Literature DB >> 23430196

The proof of concept that culturomics can be superior to metagenomics to study atypical stool samples.

G Dubourg, J C Lagier, F Armougom, C Robert, I Hamad, P Brouqui, D Raoult.   

Abstract

Mesh：

Year:  2013        PMID： 23430196     DOI： 10.1007/s10096-013-1843-7

Source DB:  PubMed          Journal:  Eur J Clin Microbiol Infect Dis        ISSN： 0934-9723            Impact factor:   3.267


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  7 in total

Review 1.  Axenic culture of fastidious and intracellular bacteria.

Authors:  Sudhir Singh; Carole Eldin; Malgorzata Kowalczewska; Didier Raoult
Journal:  Trends Microbiol       Date:  2012-11-23       Impact factor: 17.079

2.  Microbial culturomics: paradigm shift in the human gut microbiome study.

Authors:  J-C Lagier; F Armougom; M Million; P Hugon; I Pagnier; C Robert; F Bittar; G Fournous; G Gimenez; M Maraninchi; J-F Trape; E V Koonin; B La Scola; D Raoult
Journal:  Clin Microbiol Infect       Date:  2012-10-03       Impact factor: 8.067

3.  The gut microbiota of a patient with resistant tuberculosis is more comprehensively studied by culturomics than by metagenomics.

Authors:  G Dubourg; J C Lagier; F Armougom; C Robert; I Hamad; P Brouqui; D Raoult
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2013-01-06       Impact factor: 3.267

4.  Effects of polymerase, template dilution and cycle number on PCR based 16 S rRNA diversity analysis using the deep sequencing method.

Authors:  Jin-Ya Wu; Xiao-Tao Jiang; Yun-Xia Jiang; Su-Ying Lu; Fei Zou; Hong-Wei Zhou
Journal:  BMC Microbiol       Date:  2010-10-12       Impact factor: 3.605

5.  Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions.

Authors:  Marcus J Claesson; Qiong Wang; Orla O'Sullivan; Rachel Greene-Diniz; James R Cole; R Paul Ross; Paul W O'Toole
Journal:  Nucleic Acids Res       Date:  2010-09-29       Impact factor: 16.971

6.  PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets.

Authors:  Ameet J Pinto; Lutgarde Raskin
Journal:  PLoS One       Date:  2012-08-15       Impact factor: 3.240

Review 7.  Human gut microbiota: repertoire and variations.

Authors:  Jean-Christophe Lagier; Matthieu Million; Perrine Hugon; Fabrice Armougom; Didier Raoult
Journal:  Front Cell Infect Microbiol       Date:  2012-11-02       Impact factor: 5.293
  7 in total
  7 in total

1.  Culturomics identified 11 new bacterial species from a single anorexia nervosa stool sample.

Authors:  A Pfleiderer; J-C Lagier; F Armougom; C Robert; B Vialettes; D Raoult
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2013-06-02       Impact factor: 3.267

2.  Topical Decolonization Does Not Eradicate the Skin Microbiota of Community-Dwelling or Hospitalized Adults.

Authors:  C A Burnham; Patrick G Hogan; Meghan A Wallace; Elena Deych; William Shannon; David K Warren; Stephanie A Fritz
Journal:  Antimicrob Agents Chemother       Date:  2016-11-21       Impact factor: 5.191

Review 3.  Consolidation of Clinical Microbiology Laboratories and Introduction of Transformative Technologies.

Authors:  Zisis Kozlakidis; Alex van Belkum; Olivier Vandenberg; Géraldine Durand; Marie Hallin; Andreas Diefenbach; Vanya Gant; Patrick Murray
Journal:  Clin Microbiol Rev       Date:  2020-02-26       Impact factor: 26.132

Review 4.  Metagenomics for pathogen detection in public health.

Authors:  Ruth R Miller; Vincent Montoya; Jennifer L Gardy; David M Patrick; Patrick Tang
Journal:  Genome Med       Date:  2013-09-20       Impact factor: 11.117

5.  Extensive culturomics of 8 healthy samples enhances metagenomics efficiency.

Authors:  Ami Diakite; Grégory Dubourg; Niokhor Dione; Pamela Afouda; Sara Bellali; Issa Isaac Ngom; Camille Valles; Matthieu Million; Anthony Levasseur; Frédéric Cadoret; Jean-Christophe Lagier; Didier Raoult
Journal:  PLoS One       Date:  2019-10-21       Impact factor: 3.240

6.  The species-level microbiota of healthy eyes revealed by the integration of metataxonomics with culturomics and genome analysis.

Authors:  Kui Dong; Ji Pu; Jing Yang; Guohong Zhou; Xuan Ji; Zhiming Kang; Juan Li; Min Yuan; Xiaoling Ning; Zhaoxia Zhang; XingYu Ma; Yanpeng Cheng; Hong Li; Qin Ma; Hong Li; Lijun Zhao; Wenjing Lei; Bin Sun; Jianguo Xu
Journal:  Front Microbiol       Date:  2022-09-02       Impact factor: 6.064

7.  Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing.

Authors:  Morgane Mailhe; Davide Ricaboni; Véronique Vitton; Jean-Michel Gonzalez; Dipankar Bachar; Grégory Dubourg; Frédéric Cadoret; Catherine Robert; Jérémy Delerce; Anthony Levasseur; Pierre-Edouard Fournier; Emmanouil Angelakis; Jean-Christophe Lagier; Didier Raoult
Journal:  BMC Microbiol       Date:  2018-10-24       Impact factor: 3.605
  7 in total

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