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Literature DB >> 23438855

The Colossus of ubiquitylation: decrypting a cellular code.

Adam Williamson¹, Achim Werner, Michael Rape.

Abstract

Ubiquitylation is an essential posttranslational modification that can regulate the stability, activity, and localization of thousands of proteins. The reversible attachment of ubiquitin as well as interpretation of the ubiquitin signal depends on dynamic protein networks that are challenging to analyze. In this perspective, we discuss tools of the trade that have recently been developed to dissect mechanisms of ubiquitin-dependent signaling, thereby revealing the critical features of an important cellular code.

Entities: Chemical Disease Gene Species

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Year: 2013 PMID： 23438855 PMCID： PMC3589588 DOI： 10.1016/j.molcel.2013.01.028

Source DB: PubMed Journal: Mol Cell ISSN： 1097-2765 Impact factor: 17.970

110 in total

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Authors: Jan-Michael Peters
Journal: Nat Rev Mol Cell Biol Date: 2006-08-09 Impact factor: 94.444

2. Quantitative analysis of in vitro ubiquitinated cyclin B1 reveals complex chain topology.

Authors: Donald S Kirkpatrick; Nathaniel A Hathaway; John Hanna; Suzanne Elsasser; John Rush; Daniel Finley; Randall W King; Steven P Gygi
Journal: Nat Cell Biol Date: 2006-06-25 Impact factor: 28.824

3. A tandem affinity tag for two-step purification under fully denaturing conditions: application in ubiquitin profiling and protein complex identification combined with in vivocross-linking.

Authors: Christian Tagwerker; Karin Flick; Meng Cui; Cortnie Guerrero; Yimeng Dou; Bernhard Auer; Pierre Baldi; Lan Huang; Peter Kaiser
Journal: Mol Cell Proteomics Date: 2006-01-23 Impact factor: 5.911

4. Sequential E2s drive polyubiquitin chain assembly on APC targets.

Authors: Monica C Rodrigo-Brenni; David O Morgan
Journal: Cell Date: 2007-07-13 Impact factor: 41.582

5. Mechanism of auxin perception by the TIR1 ubiquitin ligase.

Authors: Xu Tan; Luz Irina A Calderon-Villalobos; Michal Sharon; Changxue Zheng; Carol V Robinson; Mark Estelle; Ning Zheng
Journal: Nature Date: 2007-04-05 Impact factor: 49.962

6. Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH.

Authors: Michael J Eddins; Ranjani Varadan; David Fushman; Cecile M Pickart; Cynthia Wolberger
Journal: J Mol Biol Date: 2006-12-29 Impact factor: 5.469

7. S6K1- and betaTRCP-mediated degradation of PDCD4 promotes protein translation and cell growth.

Authors: N Valerio Dorrello; Angelo Peschiaroli; Daniele Guardavaccaro; Nancy H Colburn; Nicholas E Sherman; Michele Pagano
Journal: Science Date: 2006-10-20 Impact factor: 47.728

8. Anaphase initiation is regulated by antagonistic ubiquitination and deubiquitination activities.

Authors: Frank Stegmeier; Michael Rape; Viji M Draviam; Grzegorz Nalepa; Mathew E Sowa; Xiaolu L Ang; E Robert McDonald; Mamie Z Li; Gregory J Hannon; Peter K Sorger; Marc W Kirschner; J Wade Harper; Stephen J Elledge
Journal: Nature Date: 2007-04-19 Impact factor: 49.962

9. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes.

Authors: Philippe Lamesch; Ning Li; Stuart Milstein; Changyu Fan; Tong Hao; Gabor Szabo; Zhenjun Hu; Kavitha Venkatesan; Graeme Bethel; Paul Martin; Jane Rogers; Stephanie Lawlor; Stuart McLaren; Amélie Dricot; Heather Borick; Michael E Cusick; Jean Vandenhaute; Ian Dunham; David E Hill; Marc Vidal
Journal: Genomics Date: 2007-01-05 Impact factor: 5.736

10. Control of chromosome stability by the beta-TrCP-REST-Mad2 axis.

Authors: Daniele Guardavaccaro; David Frescas; N Valerio Dorrello; Angelo Peschiaroli; Asha S Multani; Timothy Cardozo; Anna Lasorella; Antonio Iavarone; Sandy Chang; Eva Hernando; Michele Pagano
Journal: Nature Date: 2008-03-20 Impact factor: 49.962

21 in total

1. Using the ubiquitin-modified proteome to monitor protein homeostasis function.

Authors: Andrea C Carrano; Eric J Bennett
Journal: Mol Cell Proteomics Date: 2013-05-23 Impact factor: 5.911

Review 2. Understanding the structural basis for controlling chromosome division.

Authors: David Barford
Journal: Philos Trans A Math Phys Eng Sci Date: 2015-03-06 Impact factor: 4.226

3. Cullin' PLK1 from kinetochores.

Authors: Colleen A McGourty; Michael Rape
Journal: Nat Cell Biol Date: 2013-04 Impact factor: 28.824

4. Flexibility in crosstalk between H2B ubiquitination and H3 methylation in vivo.

Authors: Hanneke Vlaming; Tibor van Welsem; Erik L de Graaf; David Ontoso; A F Maarten Altelaar; Pedro A San-Segundo; Albert J R Heck; Fred van Leeuwen
Journal: EMBO Rep Date: 2014-08-20 Impact factor: 8.807

5. Quantitative Lys-ϵ-Gly-Gly (diGly) proteomics coupled with inducible RNAi reveals ubiquitin-mediated proteolysis of DNA damage-inducible transcript 4 (DDIT4) by the E3 ligase HUWE1.

Authors: Joel W Thompson; Jane Nagel; Sjouke Hoving; Bertran Gerrits; Andreas Bauer; Jason R Thomas; Marc W Kirschner; Markus Schirle; Sarah J Luchansky
Journal: J Biol Chem Date: 2014-08-21 Impact factor: 5.157

Review 6. Post-translational modification profiling - A novel tool for mapping the protein modification landscape in cancer.

Authors: Avital Eisenberg-Lerner; Aaron Ciechanover; Yifat Merbl
Journal: Exp Biol Med (Maywood) Date: 2016-05-26