Literature DB >> 23439116

"Seq-ing" insights into the epigenetics of neuronal gene regulation.

Francesca Telese1, Amir Gamliel, Dorota Skowronska-Krawczyk, Ivan Garcia-Bassets, Michael G Rosenfeld.   

Abstract

The epigenetic control of neuronal gene expression patterns has emerged as an underlying regulatory mechanism for neuronal function, identity, and plasticity, in which short- to long-lasting adaptation is required to dynamically respond and process external stimuli. To achieve a comprehensive understanding of the physiology and pathology of the brain, it becomes essential to understand the mechanisms that regulate the epigenome and transcriptome in neurons. Here, we review recent advances in the study of regulated neuronal gene expression, which are dramatically expanding as a result of the development of new and powerful contemporary methodologies, based on next-generation sequencing. This flood of new information has already transformed our understanding of many biological processes and is now driving discoveries elucidating the molecular mechanisms of brain function in cognition, behavior, and disease and may also inform the study of neuronal identity, diversity, and neuronal reprogramming.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23439116      PMCID: PMC3736682          DOI: 10.1016/j.neuron.2013.01.034

Source DB:  PubMed          Journal:  Neuron        ISSN: 0896-6273            Impact factor:   17.173


  158 in total

1.  Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.

Authors:  Miao Yu; Gary C Hon; Keith E Szulwach; Chun-Xiao Song; Liang Zhang; Audrey Kim; Xuekun Li; Qing Dai; Yin Shen; Beomseok Park; Jung-Hyun Min; Peng Jin; Bing Ren; Chuan He
Journal:  Cell       Date:  2012-05-17       Impact factor: 41.582

2.  MicroRNA-mediated conversion of human fibroblasts to neurons.

Authors:  Andrew S Yoo; Alfred X Sun; Li Li; Aleksandr Shcheglovitov; Thomas Portmann; Yulong Li; Chris Lee-Messer; Ricardo E Dolmetsch; Richard W Tsien; Gerald R Crabtree
Journal:  Nature       Date:  2011-07-13       Impact factor: 49.962

Review 3.  Molecular mechanisms of long noncoding RNAs.

Authors:  Kevin C Wang; Howard Y Chang
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

4.  General transcription factor binding at CpG islands in normal cells correlates with resistance to de novo DNA methylation in cancer cells.

Authors:  Claudia Gebhard; Chris Benner; Mathias Ehrich; Lucia Schwarzfischer; Elmar Schilling; Maja Klug; Wolfgang Dietmaier; Christian Thiede; Ernst Holler; Reinhard Andreesen; Michael Rehli
Journal:  Cancer Res       Date:  2010-02-09       Impact factor: 12.701

Review 5.  Biogenesis and function of nuclear bodies.

Authors:  Yuntao S Mao; Bin Zhang; David L Spector
Journal:  Trends Genet       Date:  2011-06-15       Impact factor: 11.639

Review 6.  Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation.

Authors:  Hao Wu; Yi Zhang
Journal:  Genes Dev       Date:  2011-12-01       Impact factor: 11.361

Review 7.  MicroRNAs shape the neuronal landscape.

Authors:  Elizabeth McNeill; David Van Vactor
Journal:  Neuron       Date:  2012-08-09       Impact factor: 17.173

8.  Recovery of learning and memory is associated with chromatin remodelling.

Authors:  Andre Fischer; Farahnaz Sananbenesi; Xinyu Wang; Matthew Dobbin; Li-Huei Tsai
Journal:  Nature       Date:  2007-04-29       Impact factor: 49.962

9.  MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system.

Authors:  Marian Mellén; Pinar Ayata; Scott Dewell; Skirmantas Kriaucionis; Nathaniel Heintz
Journal:  Cell       Date:  2012-12-21       Impact factor: 41.582

10.  An expansive human regulatory lexicon encoded in transcription factor footprints.

Authors:  Shane Neph; Jeff Vierstra; Andrew B Stergachis; Alex P Reynolds; Eric Haugen; Benjamin Vernot; Robert E Thurman; Sam John; Richard Sandstrom; Audra K Johnson; Matthew T Maurano; Richard Humbert; Eric Rynes; Hao Wang; Shinny Vong; Kristen Lee; Daniel Bates; Morgan Diegel; Vaughn Roach; Douglas Dunn; Jun Neri; Anthony Schafer; R Scott Hansen; Tanya Kutyavin; Erika Giste; Molly Weaver; Theresa Canfield; Peter Sabo; Miaohua Zhang; Gayathri Balasundaram; Rachel Byron; Michael J MacCoss; Joshua M Akey; M A Bender; Mark Groudine; Rajinder Kaul; John A Stamatoyannopoulos
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

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  38 in total

Review 1.  Gene-Stress-Epigenetic Regulation of FKBP5: Clinical and Translational Implications.

Authors:  Anthony S Zannas; Tobias Wiechmann; Nils C Gassen; Elisabeth B Binder
Journal:  Neuropsychopharmacology       Date:  2015-08-13       Impact factor: 7.853

Review 2.  Vision from next generation sequencing: multi-dimensional genome-wide analysis for producing gene regulatory networks underlying retinal development, aging and disease.

Authors:  Hyun-Jin Yang; Rinki Ratnapriya; Tiziana Cogliati; Jung-Woong Kim; Anand Swaroop
Journal:  Prog Retin Eye Res       Date:  2015-02-07       Impact factor: 21.198

3.  End of inevitability: programming and reprogramming.

Authors:  Kursad Turksen
Journal:  Stem Cell Rev Rep       Date:  2013-08       Impact factor: 5.739

4.  Estrogen regulation of the brain renin-angiotensin system in protection against angiotensin II-induced sensitization of hypertension.

Authors:  Baojian Xue; Zhongming Zhang; Terry G Beltz; Fang Guo; Meredith Hay; Alan Kim Johnson
Journal:  Am J Physiol Heart Circ Physiol       Date:  2014-05-23       Impact factor: 4.733

5.  Marking cell-type-restricted enhancers before their activation.

Authors:  Dorota Skowronska-Krawczyk
Journal:  Cell Cycle       Date:  2018-08-10       Impact factor: 4.534

Review 6.  Histone variants and cellular plasticity.

Authors:  Stephen W Santoro; Catherine Dulac
Journal:  Trends Genet       Date:  2015-08-20       Impact factor: 11.639

7.  Global transcriptome profiling of genes that are differentially regulated during differentiation of mouse embryonic neural stem cells into astrocytes.

Authors:  Dalmuri Han; Mi Ran Choi; Kyoung Hwa Jung; Namshin Kim; Se Kye Kim; Jin Choul Chai; Young Seek Lee; Young Gyu Chai
Journal:  J Mol Neurosci       Date:  2014-08-08       Impact factor: 3.444

Review 8.  Epigenetic control of gene regulation during development and disease: A view from the retina.

Authors:  Ximena Corso-Díaz; Catherine Jaeger; Vijender Chaitankar; Anand Swaroop
Journal:  Prog Retin Eye Res       Date:  2018-03-12       Impact factor: 21.198

Review 9.  Epigenetic Etiology of Intellectual Disability.

Authors:  Shigeki Iwase; Nathalie G Bérubé; Zhaolan Zhou; Nael Nadif Kasri; Elena Battaglioli; Marilyn Scandaglia; Angel Barco
Journal:  J Neurosci       Date:  2017-11-08       Impact factor: 6.167

10.  Gene co-regulation by Fezf2 selects neurotransmitter identity and connectivity of corticospinal neurons.

Authors:  Simona Lodato; Bradley J Molyneaux; Emanuela Zuccaro; Loyal A Goff; Hsu-Hsin Chen; Wen Yuan; Alyssa Meleski; Emi Takahashi; Shaun Mahony; John L Rinn; David K Gifford; Paola Arlotta
Journal:  Nat Neurosci       Date:  2014-07-06       Impact factor: 24.884

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