Literature DB >> 21581666

5-Acetyl-4-(4-methoxy-phen-yl)-6-methyl-3,4-dihydro-pyrimidin-2(1H)-one.

S Chitra, K Pandiarajan, N Anuradha, A Thiruvalluvar.   

Abstract

In the title mol-ecule, C(14)H(16)N(2)O(3), the heterocyclic ring adopts a flattened boat conformation, and the plane through its four coplanar atoms makes a dihedral angle of 89.65 (7)° with the benzene ring. The non-H atoms of the carbonyl, acetyl and methyl groups are nearly coplanar with the attached heterocyclic ring. Inter-molecular N-H⋯O and C-H⋯O hydrogen bonds are present in the crystal structure.

Entities:  

Year:  2008        PMID: 21581666      PMCID: PMC2967942          DOI: 10.1107/S1600536808040270

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For chemical and medicinal background, see: Atwal et al. (1989 ▶); Ghorab et al. (2000 ▶); Kappe (1993 ▶, 2000 ▶); Kappe et al. (1997 ▶, 2000 ▶); Shivarama Holla et al. (2004 ▶); Stefani et al. (2006 ▶).

Experimental

Crystal data

C14H16N2O3 M = 260.29 Monoclinic, a = 23.7948 (12) Å b = 7.9905 (3) Å c = 14.4757 (7) Å β = 108.305 (5)° V = 2613.0 (2) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 293 (2) K 0.3 × 0.2 × 0.2 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.837, T max = 1.000 (expected range = 0.821–0.981) 26518 measured reflections 2960 independent reflections 2226 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.149 S = 1.10 2960 reflections 183 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-NT (Bruker, 2004 ▶); data reduction: SAINT-NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808040270/hb2869sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808040270/hb2869Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H16N2O3F(000) = 1104
Mr = 260.29Dx = 1.323 Mg m3
Monoclinic, C2/cMelting point: 474.5 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 23.7948 (12) ÅCell parameters from 5096 reflections
b = 7.9905 (3) Åθ = 2.7–26.4°
c = 14.4757 (7) ŵ = 0.09 mm1
β = 108.305 (5)°T = 293 K
V = 2613.0 (2) Å3Block, colourless
Z = 80.3 × 0.2 × 0.2 mm
Bruker Kappa APEXII CCD diffractometer2960 independent reflections
Radiation source: fine-focus sealed tube2226 reflections with I > 2σ(I)
graphiteRint = 0.045
ω and φ scansθmax = 27.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −30→30
Tmin = 0.837, Tmax = 1.000k = −10→10
26518 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.149H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.0771P)2 + 1.0144P] where P = (Fo2 + 2Fc2)/3
2960 reflections(Δ/σ)max = 0.001
183 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O20.03463 (6)0.62339 (16)−0.06612 (9)0.0448 (4)
O150.06948 (6)0.98745 (15)0.31847 (8)0.0430 (4)
O440.27417 (7)0.4726 (2)0.44596 (12)0.0748 (6)
N10.07453 (7)0.86574 (18)0.00570 (10)0.0358 (4)
N30.04449 (7)0.66399 (18)0.09271 (10)0.0351 (4)
C20.05037 (7)0.7104 (2)0.00812 (11)0.0319 (5)
C40.06651 (7)0.75657 (19)0.18405 (11)0.0297 (4)
C50.07616 (7)0.93953 (19)0.16471 (11)0.0294 (5)
C60.08211 (7)0.98438 (19)0.07810 (11)0.0303 (5)
C140.27926 (12)0.4564 (4)0.54607 (19)0.0879 (11)
C150.07743 (7)1.0494 (2)0.24592 (11)0.0332 (5)
C160.08710 (11)1.2339 (2)0.24595 (14)0.0558 (7)
C410.12158 (7)0.67712 (19)0.25352 (11)0.0320 (5)
C420.17355 (9)0.6594 (3)0.23045 (14)0.0514 (7)
C430.22307 (10)0.5896 (3)0.29545 (17)0.0624 (8)
C440.22238 (9)0.5391 (3)0.38624 (14)0.0493 (6)
C450.17137 (9)0.5551 (2)0.41034 (13)0.0436 (6)
C460.12122 (8)0.6231 (2)0.34341 (12)0.0362 (5)
C610.09756 (9)1.1526 (2)0.04681 (13)0.0424 (6)
H10.0736 (9)0.901 (3)−0.0548 (16)0.048 (6)*
H30.0231 (9)0.572 (3)0.0913 (14)0.046 (6)*
H40.035590.752560.215530.0356*
H14A0.272760.563250.571240.1316*
H14B0.318180.416850.581480.1316*
H14C0.250290.378000.553090.1316*
H16A0.083241.281400.304560.0837*
H16B0.058211.282960.190640.0837*
H16C0.126081.256010.242650.0837*
H420.174930.695340.170100.0616*
H430.257280.576300.278120.0749*
H450.170300.520540.471120.0523*
H460.086580.632270.359880.0434*
H61A0.065701.229430.041720.0636*
H61B0.103881.14266−0.015280.0636*
H61C0.132991.193460.093970.0636*
U11U22U33U12U13U23
O20.0622 (9)0.0433 (7)0.0320 (7)−0.0143 (6)0.0191 (6)−0.0122 (5)
O150.0643 (9)0.0401 (7)0.0261 (6)0.0044 (6)0.0164 (6)−0.0015 (5)
O440.0478 (9)0.0956 (13)0.0681 (11)0.0106 (9)−0.0003 (8)0.0305 (10)
N10.0501 (9)0.0354 (7)0.0249 (7)−0.0069 (6)0.0160 (6)−0.0019 (6)
N30.0469 (9)0.0314 (7)0.0264 (7)−0.0105 (6)0.0108 (6)−0.0029 (5)
C20.0358 (9)0.0334 (8)0.0263 (8)−0.0038 (7)0.0094 (7)−0.0037 (6)
C40.0380 (9)0.0294 (7)0.0233 (7)−0.0033 (6)0.0119 (7)−0.0004 (6)
C50.0339 (9)0.0279 (7)0.0251 (8)0.0007 (6)0.0074 (6)0.0002 (6)
C60.0331 (9)0.0297 (8)0.0266 (8)0.0002 (6)0.0074 (6)−0.0003 (6)
C140.0716 (18)0.102 (2)0.0639 (17)−0.0019 (16)−0.0163 (13)0.0314 (15)
C150.0388 (9)0.0335 (8)0.0240 (8)0.0044 (7)0.0051 (7)−0.0013 (6)
C160.0959 (18)0.0337 (9)0.0369 (10)−0.0012 (10)0.0196 (11)−0.0053 (8)
C410.0396 (9)0.0275 (7)0.0288 (8)−0.0036 (7)0.0108 (7)−0.0002 (6)
C420.0474 (12)0.0697 (13)0.0400 (10)0.0058 (10)0.0181 (9)0.0166 (9)
C430.0406 (12)0.0861 (17)0.0623 (14)0.0084 (11)0.0188 (10)0.0201 (12)
C440.0436 (11)0.0487 (11)0.0469 (11)0.0012 (9)0.0017 (9)0.0111 (9)
C450.0548 (12)0.0399 (9)0.0329 (9)0.0014 (9)0.0090 (8)0.0082 (8)
C460.0454 (10)0.0330 (8)0.0314 (9)0.0005 (7)0.0139 (7)0.0022 (7)
C610.0613 (12)0.0324 (8)0.0360 (9)−0.0030 (8)0.0188 (9)0.0029 (7)
O2—C21.235 (2)C42—C431.374 (3)
O15—C151.228 (2)C43—C441.380 (3)
O44—C141.422 (3)C44—C451.370 (3)
O44—C441.371 (3)C45—C461.390 (3)
N1—C21.373 (2)C4—H40.9800
N1—C61.382 (2)C14—H14A0.9600
N3—C21.328 (2)C14—H14B0.9600
N3—C41.461 (2)C14—H14C0.9600
N1—H10.91 (2)C16—H16A0.9600
N3—H30.89 (2)C16—H16B0.9600
C4—C411.518 (2)C16—H16C0.9600
C4—C51.520 (2)C42—H420.9300
C5—C61.354 (2)C43—H430.9300
C5—C151.460 (2)C45—H450.9300
C6—C611.501 (2)C46—H460.9300
C15—C161.492 (2)C61—H61A0.9600
C41—C461.374 (2)C61—H61B0.9600
C41—C421.386 (3)C61—H61C0.9600
C14—O44—C44116.75 (19)C41—C46—C45121.59 (18)
C2—N1—C6123.82 (14)N3—C4—H4107.00
C2—N3—C4125.54 (14)C5—C4—H4107.00
C2—N1—H1114.8 (15)C41—C4—H4107.00
C6—N1—H1118.3 (15)O44—C14—H14A109.00
C2—N3—H3115.7 (13)O44—C14—H14B109.00
C4—N3—H3118.6 (13)O44—C14—H14C109.00
O2—C2—N3123.64 (16)H14A—C14—H14B109.00
N1—C2—N3116.24 (14)H14A—C14—H14C109.00
O2—C2—N1120.11 (15)H14B—C14—H14C109.00
N3—C4—C5110.63 (13)C15—C16—H16A109.00
N3—C4—C41112.17 (13)C15—C16—H16B109.00
C5—C4—C41112.06 (13)C15—C16—H16C109.00
C4—C5—C15113.35 (13)H16A—C16—H16B109.00
C6—C5—C15127.23 (14)H16A—C16—H16C109.00
C4—C5—C6119.42 (14)H16B—C16—H16C109.00
N1—C6—C5119.61 (14)C41—C42—H42119.00
N1—C6—C61111.81 (14)C43—C42—H42120.00
C5—C6—C61128.58 (14)C42—C43—H43120.00
C5—C15—C16123.96 (15)C44—C43—H43120.00
O15—C15—C5118.45 (14)C44—C45—H45120.00
O15—C15—C16117.59 (15)C46—C45—H45120.00
C4—C41—C46119.88 (16)C41—C46—H46119.00
C42—C41—C46117.89 (16)C45—C46—H46119.00
C4—C41—C42122.22 (15)C6—C61—H61A109.00
C41—C42—C43120.97 (19)C6—C61—H61B109.00
C42—C43—C44120.4 (2)C6—C61—H61C109.00
O44—C44—C43115.9 (2)H61A—C61—H61B109.00
C43—C44—C45119.5 (2)H61A—C61—H61C109.00
O44—C44—C45124.64 (18)H61B—C61—H61C109.00
C44—C45—C46119.62 (17)
C14—O44—C44—C43165.7 (2)C4—C5—C6—N15.3 (3)
C14—O44—C44—C45−15.5 (3)C4—C5—C6—C61−173.60 (17)
C6—N1—C2—O2166.26 (17)C15—C5—C6—N1−174.25 (17)
C6—N1—C2—N3−12.6 (3)C15—C5—C6—C616.9 (3)
C2—N1—C6—C512.8 (3)C4—C5—C15—O15−1.7 (2)
C2—N1—C6—C61−168.20 (17)C4—C5—C15—C16179.10 (18)
C4—N3—C2—O2174.99 (17)C6—C5—C15—O15177.84 (18)
C4—N3—C2—N1−6.2 (3)C6—C5—C15—C16−1.4 (3)
C2—N3—C4—C521.4 (2)C4—C41—C42—C43178.86 (19)
C2—N3—C4—C41−104.54 (19)C46—C41—C42—C430.2 (3)
N3—C4—C5—C6−20.2 (2)C4—C41—C46—C45−177.71 (15)
N3—C4—C5—C15159.41 (15)C42—C41—C46—C451.0 (3)
C41—C4—C5—C6105.84 (17)C41—C42—C43—C44−1.5 (4)
C41—C4—C5—C15−74.59 (18)C42—C43—C44—O44−179.4 (2)
N3—C4—C41—C4261.2 (2)C42—C43—C44—C451.7 (3)
N3—C4—C41—C46−120.13 (16)O44—C44—C45—C46−179.37 (19)
C5—C4—C41—C42−64.0 (2)C43—C44—C45—C46−0.5 (3)
C5—C4—C41—C46114.72 (17)C44—C45—C46—C41−0.9 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O15i0.91 (2)2.01 (2)2.9209 (18)172 (2)
N3—H3···O2ii0.89 (2)2.04 (2)2.917 (2)170.3 (19)
C16—H16B···O2iii0.962.493.425 (3)165
C61—H61B···O15i0.962.513.352 (2)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O15i0.91 (2)2.01 (2)2.9209 (18)172 (2)
N3—H3⋯O2ii0.89 (2)2.04 (2)2.917 (2)170.3 (19)
C16—H16B⋯O2iii0.962.493.425 (3)165
C61—H61B⋯O15i0.962.513.352 (2)146

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  One pot synthesis of thiazolodihydropyrimidinones and evaluation of their anticancer activity.

Authors:  B Shivarama Holla; B Sooryanarayana Rao; B K Sarojini; P M Akberali
Journal:  Eur J Med Chem       Date:  2004-09       Impact factor: 6.514

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Biologically active dihydropyrimidones of the Biginelli-type--a literature survey.

Authors:  C O Kappe
Journal:  Eur J Med Chem       Date:  2000-12       Impact factor: 6.514

4.  Synthesis and evaluation of some new fluorinated hydroquinazoline derivatives as antifungal agents.

Authors:  M M Ghorab; S M Abdel-Gawad; M S El-Gaby
Journal:  Farmaco       Date:  2000-04

5.  Dihydropyrimidin-(2H)-ones obtained by ultrasound irradiation: a new class of potential antioxidant agents.

Authors:  Hélio A Stefani; Carlindo B Oliveira; Roberta B Almeida; Claudio M P Pereira; Rodolpho C Braga; Rodrigo Cella; Vanessa C Borges; Lucielli Savegnago; Cristina W Nogueira
Journal:  Eur J Med Chem       Date:  2006-03-03       Impact factor: 6.514

  5 in total
  3 in total

1.  5-Acetyl-4-(4-methoxy-phen-yl)-6-methyl-3,4-dihydro-pyrimidine-2(1H)-thione.

Authors:  N Anuradha; A Thiruvalluvar; K Pandiarajan; S Chitra; R J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-07

2.  5-Acetyl-4-(2-chloro-phen-yl)-6-methyl-3,4-dihydro-pyrimidine-2(1H)-thione.

Authors:  N Anuradha; A Thiruvalluvar; K Pandiarajan; S Chitra; R J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14

3.  5-Benzoyl-4-(4-fluoro-phen-yl)-3,4-dihydro-pyrimidin-2(1H)-one.

Authors:  Rajni Kant; Vivek K Gupta; Kamini Kapoor; D R Patil; Madhukar B Deshmukh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-09
  3 in total

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