Literature DB >> 23424402

trans-Dibromidotetra-kis-(pyridine-κN)ruthenium(II).

Xiu-Li Wu1, Ru-Fei Ye, Ai-Quan Jia, Qun Chen, Qian-Feng Zhang.   

Abstract

The title complex, [RuBr(2)(C(5)H(5)N)(4)], contains two independent complex mol-ecules in each of which the Ru(II) atom is located on a site of 222 symmetry and has a distorted octa-hedral coordination geometry with four pyridine N atoms and two Br atoms. The Br aroms are trans-disposed as a result of symmetry.

Entities:  

Year:  2013        PMID: 23424402      PMCID: PMC3569168          DOI: 10.1107/S1600536813000871

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to ruthenium complexes: see: Pagliaro et al. (2005 ▶); van Rijt & Sadler (2009 ▶); Wu et al. (2009 ▶); Zhang et al. (2005 ▶). For related structures, see: Mirza et al. (2003 ▶); Wong & Lau (1994 ▶); Zhang et al. (2006 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

[RuBr2(C5H5N)4] M = 577.29 Orthorhombic, a = 16.830 (4) Å b = 22.032 (5) Å c = 23.221 (5) Å V = 8610 (3) Å3 Z = 16 Mo Kα radiation μ = 4.45 mm−1 T = 296 K 0.22 × 0.18 × 0.13 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.441, T max = 0.595 13382 measured reflections 2430 independent reflections 1631 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.069 S = 1.04 2430 reflections 125 parameters H-atom parameters constrained Δρmax = 0.58 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813000871/hy2613sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813000871/hy2613Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[RuBr2(C5H5N)4]F(000) = 4512
Mr = 577.29Dx = 1.781 Mg m3
Orthorhombic, FdddMo Kα radiation, λ = 0.71073 Å
Hall symbol: -F 2uv 2vwCell parameters from 2149 reflections
a = 16.830 (4) Åθ = 2.2–26.4°
b = 22.032 (5) ŵ = 4.45 mm1
c = 23.221 (5) ÅT = 296 K
V = 8610 (3) Å3Block, red
Z = 160.22 × 0.18 × 0.13 mm
Bruker APEXII CCD diffractometer2430 independent reflections
Radiation source: fine-focus sealed tube1631 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
φ and ω scansθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −21→21
Tmin = 0.441, Tmax = 0.595k = −28→28
13382 measured reflectionsl = −29→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.069H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0292P)2 + 11.6805P] where P = (Fo2 + 2Fc2)/3
2430 reflections(Δ/σ)max < 0.001
125 parametersΔρmax = 0.58 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ru10.12500.12500.12500.03562 (11)
Ru20.62500.12500.12500.03634 (11)
Br10.12500.009537 (19)0.12500.05758 (14)
Br20.62500.12500.015713 (18)0.06143 (15)
N10.03782 (12)0.12460 (9)0.18885 (9)0.0409 (5)
N20.71241 (13)0.19195 (10)0.12552 (9)0.0428 (5)
C1−0.02375 (16)0.08600 (14)0.18763 (12)0.0513 (7)
H1−0.02800.05940.15670.062*
C2−0.08052 (18)0.08388 (16)0.22953 (14)0.0643 (9)
H2−0.12230.05640.22680.077*
C3−0.0757 (2)0.12230 (16)0.27562 (15)0.0664 (9)
H3−0.11370.12160.30470.080*
C4−0.01284 (18)0.16198 (15)0.27768 (13)0.0565 (8)
H4−0.00770.18870.30840.068*
C50.04201 (16)0.16198 (13)0.23442 (11)0.0463 (6)
H50.08420.18910.23660.056*
C60.77437 (16)0.19016 (13)0.16161 (13)0.0513 (7)
H60.77830.15770.18700.062*
C70.83202 (18)0.23371 (16)0.16297 (15)0.0655 (9)
H70.87400.23040.18880.079*
C80.8280 (2)0.28178 (15)0.12661 (16)0.0721 (10)
H80.86700.31170.12690.086*
C90.76494 (19)0.28493 (15)0.08948 (16)0.0656 (9)
H90.76010.31750.06420.079*
C100.70898 (16)0.23981 (13)0.08982 (13)0.0509 (7)
H100.66670.24240.06420.061*
U11U22U33U12U13U23
Ru10.0287 (2)0.0399 (2)0.0383 (2)0.0000.0000.000
Ru20.0285 (2)0.0431 (2)0.0374 (2)0.0000.0000.000
Br10.0600 (3)0.0459 (2)0.0668 (3)0.000−0.0158 (2)0.000
Br20.0616 (3)0.0806 (3)0.0421 (2)−0.0070 (2)0.0000.000
N10.0331 (11)0.0465 (12)0.0430 (12)−0.0042 (10)−0.0006 (9)0.0007 (10)
N20.0326 (11)0.0461 (12)0.0497 (13)0.0005 (9)−0.0006 (10)0.0022 (11)
C10.0398 (15)0.0614 (18)0.0526 (17)−0.0119 (14)−0.0014 (13)0.0002 (14)
C20.0449 (18)0.081 (2)0.067 (2)−0.0174 (16)0.0047 (15)0.0060 (18)
C30.0495 (18)0.091 (2)0.0590 (19)−0.0018 (18)0.0172 (15)0.0106 (18)
C40.0482 (17)0.072 (2)0.0490 (17)0.0020 (15)0.0079 (13)−0.0041 (15)
C50.0392 (15)0.0486 (16)0.0512 (17)−0.0019 (12)0.0030 (12)−0.0028 (13)
C60.0382 (15)0.0530 (17)0.0627 (19)0.0023 (13)−0.0086 (14)−0.0006 (14)
C70.0407 (17)0.068 (2)0.088 (2)−0.0039 (15)−0.0146 (17)−0.0092 (18)
C80.0504 (19)0.053 (2)0.112 (3)−0.0150 (15)−0.001 (2)−0.004 (2)
C90.0528 (19)0.056 (2)0.088 (2)−0.0023 (15)0.0069 (18)0.0133 (18)
C100.0380 (15)0.0549 (18)0.0597 (18)−0.0009 (13)0.0018 (13)0.0077 (14)
Ru1—N1i2.086 (2)C1—H10.9300
Ru1—N1ii2.086 (2)C2—C31.367 (5)
Ru1—N12.086 (2)C2—H20.9300
Ru1—N1iii2.086 (2)C3—C41.373 (4)
Ru1—Br12.5439 (7)C3—H30.9300
Ru1—Br1ii2.5439 (7)C4—C51.364 (4)
Ru2—N2iv2.083 (2)C4—H40.9300
Ru2—N22.083 (2)C5—H50.9300
Ru2—N2i2.083 (2)C6—C71.365 (4)
Ru2—N2v2.083 (2)C6—H60.9300
Ru2—Br22.5378 (7)C7—C81.356 (5)
Ru2—Br2v2.5378 (7)C7—H70.9300
N1—C11.341 (3)C8—C91.370 (5)
N1—C51.343 (3)C8—H80.9300
N2—C61.339 (3)C9—C101.369 (4)
N2—C101.342 (3)C9—H90.9300
C1—C21.365 (4)C10—H100.9300
N1i—Ru1—N1ii179.52 (12)C6—N2—C10116.3 (2)
N1i—Ru1—N190.60 (12)C6—N2—Ru2122.20 (18)
N1ii—Ru1—N189.40 (12)C10—N2—Ru2121.48 (18)
N1i—Ru1—N1iii89.40 (12)N1—C1—C2123.2 (3)
N1ii—Ru1—N1iii90.60 (12)N1—C1—H1118.4
N1—Ru1—N1iii179.52 (12)C2—C1—H1118.4
N1i—Ru1—Br190.24 (6)C1—C2—C3119.7 (3)
N1ii—Ru1—Br190.24 (6)C1—C2—H2120.2
N1—Ru1—Br189.76 (6)C3—C2—H2120.2
N1iii—Ru1—Br189.76 (6)C2—C3—C4117.9 (3)
N1i—Ru1—Br1ii89.76 (6)C2—C3—H3121.1
N1ii—Ru1—Br1ii89.76 (6)C4—C3—H3121.1
N1—Ru1—Br1ii90.24 (6)C5—C4—C3119.7 (3)
N1iii—Ru1—Br1ii90.24 (6)C5—C4—H4120.2
Br1—Ru1—Br1ii180.0C3—C4—H4120.2
N2iv—Ru2—N2179.34 (11)N1—C5—C4123.0 (3)
N2iv—Ru2—N2i89.84 (12)N1—C5—H5118.5
N2—Ru2—N2i90.16 (12)C4—C5—H5118.5
N2iv—Ru2—N2v90.16 (12)N2—C6—C7123.2 (3)
N2—Ru2—N2v89.84 (12)N2—C6—H6118.4
N2i—Ru2—N2v179.34 (11)C7—C6—H6118.4
N2iv—Ru2—Br290.33 (6)C8—C7—C6120.0 (3)
N2—Ru2—Br290.33 (6)C8—C7—H7120.0
N2i—Ru2—Br289.67 (6)C6—C7—H7120.0
N2v—Ru2—Br289.67 (6)C7—C8—C9118.0 (3)
N2iv—Ru2—Br2v89.67 (6)C7—C8—H8121.0
N2—Ru2—Br2v89.67 (6)C9—C8—H8121.0
N2i—Ru2—Br2v90.33 (6)C10—C9—C8119.5 (3)
N2v—Ru2—Br2v90.33 (6)C10—C9—H9120.2
Br2—Ru2—Br2v180.0C8—C9—H9120.2
C1—N1—C5116.5 (2)N2—C10—C9123.0 (3)
C1—N1—Ru1122.09 (18)N2—C10—H10118.5
C5—N1—Ru1121.38 (17)C9—C10—H10118.5
Table 1

Selected bond lengths (Å)

Ru1—N12.086 (2)
Ru1—Br12.5439 (7)
Ru2—N22.083 (2)
Ru2—Br22.5378 (7)
  4 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Ru-based oxidation catalysis.

Authors:  Mario Pagliaro; Sandro Campestrini; Rosaria Ciriminna
Journal:  Chem Soc Rev       Date:  2005-08-26       Impact factor: 54.564

Review 4.  Current applications and future potential for bioinorganic chemistry in the development of anticancer drugs.

Authors:  Sabine H van Rijt; Peter J Sadler
Journal:  Drug Discov Today       Date:  2009-09-24       Impact factor: 7.851

  4 in total

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