Literature DB >> 23424480

5-Benzoyl-4-(4-fluoro-phen-yl)-3,4-dihydro-pyrimidin-2(1H)-one.

Rajni Kant1, Vivek K Gupta, Kamini Kapoor, D R Patil, Madhukar B Deshmukh.   

Abstract

In the title mol-ecule, C(17)H(13)FN(2)O(2), the 3,4-dihydro-pyrimidine ring adopts a flattened sofa conformation with the flap atom (which bears the fluoro-phenyl substituent) deviating from the plane defined by the remaining five ring atoms by 0.281 (2) Å. This plane forms dihedral angles of 85.98 (6) and 60.63 (6)° with the 4-fluoro-phenyl and benzoyl-phenyl rings, respectively. The dihedral angle between the 4-fluoro-phenyl group and the benzene ring is 71.78 (6)°. In the crystal, N-H⋯O hydrogen bonds link mol-ecules into inversion dimers that are further connected by another N-H⋯O inter-action into a two-dimensional supra-molecular structure parallel to (101).

Entities:  

Year:  2013        PMID: 23424480      PMCID: PMC3569257          DOI: 10.1107/S1600536812052105

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and pharmaceutical applications of pyrimidino­nes, see: Ghorab et al. (2000 ▶); Shivarama Holla et al. (2004 ▶); Stefani et al. (2006 ▶). For related structures, see: Fun et al. (2009 ▶); Chitra et al. (2009 ▶). For asymmetry parameters, see: Duax & Norton (1975 ▶).

Experimental

Crystal data

C17H13FN2O2 M = 296.29 Monoclinic, a = 12.7911 (5) Å b = 8.1862 (3) Å c = 13.7325 (5) Å β = 98.850 (4)° V = 1420.82 (9) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.3 × 0.2 × 0.2 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.777, T max = 1.000 27552 measured reflections 2786 independent reflections 1836 reflections with I > 2σ(I) R int = 0.075

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.131 S = 1.04 2786 reflections 199 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.14 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2010 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812052105/gk2549sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812052105/gk2549Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812052105/gk2549Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H13FN2O2F(000) = 616
Mr = 296.29Dx = 1.385 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 9924 reflections
a = 12.7911 (5) Åθ = 3.4–29.0°
b = 8.1862 (3) ŵ = 0.10 mm1
c = 13.7325 (5) ÅT = 293 K
β = 98.850 (4)°Block, colourless
V = 1420.82 (9) Å30.3 × 0.2 × 0.2 mm
Z = 4
Oxford Diffraction Xcalibur Sapphire3 diffractometer2786 independent reflections
Radiation source: fine-focus sealed tube1836 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.075
Detector resolution: 16.1049 pixels mm-1θmax = 26.0°, θmin = 3.4°
ω scansh = −15→15
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −10→10
Tmin = 0.777, Tmax = 1.000l = −16→16
27552 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0593P)2 + 0.117P] where P = (Fo2 + 2Fc2)/3
2786 reflections(Δ/σ)max = 0.001
199 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.14 e Å3
Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.34.40 Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.39760 (11)0.04963 (17)0.86034 (11)0.0532 (4)
O20.37270 (12)0.57074 (18)0.52393 (11)0.0584 (5)
F10.33786 (14)0.71433 (18)1.06679 (11)0.0932 (5)
N10.48454 (13)0.3865 (2)0.60718 (13)0.0497 (5)
H10.53520.41890.57740.060*
C20.38882 (16)0.4658 (2)0.58943 (15)0.0428 (5)
N30.31734 (13)0.42049 (19)0.64458 (12)0.0436 (4)
H30.25390.45560.62670.052*
C40.33496 (15)0.3167 (2)0.73290 (14)0.0386 (5)
H40.27460.24220.72990.046*
C50.43279 (15)0.2146 (2)0.72997 (14)0.0383 (5)
C60.50143 (16)0.2583 (2)0.67049 (15)0.0429 (5)
H60.56350.19830.67250.051*
C70.45121 (15)0.0738 (2)0.79487 (15)0.0401 (5)
C80.53687 (15)−0.0452 (2)0.78012 (15)0.0406 (5)
C90.54036 (17)−0.1174 (2)0.68944 (16)0.0506 (6)
H90.4915−0.08670.63520.061*
C100.61561 (19)−0.2345 (3)0.67854 (19)0.0603 (6)
H100.6164−0.28360.61760.072*
C110.6889 (2)−0.2778 (3)0.7576 (2)0.0674 (7)
H110.7398−0.35620.75030.081*
C120.68740 (19)−0.2060 (3)0.8473 (2)0.0642 (7)
H120.7382−0.23480.90050.077*
C130.61117 (18)−0.0912 (2)0.85984 (17)0.0502 (6)
H130.6098−0.04500.92150.060*
C140.33820 (15)0.4208 (2)0.82489 (14)0.0374 (5)
C150.41687 (18)0.5364 (3)0.85035 (16)0.0507 (6)
H150.47040.54740.81200.061*
C160.4170 (2)0.6356 (3)0.93181 (17)0.0598 (6)
H160.46980.71310.94850.072*
C170.3384 (2)0.6174 (3)0.98687 (17)0.0578 (6)
C180.2588 (2)0.5067 (3)0.96424 (17)0.0582 (6)
H180.20490.49861.00240.070*
C190.26005 (17)0.4065 (2)0.88326 (16)0.0480 (5)
H190.20730.32830.86800.058*
U11U22U33U12U13U23
O10.0473 (9)0.0574 (9)0.0592 (9)0.0000 (7)0.0219 (8)0.0136 (7)
O20.0593 (10)0.0675 (10)0.0529 (9)0.0202 (8)0.0223 (8)0.0227 (8)
F10.1272 (14)0.0846 (10)0.0730 (10)−0.0053 (10)0.0323 (10)−0.0299 (8)
N10.0388 (10)0.0546 (10)0.0600 (11)0.0094 (8)0.0215 (9)0.0197 (9)
C20.0419 (12)0.0473 (12)0.0407 (11)0.0065 (9)0.0113 (9)0.0021 (10)
N30.0329 (9)0.0572 (10)0.0415 (9)0.0100 (8)0.0084 (8)0.0092 (8)
C40.0318 (11)0.0403 (10)0.0454 (11)0.0005 (8)0.0114 (9)0.0059 (9)
C50.0333 (11)0.0390 (10)0.0434 (11)0.0007 (8)0.0085 (9)0.0023 (9)
C60.0356 (11)0.0436 (11)0.0510 (12)0.0056 (9)0.0113 (10)0.0075 (9)
C70.0352 (11)0.0398 (10)0.0457 (12)−0.0046 (9)0.0076 (9)0.0013 (9)
C80.0356 (11)0.0356 (10)0.0518 (12)−0.0036 (9)0.0104 (9)0.0043 (9)
C90.0443 (13)0.0534 (13)0.0539 (14)−0.0003 (10)0.0068 (11)−0.0008 (10)
C100.0544 (15)0.0568 (14)0.0713 (17)0.0000 (12)0.0145 (13)−0.0135 (12)
C110.0524 (16)0.0509 (14)0.099 (2)0.0110 (11)0.0109 (15)−0.0053 (14)
C120.0471 (15)0.0578 (14)0.0825 (18)0.0111 (12)−0.0063 (13)0.0104 (13)
C130.0499 (14)0.0440 (12)0.0548 (13)−0.0032 (10)0.0022 (11)0.0048 (10)
C140.0361 (11)0.0353 (10)0.0418 (11)0.0028 (9)0.0089 (9)0.0067 (8)
C150.0477 (14)0.0549 (13)0.0522 (13)−0.0060 (10)0.0160 (11)0.0003 (10)
C160.0679 (17)0.0523 (13)0.0589 (14)−0.0110 (12)0.0091 (13)−0.0048 (12)
C170.0790 (18)0.0484 (13)0.0480 (13)0.0049 (12)0.0159 (12)−0.0062 (11)
C180.0688 (17)0.0569 (14)0.0566 (14)0.0052 (12)0.0346 (13)0.0029 (12)
C190.0468 (13)0.0436 (12)0.0571 (13)−0.0019 (9)0.0190 (11)0.0030 (10)
O1—C71.228 (2)C9—H90.9300
O2—C21.238 (2)C10—C111.367 (3)
F1—C171.355 (2)C10—H100.9300
N1—C61.359 (2)C11—C121.369 (3)
N1—C21.374 (3)C11—H110.9300
N1—H10.8600C12—C131.384 (3)
C2—N31.327 (2)C12—H120.9300
N3—C41.470 (2)C13—H130.9300
N3—H30.8600C14—C191.379 (3)
C4—C51.511 (3)C14—C151.387 (3)
C4—C141.519 (3)C15—C161.382 (3)
C4—H40.9800C15—H150.9300
C5—C61.337 (3)C16—C171.356 (3)
C5—C71.454 (3)C16—H160.9300
C6—H60.9300C17—C181.362 (3)
C7—C81.503 (3)C18—C191.384 (3)
C8—C91.385 (3)C18—H180.9300
C8—C131.387 (3)C19—H190.9300
C9—C101.383 (3)
C6—N1—C2121.89 (17)C11—C10—C9119.9 (2)
C6—N1—H1119.1C11—C10—H10120.1
C2—N1—H1119.1C9—C10—H10120.1
O2—C2—N3123.82 (18)C10—C11—C12120.0 (2)
O2—C2—N1120.08 (18)C10—C11—H11120.0
N3—C2—N1116.09 (17)C12—C11—H11120.0
C2—N3—C4126.95 (16)C11—C12—C13120.7 (2)
C2—N3—H3116.5C11—C12—H12119.6
C4—N3—H3116.5C13—C12—H12119.6
N3—C4—C5108.69 (15)C12—C13—C8119.8 (2)
N3—C4—C14110.09 (14)C12—C13—H13120.1
C5—C4—C14114.58 (16)C8—C13—H13120.1
N3—C4—H4107.7C19—C14—C15118.29 (19)
C5—C4—H4107.7C19—C14—C4120.43 (18)
C14—C4—H4107.7C15—C14—C4121.23 (17)
C6—C5—C7121.81 (17)C16—C15—C14121.0 (2)
C6—C5—C4119.51 (17)C16—C15—H15119.5
C7—C5—C4118.64 (16)C14—C15—H15119.5
C5—C6—N1122.90 (18)C17—C16—C15118.6 (2)
C5—C6—H6118.6C17—C16—H16120.7
N1—C6—H6118.6C15—C16—H16120.7
O1—C7—C5121.36 (17)F1—C17—C16118.9 (2)
O1—C7—C8119.69 (17)F1—C17—C18118.5 (2)
C5—C7—C8118.95 (17)C16—C17—C18122.5 (2)
C9—C8—C13118.75 (19)C17—C18—C19118.5 (2)
C9—C8—C7121.50 (19)C17—C18—H18120.7
C13—C8—C7119.67 (19)C19—C18—H18120.7
C10—C9—C8120.8 (2)C14—C19—C18121.0 (2)
C10—C9—H9119.6C14—C19—H19119.5
C8—C9—H9119.6C18—C19—H19119.5
C6—N1—C2—O2−172.51 (19)C7—C8—C9—C10−175.79 (18)
C6—N1—C2—N36.3 (3)C8—C9—C10—C11−1.2 (3)
O2—C2—N3—C4−169.86 (18)C9—C10—C11—C120.3 (4)
N1—C2—N3—C411.4 (3)C10—C11—C12—C131.1 (4)
C2—N3—C4—C5−22.5 (3)C11—C12—C13—C8−1.5 (3)
C2—N3—C4—C14103.8 (2)C9—C8—C13—C120.6 (3)
N3—C4—C5—C617.7 (3)C7—C8—C13—C12177.22 (19)
C14—C4—C5—C6−105.9 (2)N3—C4—C14—C19113.42 (19)
N3—C4—C5—C7−164.33 (16)C5—C4—C14—C19−123.7 (2)
C14—C4—C5—C772.1 (2)N3—C4—C14—C15−64.1 (2)
C7—C5—C6—N1178.06 (18)C5—C4—C14—C1558.8 (2)
C4—C5—C6—N1−4.0 (3)C19—C14—C15—C16−0.3 (3)
C2—N1—C6—C5−9.6 (3)C4—C14—C15—C16177.24 (19)
C6—C5—C7—O1167.94 (19)C14—C15—C16—C170.1 (3)
C4—C5—C7—O1−10.0 (3)C15—C16—C17—F1−179.9 (2)
C6—C5—C7—C8−12.9 (3)C15—C16—C17—C18−0.8 (4)
C4—C5—C7—C8169.22 (17)F1—C17—C18—C19−179.3 (2)
O1—C7—C8—C9125.5 (2)C16—C17—C18—C191.6 (4)
C5—C7—C8—C9−53.7 (2)C15—C14—C19—C181.1 (3)
O1—C7—C8—C13−51.0 (3)C4—C14—C19—C18−176.45 (18)
C5—C7—C8—C13129.8 (2)C17—C18—C19—C14−1.7 (3)
C13—C8—C9—C100.7 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.861.962.777 (2)159
N3—H3···O1ii0.862.122.937 (2)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O2i 0.861.962.777 (2)159
N3—H3⋯O1ii 0.862.122.937 (2)159

Symmetry codes: (i) ; (ii) .

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