Literature DB >> 24454141

4-Meth-oxy-N-(pyridin-4-ylmeth-yl)-3-(tri-fluoro-meth-yl)benzamide monohydrate.

S Sreenivasa1, N R Mohan1, Vijith Kumar2, B S Palakshamurthy3, D B Arunakumar1, P A Suchetan4.   

Abstract

In the title compound, C15H13F3N2O2·H2O, the dihedral angle between the benzene and pyridine rings is 74.97 (1)°. The -CF3 group attached to the benzene ring is syn to the C=O bond in the adjacent side chain. In the crystal, mol-ecules are linked to one another through the water mol-ecules by strong N-H⋯O, O-H⋯O and O-H⋯N hydrogen bonds, forming a ladder-type network. The benzamide mol-ecules are also linked to one another through C-H⋯F inter-actions, forming C(6) chains parallel to the b-axis direction. Aromatic π-π stacking inter-actions [centroid-centroid separations = 3.7150 (1) and 3.7857 (1) Å] between adjacent pairs of pyridine and benzene rings are also observed, resulting in a three-dimensional architecture are also observed.

Entities:  

Year:  2013        PMID: 24454141      PMCID: PMC3884365          DOI: 10.1107/S1600536813029103

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the biological activity of amides, see: Manojkumar et al. (2013a ▶,b ▶); Sreenivasa et al. (2013c ▶). For the importance of amides containing tri­fluoro­methyl substituents as pharmacophores, see: Sreenivasa et al. (2013a ▶) and for amides providing structural rigidity to the mol­ecules, see: Sreenivasa et al. (2013b ▶).

Experimental

Crystal data

C15H13F3N2O2·H2O M = 328.29 Triclinic, a = 7.2687 (13) Å b = 7.8758 (14) Å c = 14.177 (3) Å α = 104.071 (10)° β = 99.672 (10)° γ = 97.21 (1)° V = 764.2 (2) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 296 K 0.34 × 0.28 × 0.22 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: ψ scan (SADABS; Bruker, 2009 ▶) T min = 0.959, T max = 0.973 11967 measured reflections 11967 independent reflections 9619 reflections with I > 2σ(I)

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.135 S = 1.06 11967 reflections 212 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: APEX2 and SAINT-Plus (Bruker, 2009 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2009 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813029103/sj5360sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813029103/sj5360Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813029103/sj5360Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13F3N2O2·H2OF(000) = 340
Mr = 328.29Prism
Triclinic, P1Dx = 1.427 Mg m3
Hall symbol: -P 1Melting point: 485 K
a = 7.2687 (13) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.8758 (14) ÅCell parameters from 1167 reflections
c = 14.177 (3) Åθ = 1.5–25.0°
α = 104.071 (10)°µ = 0.12 mm1
β = 99.672 (10)°T = 296 K
γ = 97.21 (1)°Prism, colourless
V = 764.2 (2) Å30.34 × 0.28 × 0.22 mm
Z = 2
Bruker APEXII CCD diffractometer11967 independent reflections
Radiation source: fine-focus sealed tube9619 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.000
φ and ω scansθmax = 25.0°, θmin = 1.5°
Absorption correction: ψ scan (SADABS; Bruker, 2009)h = −8→8
Tmin = 0.959, Tmax = 0.973k = −9→9
11967 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0568P)2 + 0.2647P] where P = (Fo2 + 2Fc2)/3
11967 reflections(Δ/σ)max = 0.001
212 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C40.20712 (13)−0.16715 (12)0.35758 (7)0.0408 (2)
C10.26262 (13)0.00741 (12)0.56032 (7)0.0417 (3)
C60.24913 (15)0.10202 (13)0.48940 (8)0.0468 (3)
H60.25890.22490.50920.056*
C50.22150 (14)0.01550 (13)0.39008 (8)0.0468 (3)
H50.21230.08120.34370.056*
C70.2577 (2)−0.28518 (15)0.60207 (9)0.0678 (4)
C30.22117 (14)−0.26116 (13)0.42910 (8)0.0471 (3)
H30.2120−0.38400.40900.057*
C110.32767 (14)−0.24851 (13)0.04242 (7)0.0430 (3)
C120.49099 (15)−0.13759 (13)0.09862 (7)0.0471 (3)
H120.4928−0.07020.16260.057*
C90.18106 (15)−0.26938 (14)0.25155 (8)0.0488 (3)
C20.24823 (14)−0.17729 (13)0.52871 (8)0.0452 (3)
C100.14376 (16)−0.26534 (16)0.07791 (8)0.0605 (3)
H10A0.0539−0.21480.03900.073*
H10B0.0931−0.39060.06490.073*
C130.65231 (16)−0.12678 (14)0.05948 (8)0.0538 (3)
H130.7607−0.05020.09880.065*
C80.30246 (17)0.26947 (13)0.69388 (8)0.0567 (3)
H8A0.41110.32760.67660.085*
H8B0.31540.30320.76480.085*
H8C0.19010.30420.66350.085*
C140.50371 (19)−0.32623 (15)−0.08476 (9)0.0641 (3)
H140.5059−0.3927−0.14840.077*
C150.33680 (17)−0.34444 (14)−0.05187 (8)0.0558 (3)
H150.2301−0.4212−0.09290.067*
N10.15688 (12)−0.18044 (12)0.18228 (6)0.0520 (2)
HN10.1489−0.06960.20030.062*
N20.66248 (14)−0.21897 (12)−0.03090 (7)0.0586 (3)
O10.28861 (11)0.08100 (9)0.65917 (5)0.0556 (2)
O30.89123 (14)−0.17560 (10)−0.17013 (7)0.0713 (3)
H1O0.8411−0.1809−0.12070.107*
H2O0.8934−0.2802−0.20390.107*
O20.18367 (14)−0.43033 (10)0.22891 (6)0.0790 (3)
F10.12080 (15)−0.27319 (12)0.65342 (7)0.1170 (3)
F20.41714 (13)−0.23917 (11)0.67010 (6)0.1046 (3)
F30.24329 (18)−0.45486 (10)0.55973 (6)0.1459 (5)
U11U22U33U12U13U23
C40.0431 (6)0.0365 (6)0.0412 (6)0.0039 (5)0.0103 (5)0.0078 (5)
C10.0483 (6)0.0381 (6)0.0362 (6)0.0054 (5)0.0060 (5)0.0083 (5)
C60.0653 (7)0.0322 (6)0.0415 (7)0.0077 (5)0.0093 (5)0.0091 (5)
C50.0609 (7)0.0417 (6)0.0386 (7)0.0070 (5)0.0096 (5)0.0136 (5)
C70.1090 (11)0.0452 (8)0.0500 (8)0.0187 (7)0.0111 (8)0.0155 (6)
C30.0574 (7)0.0307 (6)0.0511 (7)0.0058 (5)0.0106 (5)0.0082 (5)
C110.0548 (6)0.0382 (6)0.0346 (6)0.0066 (5)0.0068 (5)0.0092 (5)
C120.0563 (7)0.0476 (6)0.0328 (6)0.0076 (5)0.0047 (5)0.0060 (5)
C90.0508 (6)0.0430 (7)0.0475 (7)0.0026 (5)0.0119 (5)0.0045 (6)
C20.0566 (7)0.0360 (6)0.0444 (7)0.0081 (5)0.0089 (5)0.0142 (5)
C100.0565 (7)0.0739 (8)0.0378 (7)−0.0006 (6)0.0064 (5)−0.0013 (6)
C130.0532 (7)0.0541 (7)0.0490 (7)0.0039 (5)0.0024 (6)0.0124 (6)
C80.0814 (8)0.0411 (6)0.0421 (7)0.0100 (6)0.0077 (6)0.0048 (5)
C140.0830 (9)0.0553 (8)0.0476 (7)0.0037 (7)0.0236 (7)−0.0009 (6)
C150.0655 (8)0.0478 (7)0.0425 (7)−0.0041 (6)0.0120 (6)−0.0029 (5)
N10.0636 (6)0.0506 (5)0.0366 (5)0.0064 (4)0.0126 (4)0.0026 (4)
N20.0638 (6)0.0549 (6)0.0572 (7)0.0086 (5)0.0185 (5)0.0120 (5)
O10.0865 (6)0.0409 (4)0.0364 (4)0.0108 (4)0.0067 (4)0.0091 (3)
O30.0933 (6)0.0590 (5)0.0690 (6)0.0117 (5)0.0364 (5)0.0185 (4)
O20.1277 (8)0.0419 (5)0.0609 (6)0.0138 (5)0.0235 (5)−0.0004 (4)
F10.1480 (8)0.1277 (8)0.1152 (7)0.0268 (6)0.0619 (7)0.0820 (6)
F20.1252 (7)0.1093 (7)0.0871 (6)0.0239 (5)−0.0084 (5)0.0600 (5)
F30.3145 (16)0.0451 (5)0.0806 (6)0.0383 (6)0.0229 (7)0.0305 (4)
C4—C51.3843 (13)C12—H120.9300
C4—C31.3914 (13)C9—O21.2331 (12)
C4—C91.4903 (14)C9—N11.3392 (13)
C1—O11.3506 (12)C10—N11.4495 (13)
C1—C61.3875 (14)C10—H10A0.9700
C1—C21.3989 (13)C10—H10B0.9700
C6—C51.3753 (14)C13—N21.3295 (14)
C6—H60.9300C13—H130.9300
C5—H50.9300C8—O11.4305 (12)
C7—F31.3079 (13)C8—H8A0.9600
C7—F21.3240 (15)C8—H8B0.9600
C7—F11.3279 (16)C8—H8C0.9600
C7—C21.4929 (15)C14—N21.3319 (15)
C3—C21.3746 (14)C14—C151.3743 (16)
C3—H30.9300C14—H140.9300
C11—C121.3750 (14)C15—H150.9300
C11—C151.3832 (14)N1—HN10.8600
C11—C101.5072 (15)O3—H1O0.8499
C12—C131.3808 (15)O3—H2O0.8500
C5—C4—C3117.63 (9)C3—C2—C1119.91 (9)
C5—C4—C9124.51 (9)C3—C2—C7119.49 (9)
C3—C4—C9117.85 (9)C1—C2—C7120.59 (10)
O1—C1—C6124.57 (9)N1—C10—C11115.26 (9)
O1—C1—C2116.78 (8)N1—C10—H10A108.5
C6—C1—C2118.65 (9)C11—C10—H10A108.5
C5—C6—C1120.53 (9)N1—C10—H10B108.5
C5—C6—H6119.7C11—C10—H10B108.5
C1—C6—H6119.7H10A—C10—H10B107.5
C6—C5—C4121.53 (9)N2—C13—C12124.12 (10)
C6—C5—H5119.2N2—C13—H13117.9
C4—C5—H5119.2C12—C13—H13117.9
F3—C7—F2106.29 (11)O1—C8—H8A109.5
F3—C7—F1105.41 (12)O1—C8—H8B109.5
F2—C7—F1104.90 (11)H8A—C8—H8B109.5
F3—C7—C2112.39 (10)O1—C8—H8C109.5
F2—C7—C2113.54 (11)H8A—C8—H8C109.5
F1—C7—C2113.58 (10)H8B—C8—H8C109.5
C2—C3—C4121.74 (9)N2—C14—C15123.86 (11)
C2—C3—H3119.1N2—C14—H14118.1
C4—C3—H3119.1C15—C14—H14118.1
C12—C11—C15116.65 (10)C14—C15—C11119.91 (11)
C12—C11—C10123.31 (10)C14—C15—H15120.0
C15—C11—C10120.02 (9)C11—C15—H15120.0
C11—C12—C13119.61 (10)C9—N1—C10121.98 (10)
C11—C12—H12120.2C9—N1—HN1119.0
C13—C12—H12120.2C10—N1—HN1119.0
O2—C9—N1121.38 (10)C13—N2—C14115.85 (10)
O2—C9—C4120.76 (10)C1—O1—C8118.17 (7)
N1—C9—C4117.85 (9)H1O—O3—H2O109.5
O1—C1—C6—C5−179.63 (9)F3—C7—C2—C31.81 (18)
C2—C1—C6—C50.23 (15)F2—C7—C2—C3122.49 (12)
C1—C6—C5—C4−0.29 (16)F1—C7—C2—C3−117.75 (12)
C3—C4—C5—C60.15 (15)F3—C7—C2—C1−179.53 (12)
C9—C4—C5—C6−178.73 (10)F2—C7—C2—C1−58.85 (15)
C5—C4—C3—C20.05 (15)F1—C7—C2—C160.90 (15)
C9—C4—C3—C2179.00 (9)C12—C11—C10—N1−10.41 (15)
C15—C11—C12—C130.16 (14)C15—C11—C10—N1171.11 (10)
C10—C11—C12—C13−178.37 (9)C11—C12—C13—N2−0.43 (16)
C5—C4—C9—O2174.51 (10)N2—C14—C15—C11−0.26 (18)
C3—C4—C9—O2−4.36 (15)C12—C11—C15—C140.16 (15)
C5—C4—C9—N1−4.80 (15)C10—C11—C15—C14178.74 (10)
C3—C4—C9—N1176.33 (9)O2—C9—N1—C10−3.73 (16)
C4—C3—C2—C1−0.10 (16)C4—C9—N1—C10175.58 (9)
C4—C3—C2—C7178.57 (10)C11—C10—N1—C9−93.86 (12)
O1—C1—C2—C3179.83 (9)C12—C13—N2—C140.33 (16)
C6—C1—C2—C3−0.04 (15)C15—C14—N2—C130.02 (17)
O1—C1—C2—C71.17 (15)C6—C1—O1—C80.32 (15)
C6—C1—C2—C7−178.69 (10)C2—C1—O1—C8−179.53 (9)
D—H···AD—HH···AD···AD—H···A
N1—HN1···O3i0.862.122.9119 (14)152
O3—H1O···N20.852.012.8402 (15)166
O3—H2O···O2ii0.852.202.9646 (13)149
C6—H6···F3iii0.932.463.3963 (15)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—HN1⋯O3i 0.862.122.9119 (14)152
O3—H1O⋯N20.852.012.8402 (15)166
O3—H2O⋯O2ii 0.852.202.9646 (13)149
C6—H6⋯F3iii 0.932.463.3963 (15)173

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  tert-Butyl 4-{5-[3-(tri-fluoro-meth-oxy)phen-yl]-1,2,4-oxa-diazol-3-yl}piperazine-1-carboxyl-ate.

Authors:  Swamy Sreenivasa; Karikere Ekanna Manojkumar; Arakyathanahalli Kempaiah; Parameshwar Adimoole Suchetan; Bandrehalli Siddagangaiah Palakshamurthy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-20

3.  (2,3-Difluoro-phen-yl)(4-tosyl-piperazin-1-yl)methanone.

Authors:  S Sreenivasa; K E Manojkumar; P A Suchetan; J Tonannavar; Yashshwita Chavan; B S Palakshamurthy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-04

4.  N-(3-Meth-oxy-benzo-yl)-4-methyl-benzene-sulfonamide.

Authors:  S Sreenivasa; B S Palakshamurthy; T N Lohith; N R Mohan; Vijith Kumar; P A Suchetan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-17
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.