Literature DB >> 24059506

Optobiology: optical control of biological processes via protein engineering.

Benjamin Kim, Michael Z Lin.   

Abstract

Enabling optical control over biological processes is a defining goal of the new field of optogenetics. Control of membrane voltage by natural rhodopsin family ion channels has found widespread acceptance in neuroscience, due to the fact that these natural proteins control membrane voltage without further engineering. In contrast, optical control of intracellular biological processes has been a fragmented effort, with various laboratories engineering light-responsive properties into proteins in different manners. In the present article, we review the various systems that have been developed for controlling protein functions with light based on vertebrate rhodopsins, plant photoregulatory proteins and, most recently, the photoswitchable fluorescent protein Dronpa. By allowing biology to be controlled with spatiotemporal specificity and tunable dynamics, light-controllable proteins will find applications in the understanding of cellular and organismal biology and in synthetic biology.

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Year:  2013        PMID: 24059506      PMCID: PMC4076147          DOI: 10.1042/BST20130150

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  44 in total

1.  Photoexcited CRY2 interacts with CIB1 to regulate transcription and floral initiation in Arabidopsis.

Authors:  Hongtao Liu; Xuhong Yu; Kunwu Li; John Klejnot; Hongyun Yang; Dominique Lisiero; Chentao Lin
Journal:  Science       Date:  2008-11-06       Impact factor: 47.728

2.  Induction of protein-protein interactions in live cells using light.

Authors:  Masayuki Yazawa; Amir M Sadaghiani; Brian Hsueh; Ricardo E Dolmetsch
Journal:  Nat Biotechnol       Date:  2009-10-04       Impact factor: 54.908

Review 3.  The optogenetic catechism.

Authors:  Gero Miesenböck
Journal:  Science       Date:  2009-10-16       Impact factor: 47.728

Review 4.  Structure and function of plant photoreceptors.

Authors:  Andreas Möglich; Xiaojing Yang; Rebecca A Ayers; Keith Moffat
Journal:  Annu Rev Plant Biol       Date:  2010       Impact factor: 26.379

5.  Differential regulation of protrusion and polarity by PI3K during neutrophil motility in live zebrafish.

Authors:  Sa Kan Yoo; Qing Deng; Peter J Cavnar; Yi I Wu; Klaus M Hahn; Anna Huttenlocher
Journal:  Dev Cell       Date:  2010-02-16       Impact factor: 12.270

Review 6.  Recent advances in the photochemical control of protein function.

Authors:  Chad W Riggsbee; Alexander Deiters
Journal:  Trends Biotechnol       Date:  2010-07-29       Impact factor: 19.536

Review 7.  The chemical basis of pharmacology.

Authors:  Michael J Keiser; John J Irwin; Brian K Shoichet
Journal:  Biochemistry       Date:  2010-11-12       Impact factor: 3.162

8.  Surface sites for engineering allosteric control in proteins.

Authors:  Jeeyeon Lee; Madhusudan Natarajan; Vishal C Nashine; Michael Socolich; Tina Vo; William P Russ; Stephen J Benkovic; Rama Ranganathan
Journal:  Science       Date:  2008-10-17       Impact factor: 47.728

9.  A genetically encoded photoactivatable Rac controls the motility of living cells.

Authors:  Yi I Wu; Daniel Frey; Oana I Lungu; Angelika Jaehrig; Ilme Schlichting; Brian Kuhlman; Klaus M Hahn
Journal:  Nature       Date:  2009-08-19       Impact factor: 49.962

10.  Spatiotemporal control of cell signalling using a light-switchable protein interaction.

Authors:  Anselm Levskaya; Orion D Weiner; Wendell A Lim; Christopher A Voigt
Journal:  Nature       Date:  2009-09-13       Impact factor: 49.962

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  16 in total

1.  Predictive Spatiotemporal Manipulation of Signaling Perturbations Using Optogenetics.

Authors:  Leo Valon; Fred Etoc; Amanda Remorino; Florencia di Pietro; Xavier Morin; Maxime Dahan; Mathieu Coppey
Journal:  Biophys J       Date:  2015-11-03       Impact factor: 4.033

Review 2.  Integrative systems and synthetic biology of cell-matrix adhesion sites.

Authors:  Eli Zamir
Journal:  Cell Adh Migr       Date:  2016-02-06       Impact factor: 3.405

3.  Molecular motors: Shifting gears with light.

Authors:  Samara L Reck-Peterson
Journal:  Nat Nanotechnol       Date:  2014-09       Impact factor: 39.213

4.  Ultrawidefield microscope for high-speed fluorescence imaging and targeted optogenetic stimulation.

Authors:  Christopher A Werley; Miao-Ping Chien; Adam E Cohen
Journal:  Biomed Opt Express       Date:  2017-11-29       Impact factor: 3.732

Review 5.  Optogenetic control of intracellular signaling pathways.

Authors:  Kai Zhang; Bianxiao Cui
Journal:  Trends Biotechnol       Date:  2014-12-17       Impact factor: 19.536

6.  Light-mediated Reversible Modulation of the Mitogen-activated Protein Kinase Pathway during Cell Differentiation and Xenopus Embryonic Development.

Authors:  Vishnu V Krishnamurthy; Aurora J Turgeon; John S Khamo; Payel Mondal; Savanna R Sharum; Wenyan Mei; Jing Yang; Kai Zhang
Journal:  J Vis Exp       Date:  2017-06-15       Impact factor: 1.355

7.  A light-inducible protein clustering system for in vivo analysis of α-synuclein aggregation in Parkinson disease.

Authors:  Morgan Bérard; Razan Sheta; Sarah Malvaut; Raquel Rodriguez-Aller; Maxime Teixeira; Walid Idi; Roxanne Turmel; Melanie Alpaugh; Marilyn Dubois; Manel Dahmene; Charleen Salesse; Jérôme Lamontagne-Proulx; Marie-Kim St-Pierre; Omid Tavassoly; Wen Luo; Esther Del Cid-Pellitero; Raza Qazi; Jae-Woong Jeong; Thomas M Durcan; Luc Vallières; Marie-Eve Tremblay; Denis Soulet; Martin Lévesque; Francesca Cicchetti; Edward A Fon; Armen Saghatelyan; Abid Oueslati
Journal:  PLoS Biol       Date:  2022-03-09       Impact factor: 8.029

8.  Reversible optogenetic control of kinase activity during differentiation and embryonic development.

Authors:  Vishnu V Krishnamurthy; John S Khamo; Wenyan Mei; Aurora J Turgeon; Humza M Ashraf; Payel Mondal; Dil B Patel; Noah Risner; Ellen E Cho; Jing Yang; Kai Zhang
Journal:  Development       Date:  2016-10-03       Impact factor: 6.868

9.  Engineering a light-activated caspase-3 for precise ablation of neurons in vivo.

Authors:  Ashley D Smart; Roland A Pache; Nathan D Thomsen; Tanja Kortemme; Graeme W Davis; James A Wells
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-11       Impact factor: 11.205

10.  Signal-to-Noise Ratio Measures Efficacy of Biological Computing Devices and Circuits.

Authors:  Jacob Beal
Journal:  Front Bioeng Biotechnol       Date:  2015-06-30
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