Literature DB >> 23402569

A metal-metal bond in the light-induced state of [NiFe] hydrogenases with relevance to hydrogen evolution.

Mario Kampa1, Maria-Eirini Pandelia, Wolfgang Lubitz, Maurice van Gastel, Frank Neese.   

Abstract

The light-induced Ni-L state of [NiFe] hydrogenases is well suited to investigate the identity of the amino acid base that functions as a proton acceptor in the hydrogen turnover cycle in this important class of enzymes. Density functional theory calculations have been performed on large models that include the complete [NiFe] center and parts of the second coordination sphere. Combined with experimental data, in particular from electron paramagnetic resonance and Fourier transform infrared (FTIR) spectroscopy, the calculations indicate that the hydride ion, which is located in the bridging position between nickel and iron in the Ni-C state, dissociates upon illumination as a proton and binds to a nearby thiolate base. Moreover, the formation of a functionally relevant nickel-iron bond upon dissociation of the hydride is unequivocally observed and is in full agreement with the observed g values, ligand hyperfine coupling constants, and FTIR stretching frequencies. This metal-metal bond can be protonated and thus functions like a base. The nickel-iron bond is important for all intermediates with an empty bridge in the catalytic cycle, and the electron pair that constitutes this bond thus plays a crucial role in the hydrogen evolution catalyzed by the enzyme.

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Year:  2013        PMID: 23402569     DOI: 10.1021/ja3115899

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

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2.  Electronic structure and bonding of the dinuclear metal M2(CO)10 decacarbonyls: applications of natural orbitals for chemical valence.

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Journal:  J Mol Model       Date:  2017-11-28       Impact factor: 1.810

3.  Computational Approach to Molecular Catalysis by 3d Transition Metals: Challenges and Opportunities.

Authors:  Konstantinos D Vogiatzis; Mikhail V Polynski; Justin K Kirkland; Jacob Townsend; Ali Hashemi; Chong Liu; Evgeny A Pidko
Journal:  Chem Rev       Date:  2018-10-30       Impact factor: 60.622

4.  Synthetic Models for Nickel-Iron Hydrogenase Featuring Redox-Active Ligands.

Authors:  David Schilter; Danielle L Gray; Amy L Fuller; Thomas B Rauchfuss
Journal:  Aust J Chem       Date:  2017-01-11       Impact factor: 1.321

5.  Models of the Ni-L and Ni-SIa States of the [NiFe]-Hydrogenase Active Site.

Authors:  Geoffrey M Chambers; Mioy T Huynh; Yulong Li; Sharon Hammes-Schiffer; Thomas B Rauchfuss; Edward Reijerse; Wolfgang Lubitz
Journal:  Inorg Chem       Date:  2015-09-30       Impact factor: 5.165

Review 6.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
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7.  Protonation states of intermediates in the reaction mechanism of [NiFe] hydrogenase studied by computational methods.

Authors:  Geng Dong; Ulf Ryde
Journal:  J Biol Inorg Chem       Date:  2016-03-03       Impact factor: 3.358

8.  Nickel-centred proton reduction catalysis in a model of [NiFe] hydrogenase.

Authors:  Deborah Brazzolotto; Marcello Gennari; Nicolas Queyriaux; Trevor R Simmons; Jacques Pécaut; Serhiy Demeshko; Franc Meyer; Maylis Orio; Vincent Artero; Carole Duboc
Journal:  Nat Chem       Date:  2016-07-18       Impact factor: 24.427

9.  Chemical Bonding in Homoleptic Carbonyl Cations [M{Fe(CO)5 }2 ]+ (M=Cu, Ag, Au).

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Journal:  Chemistry       Date:  2021-03-16       Impact factor: 5.236

10.  H2 activation by hydrogenase-inspired NiFe catalyst using frustrated Lewis pair: effect of buffer and halide ion in the heterolytic H-H bond cleavage.

Authors:  Miho Isegawa; Takahiro Matsumoto; Seiji Ogo
Journal:  RSC Adv       Date:  2021-08-23       Impact factor: 3.361

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