:  J Magn Reson Imaging       Date:  1997 Jan-Feb       Impact factor: 4.813

Review 6.  Tumor microenvironmental physiology and its implications for radiation oncology.

Authors:  Peter Vaupel
Journal:  Semin Radiat Oncol       Date:  2004-07       Impact factor: 5.934

Review 7.  Assessment of tumor oxygenation by electron paramagnetic resonance: principles and applications.

Authors:  Bernard Gallez; Christine Baudelet; Bénédicte F Jordan
Journal:  NMR Biomed       Date:  2004-08       Impact factor: 4.044

Review 8.  Microenvironmental control of gene expression: implications for tumor angiogenesis, progression, and metastasis.

Authors:  G U Dachs; D J Chaplin
Journal:  Semin Radiat Oncol       Date:  1998-07       Impact factor: 5.934

9.  Noninvasive multimodality imaging of the tumor microenvironment: registered dynamic magnetic resonance imaging and positron emission tomography studies of a preclinical tumor model of tumor hypoxia.

Authors:  HyungJoon Cho; Ellen Ackerstaff; Sean Carlin; Mihaela E Lupu; Ya Wang; Asif Rizwan; Joseph O'Donoghue; C Clifton Ling; John L Humm; Pat B Zanzonico; Jason A Koutcher
Journal:  Neoplasia       Date:  2009-03       Impact factor: 5.715

10.  A modeling approach for quantifying tumor hypoxia with [F-18]fluoromisonidazole PET time-activity data.

Authors:  J J Casciari; M M Graham; J S Rasey
Journal:  Med Phys       Date:  1995-07       Impact factor: 4.071

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  8 in total

1.  Multiparametric MRI and Coregistered Histology Identify Tumor Habitats in Breast Cancer Mouse Models.

Authors:  Bruna V Jardim-Perassi; Suning Huang; William Dominguez-Viqueira; Jan Poleszczuk; Mikalai M Budzevich; Mahmoud A Abdalah; Smitha R Pillai; Epifanio Ruiz; Marilyn M Bui; Debora A P C Zuccari; Robert J Gillies; Gary V Martinez
Journal:  Cancer Res       Date:  2019-06-11       Impact factor: 12.701

2.  Automation of pattern recognition analysis of dynamic contrast-enhanced MRI data to characterize intratumoral vascular heterogeneity.

Authors:  SoHyun Han; Radka Stoyanova; Hansol Lee; Sean D Carlin; Jason A Koutcher; HyungJoon Cho; Ellen Ackerstaff
Journal:  Magn Reson Med       Date:  2017-07-20       Impact factor: 4.668

3.  A comparison of individual and population-derived vascular input functions for quantitative DCE-MRI in rats.

Authors:  David A Hormuth; Jack T Skinner; Mark D Does; Thomas E Yankeelov
Journal:  Magn Reson Imaging       Date:  2014-01-07       Impact factor: 2.546

4.  Multiparametric dynamic contrast-enhanced ultrasound imaging of prostate cancer.

Authors:  Rogier R Wildeboer; Arnoud W Postema; Libertario Demi; Maarten P J Kuenen; Hessel Wijkstra; Massimo Mischi
Journal:  Eur Radiol       Date:  2016-12-21       Impact factor: 5.315

5.  Data-driven identification of tumor subregions based on intravoxel incoherent motion reveals association with proliferative activity.

Authors:  Oscar Jalnefjord; Mikael Montelius; Jonathan Arvidsson; Eva Forssell-Aronsson; Göran Starck; Maria Ljungberg
Journal:  Magn Reson Med       Date:  2019-05-13       Impact factor: 4.668

6.  Uncertainty evaluation of image-based tumour control probability models in radiotherapy of prostate cancer using a visual analytic tool.

Authors:  Oscar Casares-Magaz; Renata G Raidou; Jarle Rørvik; Anna Vilanova; Ludvig P Muren
Journal:  Phys Imaging Radiat Oncol       Date:  2018-01-12

7.  Decoding Intratumoral Heterogeneity of Breast Cancer by Multiparametric In Vivo Imaging: A Translational Study.

Authors:  Jennifer Schmitz; Julian Schwab; Johannes Schwenck; Qian Chen; Leticia Quintanilla-Martinez; Markus Hahn; Beate Wietek; Nina Schwenzer; Annette Staebler; Ursula Kohlhofer; Olulanu H Aina; Neil E Hubbard; Gerald Reischl; Alexander D Borowsky; Sara Brucker; Konstantin Nikolaou; Christian la Fougère; Robert D Cardiff; Bernd J Pichler; Andreas M Schmid
Journal:  Cancer Res       Date:  2016-07-27       Impact factor: 12.701

8.  Delineation of Tumor Habitats based on Dynamic Contrast Enhanced MRI.

Authors:  Yu-Cherng Channing Chang; Ellen Ackerstaff; Yohann Tschudi; Bryan Jimenez; Warren Foltz; Carl Fisher; Lothar Lilge; HyungJoon Cho; Sean Carlin; Robert J Gillies; Yoganand Balagurunathan; Raphael L Yechieli; Ty Subhawong; Baris Turkbey; Alan Pollack; Radka Stoyanova
Journal:  Sci Rep       Date:  2017-08-29       Impact factor: 4.379

  8 in total

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