| Literature DB >> 24454141 |
S Sreenivasa1, N R Mohan1, Vijith Kumar2, B S Palakshamurthy3, D B Arunakumar1, P A Suchetan4.
Abstract
In the title compound, C15H13F3N2O2·H2O, the dihedral angle between the benzene and pyridine rings is 74.97 (1)°. The -CF3 group attached to the benzene ring is syn to the C=O bond in the adjacent side chain. In the crystal, mol-ecules are linked to one another through the water mol-ecules by strong N-H⋯O, O-H⋯O and O-H⋯N hydrogen bonds, forming a ladder-type network. The benzamide mol-ecules are also linked to one another through C-H⋯F inter-actions, forming C(6) chains parallel to the b-axis direction. Aromatic π-π stacking inter-actions [centroid-centroid separations = 3.7150 (1) and 3.7857 (1) Å] between adjacent pairs of pyridine and benzene rings are also observed, resulting in a three-dimensional architecture are also observed.Entities:
Year: 2013 PMID: 24454141 PMCID: PMC3884365 DOI: 10.1107/S1600536813029103
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H13F3N2O2·H2O | |
| Prism | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point: 485 K |
| Mo | |
| Cell parameters from 1167 reflections | |
| θ = 1.5–25.0° | |
| α = 104.071 (10)° | µ = 0.12 mm−1 |
| β = 99.672 (10)° | |
| γ = 97.21 (1)° | Prism, colourless |
| 0.34 × 0.28 × 0.22 mm | |
| Bruker APEXII CCD diffractometer | 11967 independent reflections |
| Radiation source: fine-focus sealed tube | 9619 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.0°, θmin = 1.5° |
| Absorption correction: ψ scan ( | |
| 11967 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 11967 reflections | (Δ/σ)max = 0.001 |
| 212 parameters | Δρmax = 0.36 e Å−3 |
| 0 restraints | Δρmin = −0.34 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| C4 | 0.20712 (13) | −0.16715 (12) | 0.35758 (7) | 0.0408 (2) | |
| C1 | 0.26262 (13) | 0.00741 (12) | 0.56032 (7) | 0.0417 (3) | |
| C6 | 0.24913 (15) | 0.10202 (13) | 0.48940 (8) | 0.0468 (3) | |
| H6 | 0.2589 | 0.2249 | 0.5092 | 0.056* | |
| C5 | 0.22150 (14) | 0.01550 (13) | 0.39008 (8) | 0.0468 (3) | |
| H5 | 0.2123 | 0.0812 | 0.3437 | 0.056* | |
| C7 | 0.2577 (2) | −0.28518 (15) | 0.60207 (9) | 0.0678 (4) | |
| C3 | 0.22117 (14) | −0.26116 (13) | 0.42910 (8) | 0.0471 (3) | |
| H3 | 0.2120 | −0.3840 | 0.4090 | 0.057* | |
| C11 | 0.32767 (14) | −0.24851 (13) | 0.04242 (7) | 0.0430 (3) | |
| C12 | 0.49099 (15) | −0.13759 (13) | 0.09862 (7) | 0.0471 (3) | |
| H12 | 0.4928 | −0.0702 | 0.1626 | 0.057* | |
| C9 | 0.18106 (15) | −0.26938 (14) | 0.25155 (8) | 0.0488 (3) | |
| C2 | 0.24823 (14) | −0.17729 (13) | 0.52871 (8) | 0.0452 (3) | |
| C10 | 0.14376 (16) | −0.26534 (16) | 0.07791 (8) | 0.0605 (3) | |
| H10A | 0.0539 | −0.2148 | 0.0390 | 0.073* | |
| H10B | 0.0931 | −0.3906 | 0.0649 | 0.073* | |
| C13 | 0.65231 (16) | −0.12678 (14) | 0.05948 (8) | 0.0538 (3) | |
| H13 | 0.7607 | −0.0502 | 0.0988 | 0.065* | |
| C8 | 0.30246 (17) | 0.26947 (13) | 0.69388 (8) | 0.0567 (3) | |
| H8A | 0.4111 | 0.3276 | 0.6766 | 0.085* | |
| H8B | 0.3154 | 0.3032 | 0.7648 | 0.085* | |
| H8C | 0.1901 | 0.3042 | 0.6635 | 0.085* | |
| C14 | 0.50371 (19) | −0.32623 (15) | −0.08476 (9) | 0.0641 (3) | |
| H14 | 0.5059 | −0.3927 | −0.1484 | 0.077* | |
| C15 | 0.33680 (17) | −0.34444 (14) | −0.05187 (8) | 0.0558 (3) | |
| H15 | 0.2301 | −0.4212 | −0.0929 | 0.067* | |
| N1 | 0.15688 (12) | −0.18044 (12) | 0.18228 (6) | 0.0520 (2) | |
| HN1 | 0.1489 | −0.0696 | 0.2003 | 0.062* | |
| N2 | 0.66248 (14) | −0.21897 (12) | −0.03090 (7) | 0.0586 (3) | |
| O1 | 0.28861 (11) | 0.08100 (9) | 0.65917 (5) | 0.0556 (2) | |
| O3 | 0.89123 (14) | −0.17560 (10) | −0.17013 (7) | 0.0713 (3) | |
| H1O | 0.8411 | −0.1809 | −0.1207 | 0.107* | |
| H2O | 0.8934 | −0.2802 | −0.2039 | 0.107* | |
| O2 | 0.18367 (14) | −0.43033 (10) | 0.22891 (6) | 0.0790 (3) | |
| F1 | 0.12080 (15) | −0.27319 (12) | 0.65342 (7) | 0.1170 (3) | |
| F2 | 0.41714 (13) | −0.23917 (11) | 0.67010 (6) | 0.1046 (3) | |
| F3 | 0.24329 (18) | −0.45486 (10) | 0.55973 (6) | 0.1459 (5) |
| C4 | 0.0431 (6) | 0.0365 (6) | 0.0412 (6) | 0.0039 (5) | 0.0103 (5) | 0.0078 (5) |
| C1 | 0.0483 (6) | 0.0381 (6) | 0.0362 (6) | 0.0054 (5) | 0.0060 (5) | 0.0083 (5) |
| C6 | 0.0653 (7) | 0.0322 (6) | 0.0415 (7) | 0.0077 (5) | 0.0093 (5) | 0.0091 (5) |
| C5 | 0.0609 (7) | 0.0417 (6) | 0.0386 (7) | 0.0070 (5) | 0.0096 (5) | 0.0136 (5) |
| C7 | 0.1090 (11) | 0.0452 (8) | 0.0500 (8) | 0.0187 (7) | 0.0111 (8) | 0.0155 (6) |
| C3 | 0.0574 (7) | 0.0307 (6) | 0.0511 (7) | 0.0058 (5) | 0.0106 (5) | 0.0082 (5) |
| C11 | 0.0548 (6) | 0.0382 (6) | 0.0346 (6) | 0.0066 (5) | 0.0068 (5) | 0.0092 (5) |
| C12 | 0.0563 (7) | 0.0476 (6) | 0.0328 (6) | 0.0076 (5) | 0.0047 (5) | 0.0060 (5) |
| C9 | 0.0508 (6) | 0.0430 (7) | 0.0475 (7) | 0.0026 (5) | 0.0119 (5) | 0.0045 (6) |
| C2 | 0.0566 (7) | 0.0360 (6) | 0.0444 (7) | 0.0081 (5) | 0.0089 (5) | 0.0142 (5) |
| C10 | 0.0565 (7) | 0.0739 (8) | 0.0378 (7) | −0.0006 (6) | 0.0064 (5) | −0.0013 (6) |
| C13 | 0.0532 (7) | 0.0541 (7) | 0.0490 (7) | 0.0039 (5) | 0.0024 (6) | 0.0124 (6) |
| C8 | 0.0814 (8) | 0.0411 (6) | 0.0421 (7) | 0.0100 (6) | 0.0077 (6) | 0.0048 (5) |
| C14 | 0.0830 (9) | 0.0553 (8) | 0.0476 (7) | 0.0037 (7) | 0.0236 (7) | −0.0009 (6) |
| C15 | 0.0655 (8) | 0.0478 (7) | 0.0425 (7) | −0.0041 (6) | 0.0120 (6) | −0.0029 (5) |
| N1 | 0.0636 (6) | 0.0506 (5) | 0.0366 (5) | 0.0064 (4) | 0.0126 (4) | 0.0026 (4) |
| N2 | 0.0638 (6) | 0.0549 (6) | 0.0572 (7) | 0.0086 (5) | 0.0185 (5) | 0.0120 (5) |
| O1 | 0.0865 (6) | 0.0409 (4) | 0.0364 (4) | 0.0108 (4) | 0.0067 (4) | 0.0091 (3) |
| O3 | 0.0933 (6) | 0.0590 (5) | 0.0690 (6) | 0.0117 (5) | 0.0364 (5) | 0.0185 (4) |
| O2 | 0.1277 (8) | 0.0419 (5) | 0.0609 (6) | 0.0138 (5) | 0.0235 (5) | −0.0004 (4) |
| F1 | 0.1480 (8) | 0.1277 (8) | 0.1152 (7) | 0.0268 (6) | 0.0619 (7) | 0.0820 (6) |
| F2 | 0.1252 (7) | 0.1093 (7) | 0.0871 (6) | 0.0239 (5) | −0.0084 (5) | 0.0600 (5) |
| F3 | 0.3145 (16) | 0.0451 (5) | 0.0806 (6) | 0.0383 (6) | 0.0229 (7) | 0.0305 (4) |
| C4—C5 | 1.3843 (13) | C12—H12 | 0.9300 |
| C4—C3 | 1.3914 (13) | C9—O2 | 1.2331 (12) |
| C4—C9 | 1.4903 (14) | C9—N1 | 1.3392 (13) |
| C1—O1 | 1.3506 (12) | C10—N1 | 1.4495 (13) |
| C1—C6 | 1.3875 (14) | C10—H10A | 0.9700 |
| C1—C2 | 1.3989 (13) | C10—H10B | 0.9700 |
| C6—C5 | 1.3753 (14) | C13—N2 | 1.3295 (14) |
| C6—H6 | 0.9300 | C13—H13 | 0.9300 |
| C5—H5 | 0.9300 | C8—O1 | 1.4305 (12) |
| C7—F3 | 1.3079 (13) | C8—H8A | 0.9600 |
| C7—F2 | 1.3240 (15) | C8—H8B | 0.9600 |
| C7—F1 | 1.3279 (16) | C8—H8C | 0.9600 |
| C7—C2 | 1.4929 (15) | C14—N2 | 1.3319 (15) |
| C3—C2 | 1.3746 (14) | C14—C15 | 1.3743 (16) |
| C3—H3 | 0.9300 | C14—H14 | 0.9300 |
| C11—C12 | 1.3750 (14) | C15—H15 | 0.9300 |
| C11—C15 | 1.3832 (14) | N1—HN1 | 0.8600 |
| C11—C10 | 1.5072 (15) | O3—H1O | 0.8499 |
| C12—C13 | 1.3808 (15) | O3—H2O | 0.8500 |
| C5—C4—C3 | 117.63 (9) | C3—C2—C1 | 119.91 (9) |
| C5—C4—C9 | 124.51 (9) | C3—C2—C7 | 119.49 (9) |
| C3—C4—C9 | 117.85 (9) | C1—C2—C7 | 120.59 (10) |
| O1—C1—C6 | 124.57 (9) | N1—C10—C11 | 115.26 (9) |
| O1—C1—C2 | 116.78 (8) | N1—C10—H10A | 108.5 |
| C6—C1—C2 | 118.65 (9) | C11—C10—H10A | 108.5 |
| C5—C6—C1 | 120.53 (9) | N1—C10—H10B | 108.5 |
| C5—C6—H6 | 119.7 | C11—C10—H10B | 108.5 |
| C1—C6—H6 | 119.7 | H10A—C10—H10B | 107.5 |
| C6—C5—C4 | 121.53 (9) | N2—C13—C12 | 124.12 (10) |
| C6—C5—H5 | 119.2 | N2—C13—H13 | 117.9 |
| C4—C5—H5 | 119.2 | C12—C13—H13 | 117.9 |
| F3—C7—F2 | 106.29 (11) | O1—C8—H8A | 109.5 |
| F3—C7—F1 | 105.41 (12) | O1—C8—H8B | 109.5 |
| F2—C7—F1 | 104.90 (11) | H8A—C8—H8B | 109.5 |
| F3—C7—C2 | 112.39 (10) | O1—C8—H8C | 109.5 |
| F2—C7—C2 | 113.54 (11) | H8A—C8—H8C | 109.5 |
| F1—C7—C2 | 113.58 (10) | H8B—C8—H8C | 109.5 |
| C2—C3—C4 | 121.74 (9) | N2—C14—C15 | 123.86 (11) |
| C2—C3—H3 | 119.1 | N2—C14—H14 | 118.1 |
| C4—C3—H3 | 119.1 | C15—C14—H14 | 118.1 |
| C12—C11—C15 | 116.65 (10) | C14—C15—C11 | 119.91 (11) |
| C12—C11—C10 | 123.31 (10) | C14—C15—H15 | 120.0 |
| C15—C11—C10 | 120.02 (9) | C11—C15—H15 | 120.0 |
| C11—C12—C13 | 119.61 (10) | C9—N1—C10 | 121.98 (10) |
| C11—C12—H12 | 120.2 | C9—N1—HN1 | 119.0 |
| C13—C12—H12 | 120.2 | C10—N1—HN1 | 119.0 |
| O2—C9—N1 | 121.38 (10) | C13—N2—C14 | 115.85 (10) |
| O2—C9—C4 | 120.76 (10) | C1—O1—C8 | 118.17 (7) |
| N1—C9—C4 | 117.85 (9) | H1O—O3—H2O | 109.5 |
| O1—C1—C6—C5 | −179.63 (9) | F3—C7—C2—C3 | 1.81 (18) |
| C2—C1—C6—C5 | 0.23 (15) | F2—C7—C2—C3 | 122.49 (12) |
| C1—C6—C5—C4 | −0.29 (16) | F1—C7—C2—C3 | −117.75 (12) |
| C3—C4—C5—C6 | 0.15 (15) | F3—C7—C2—C1 | −179.53 (12) |
| C9—C4—C5—C6 | −178.73 (10) | F2—C7—C2—C1 | −58.85 (15) |
| C5—C4—C3—C2 | 0.05 (15) | F1—C7—C2—C1 | 60.90 (15) |
| C9—C4—C3—C2 | 179.00 (9) | C12—C11—C10—N1 | −10.41 (15) |
| C15—C11—C12—C13 | 0.16 (14) | C15—C11—C10—N1 | 171.11 (10) |
| C10—C11—C12—C13 | −178.37 (9) | C11—C12—C13—N2 | −0.43 (16) |
| C5—C4—C9—O2 | 174.51 (10) | N2—C14—C15—C11 | −0.26 (18) |
| C3—C4—C9—O2 | −4.36 (15) | C12—C11—C15—C14 | 0.16 (15) |
| C5—C4—C9—N1 | −4.80 (15) | C10—C11—C15—C14 | 178.74 (10) |
| C3—C4—C9—N1 | 176.33 (9) | O2—C9—N1—C10 | −3.73 (16) |
| C4—C3—C2—C1 | −0.10 (16) | C4—C9—N1—C10 | 175.58 (9) |
| C4—C3—C2—C7 | 178.57 (10) | C11—C10—N1—C9 | −93.86 (12) |
| O1—C1—C2—C3 | 179.83 (9) | C12—C13—N2—C14 | 0.33 (16) |
| C6—C1—C2—C3 | −0.04 (15) | C15—C14—N2—C13 | 0.02 (17) |
| O1—C1—C2—C7 | 1.17 (15) | C6—C1—O1—C8 | 0.32 (15) |
| C6—C1—C2—C7 | −178.69 (10) | C2—C1—O1—C8 | −179.53 (9) |
| H··· | ||||
| N1—H | 0.86 | 2.12 | 2.9119 (14) | 152 |
| O3—H1 | 0.85 | 2.01 | 2.8402 (15) | 166 |
| O3—H2 | 0.85 | 2.20 | 2.9646 (13) | 149 |
| C6—H6···F3iii | 0.93 | 2.46 | 3.3963 (15) | 173 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H | 0.86 | 2.12 | 2.9119 (14) | 152 |
| O3—H1 | 0.85 | 2.01 | 2.8402 (15) | 166 |
| O3—H2 | 0.85 | 2.20 | 2.9646 (13) | 149 |
| C6—H6⋯F3iii | 0.93 | 2.46 | 3.3963 (15) | 173 |
Symmetry codes: (i) ; (ii) ; (iii) .