Literature DB >> 23394622

Chiral sum frequency generation for in situ probing proton exchange in antiparallel β-sheets at interfaces.

Li Fu1, Dequan Xiao, Zhuguang Wang, Victor S Batista, Elsa C Y Yan.   

Abstract

Studying hydrogen/deuterium (H/D) exchange in proteins can provide valuable insight on protein structure and dynamics. Several techniques are available for probing H/D exchange in the bulk solution, including NMR, mass spectroscopy, and Fourier transform infrared spectroscopy. However, probing H/D exchange at interfaces is challenging because it requires surface-selective methods. Here, we introduce the combination of in situ chiral sum frequency generation (cSFG) spectroscopy and ab initio simulations of cSFG spectra as a powerful methodology to probe the dynamics of H/D exchange at interfaces. This method is applied to characterize H/D exchange in the antiparallel β-sheet peptide LK7β. We report here for the first time that the rate of D-to-H exchange is about 1 order of magnitude faster than H-to-D exchange in the antiparallel structure at the air/water interface, which is consistent with the existing knowledge that O-H/D dissociation in water is the rate-limiting step, and breaking the O-D bond is slower than breaking the O-H bond. The reported analysis also provides fundamental understanding of several vibrational modes and their couplings in peptide backbones that have been difficult to characterize by conventional methods, including Fermi resonances of various combinations of peptide vibrational modes such as amide I and amide II, C-N stretch, and N-H/N-D bending. These results demonstrate cSFG as a sensitive technique for probing the kinetics of H/D exchange in proteins at interfaces, with high signal-to-noise N-H/N-D stretch bands that are free of background from the water O-H/O-D stretch.

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Year:  2013        PMID: 23394622      PMCID: PMC9208335          DOI: 10.1021/ja3119527

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   16.383


  44 in total

1.  Ideally amphipathic beta-sheeted peptides at interfaces: structure, orientation, affinities for lipids and hemolytic activity of (KL)(m)K peptides.

Authors:  S Castano; B Desbat; J Dufourcq
Journal:  Biochim Biophys Acta       Date:  2000-01-15

2.  Probing the orientation and conformation of alpha-helix and beta-strand model peptides on self-assembled monolayers using sum frequency generation and NEXAFS spectroscopy.

Authors:  Tobias Weidner; Julia S Apte; Lara J Gamble; David G Castner
Journal:  Langmuir       Date:  2010-03-02       Impact factor: 3.882

3.  Electronic and vibrational second-order nonlinear optical properties of protein secondary structural motifs.

Authors:  John M Perry; Andrew J Moad; Nathan J Begue; Ronald D Wampler; Garth J Simpson
Journal:  J Phys Chem B       Date:  2005-10-27       Impact factor: 2.991

4.  Vibrational sum-frequency spectroscopy of the water liquid/vapor interface.

Authors:  B M Auer; J L Skinner
Journal:  J Phys Chem B       Date:  2009-04-02       Impact factor: 2.991

5.  Determination of noncovalent docking by infrared spectroscopy of cold gas-phase complexes.

Authors:  Etienne Garand; Michael Z Kamrath; Peter A Jordan; Arron B Wolk; Christopher M Leavitt; Anne B McCoy; Scott J Miller; Mark A Johnson
Journal:  Science       Date:  2012-01-19       Impact factor: 47.728

6.  A structural core within apolipoprotein C-II amyloid fibrils identified using hydrogen exchange and proteolysis.

Authors:  Leanne M Wilson; Yee-Foong Mok; Katrina J Binger; Michael D W Griffin; Haydyn D T Mertens; Feng Lin; John D Wade; Paul R Gooley; Geoffrey J Howlett
Journal:  J Mol Biol       Date:  2006-12-21       Impact factor: 5.469

7.  Amphiphilic adsorption of human islet amyloid polypeptide aggregates to lipid/aqueous interfaces.

Authors:  Dequan Xiao; Li Fu; Jian Liu; Victor S Batista; Elsa C Y Yan
Journal:  J Mol Biol       Date:  2011-12-23       Impact factor: 5.469

Review 8.  Hydrogen/deuterium exchange mass spectrometry--a window into amyloid structure.

Authors:  Indu Kheterpal; Ronald Wetzel
Journal:  Acc Chem Res       Date:  2006-09       Impact factor: 22.384

Review 9.  Insights into enzyme structure and dynamics elucidated by amide H/D exchange mass spectrometry.

Authors:  Laura S Busenlehner; Richard N Armstrong
Journal:  Arch Biochem Biophys       Date:  2005-01-01       Impact factor: 4.013

10.  In situ adsorption studies of a 14-amino acid leucine-lysine peptide onto hydrophobic polystyrene and hydrophilic silica surfaces using quartz crystal microbalance, atomic force microscopy, and sum frequency generation vibrational spectroscopy.

Authors:  Ozzy Mermut; Diana C Phillips; Roger L York; Keith R McCrea; Robert S Ward; Gabor A Somorjai
Journal:  J Am Chem Soc       Date:  2006-03-22       Impact factor: 15.419

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  14 in total

1.  Lipid Fluid-Gel Phase Transition Induced Alamethicin Orientational Change Probed by Sum Frequency Generation Vibrational Spectroscopy.

Authors:  Pei Yang; Fu-Gen Wu; Zhan Chen
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2013-08-20       Impact factor: 4.126

2.  Mirror-image antiparallel β-sheets organize water molecules into superstructures of opposite chirality.

Authors:  Ethan A Perets; Daniel Konstantinovsky; Li Fu; Jiantao Chen; Hong-Fei Wang; Sharon Hammes-Schiffer; Elsa C Y Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-14       Impact factor: 11.205

3.  Structural Characterization of Single-Stranded DNA Monolayers Using Two-Dimensional Sum Frequency Generation Spectroscopy.

Authors:  Jia-Jung Ho; David R Skoff; Ayanjeet Ghosh; Martin T Zanni
Journal:  J Phys Chem B       Date:  2015-08-10       Impact factor: 2.991

4.  A narrow amide I vibrational band observed by sum frequency generation spectroscopy reveals highly ordered structures of a biofilm protein at the air/water interface.

Authors:  Zhuguang Wang; M Daniela Morales-Acosta; Shanghao Li; Wei Liu; Tapan Kanai; Yuting Liu; Ya-Na Chen; Frederick J Walker; Charles H Ahn; Roger M Leblanc; Elsa C Y Yan
Journal:  Chem Commun (Camb)       Date:  2016-02-18       Impact factor: 6.222

5.  Characterization of Parallel β-Sheets at Interfaces by Chiral Sum Frequency Generation Spectroscopy.

Authors:  Li Fu; Zhuguang Wang; Brian T Psciuk; Dequan Xiao; Victor S Batista; Elsa C Y Yan
Journal:  J Phys Chem Lett       Date:  2015-03-27       Impact factor: 6.475

6.  Site-specific orientation of an α-helical peptide ovispirin-1 from isotope-labeled SFG spectroscopy.

Authors:  Bei Ding; Jennifer E Laaser; Yuwei Liu; Pengrui Wang; Martin T Zanni; Zhan Chen
Journal:  J Phys Chem B       Date:  2013-11-14       Impact factor: 2.991

7.  Two-dimensional sum-frequency generation reveals structure and dynamics of a surface-bound peptide.

Authors:  Jennifer E Laaser; David R Skoff; Jia-Jung Ho; Yongho Joo; Arnaldo L Serrano; Jay D Steinkruger; Padma Gopalan; Samuel H Gellman; Martin T Zanni
Journal:  J Am Chem Soc       Date:  2014-01-08       Impact factor: 15.419

8.  Chiral Water Superstructures around Antiparallel β-Sheets Observed by Chiral Vibrational Sum Frequency Generation Spectroscopy.

Authors:  Ethan A Perets; Elsa C Y Yan
Journal:  J Phys Chem Lett       Date:  2019-06-07       Impact factor: 6.475

9.  Chiral Inversion of Amino Acids in Antiparallel β-Sheets at Interfaces Probed by Vibrational Sum Frequency Generation Spectroscopy.

Authors:  Ethan A Perets; Pablo E Videla; Elsa C Y Yan; Victor S Batista
Journal:  J Phys Chem B       Date:  2019-06-27       Impact factor: 3.466

10.  Broad-Bandwidth Chiral Sum Frequency Generation Spectroscopy for Probing the Kinetics of Proteins at Interfaces.

Authors:  Zhuguang Wang; Li Fu; Gang Ma; Elsa C Y Yan
Journal:  Langmuir       Date:  2015-07-30       Impact factor: 3.882

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