Literature DB >> 23407312

Changes in assembly processes in soil bacterial communities following a wildfire disturbance.

Scott Ferrenberg1, Sean P O'Neill, Joseph E Knelman, Bryan Todd, Sam Duggan, Daniel Bradley, Taylor Robinson, Steven K Schmidt, Alan R Townsend, Mark W Williams, Cory C Cleveland, Brett A Melbourne, Lin Jiang, Diana R Nemergut.   

Abstract

Although recent work has shown that both deterministic and stochastic processes are important in structuring microbial communities, the factors that affect the relative contributions of niche and neutral processes are poorly understood. The macrobiological literature indicates that ecological disturbances can influence assembly processes. Thus, we sampled bacterial communities at 4 and 16 weeks following a wildfire and used null deviation analysis to examine the role that time since disturbance has in community assembly. Fire dramatically altered bacterial community structure and diversity as well as soil chemistry for both time-points. Community structure shifted between 4 and 16 weeks for both burned and unburned communities. Community assembly in burned sites 4 weeks after fire was significantly more stochastic than in unburned sites. After 16 weeks, however, burned communities were significantly less stochastic than unburned communities. Thus, we propose a three-phase model featuring shifts in the relative importance of niche and neutral processes as a function of time since disturbance. Because neutral processes are characterized by a decoupling between environmental parameters and community structure, we hypothesize that a better understanding of community assembly may be important in determining where and when detailed studies of community composition are valuable for predicting ecosystem function.

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Year:  2013        PMID: 23407312      PMCID: PMC3660671          DOI: 10.1038/ismej.2013.11

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  45 in total

Review 1.  Neutral macroecology.

Authors:  G Bell
Journal:  Science       Date:  2001-09-28       Impact factor: 47.728

2.  The global distribution of ecosystems in a world without fire.

Authors:  W J Bond; F I Woodward; G F Midgley
Journal:  New Phytol       Date:  2005-02       Impact factor: 10.151

Review 3.  Effects of fire on properties of forest soils: a review.

Authors:  Giacomo Certini
Journal:  Oecologia       Date:  2005-02-02       Impact factor: 3.225

4.  Changes in nitrogen-fixing and ammonia-oxidizing bacterial communities in soil of a mixed conifer forest after wildfire.

Authors:  Chris M Yeager; Diana E Northup; Christy C Grow; Susan M Barns; Cheryl R Kuske
Journal:  Appl Environ Microbiol       Date:  2005-05       Impact factor: 4.792

Review 5.  Microbial biogeography: putting microorganisms on the map.

Authors:  Jennifer B Hughes Martiny; Brendan J M Bohannan; James H Brown; Robert K Colwell; Jed A Fuhrman; Jessica L Green; M Claire Horner-Devine; Matthew Kane; Jennifer Adams Krumins; Cheryl R Kuske; Peter J Morin; Shahid Naeem; Lise Ovreås; Anna-Louise Reysenbach; Val H Smith; James T Staley
Journal:  Nat Rev Microbiol       Date:  2006-02       Impact factor: 60.633

6.  The diversity and biogeography of soil bacterial communities.

Authors:  Noah Fierer; Robert B Jackson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-09       Impact factor: 11.205

7.  Quantifying the roles of immigration and chance in shaping prokaryote community structure.

Authors:  William T Sloan; Mary Lunn; Stephen Woodcock; Ian M Head; Sean Nee; Thomas P Curtis
Journal:  Environ Microbiol       Date:  2006-04       Impact factor: 5.491

8.  Winter forest soil respiration controlled by climate and microbial community composition.

Authors:  Russell K Monson; David L Lipson; Sean P Burns; Andrew A Turnipseed; Anthony C Delany; Mark W Williams; Steven K Schmidt
Journal:  Nature       Date:  2006-02-09       Impact factor: 49.962

9.  Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions.

Authors:  Jens Reeder; Rob Knight
Journal:  Nat Methods       Date:  2010-09       Impact factor: 28.547

10.  UniFrac: a new phylogenetic method for comparing microbial communities.

Authors:  Catherine Lozupone; Rob Knight
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

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  88 in total

1.  Quantifying the relative roles of selective and neutral processes in defining eukaryotic microbial communities.

Authors:  Peter Morrison-Whittle; Matthew R Goddard
Journal:  ISME J       Date:  2015-03-10       Impact factor: 10.302

Review 2.  Patterns and processes of microbial community assembly.

Authors:  Diana R Nemergut; Steven K Schmidt; Tadashi Fukami; Sean P O'Neill; Teresa M Bilinski; Lee F Stanish; Joseph E Knelman; John L Darcy; Ryan C Lynch; Phillip Wickey; Scott Ferrenberg
Journal:  Microbiol Mol Biol Rev       Date:  2013-09       Impact factor: 11.056

3.  Microbial Communities of High-Elevation Fumaroles, Penitentes, and Dry Tephra "Soils" of the Puna de Atacama Volcanic Zone.

Authors:  Adam J Solon; Lara Vimercati; J L Darcy; Pablo Arán; Dorota Porazinska; C Dorador; M E Farías; S K Schmidt
Journal:  Microb Ecol       Date:  2018-01-05       Impact factor: 4.552

4.  Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession.

Authors:  Francisco Dini-Andreote; James C Stegen; Jan Dirk van Elsas; Joana Falcão Salles
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-02       Impact factor: 11.205

5.  Ecological Processes Shaping Bulk Soil and Rhizosphere Microbiome Assembly in a Long-Term Amazon Forest-to-Agriculture Conversion.

Authors:  Dennis Goss-Souza; Lucas William Mendes; Jorge Luiz Mazza Rodrigues; Siu Mui Tsai
Journal:  Microb Ecol       Date:  2019-06-27       Impact factor: 4.552

Review 6.  Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change.

Authors:  Salvador Lladó; Rubén López-Mondéjar; Petr Baldrian
Journal:  Microbiol Mol Biol Rev       Date:  2017-04-12       Impact factor: 11.056

7.  Decomposition responses to climate depend on microbial community composition.

Authors:  Sydney I Glassman; Claudia Weihe; Junhui Li; Michaeline B N Albright; Caitlin I Looby; Adam C Martiny; Kathleen K Treseder; Steven D Allison; Jennifer B H Martiny
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-05       Impact factor: 11.205

8.  Taxonomical and functional microbial community selection in soybean rhizosphere.

Authors:  Lucas W Mendes; Eiko E Kuramae; Acácio A Navarrete; Johannes A van Veen; Siu M Tsai
Journal:  ISME J       Date:  2014-02-20       Impact factor: 10.302

9.  Prokaryotic communities in pit mud from different-aged cellars used for the production of Chinese strong-flavored liquor.

Authors:  Yong Tao; Jiabao Li; Junpeng Rui; Zhancheng Xu; Yan Zhou; Xiaohong Hu; Xiang Wang; Menghua Liu; Daping Li; Xiangzhen Li
Journal:  Appl Environ Microbiol       Date:  2014-01-31       Impact factor: 4.792

10.  Dynamics of bacterial community succession in a salt marsh chronosequence: evidences for temporal niche partitioning.

Authors:  Francisco Dini-Andreote; Michele de Cássia Pereira e Silva; Xavier Triadó-Margarit; Emilio O Casamayor; Jan Dirk van Elsas; Joana Falcão Salles
Journal:  ISME J       Date:  2014-04-17       Impact factor: 10.302

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