Literature DB >> 22267579

Determination of noncovalent docking by infrared spectroscopy of cold gas-phase complexes.

Etienne Garand1, Michael Z Kamrath, Peter A Jordan, Arron B Wolk, Christopher M Leavitt, Anne B McCoy, Scott J Miller, Mark A Johnson.   

Abstract

Multidentate, noncovalent interactions between small molecules and biopolymer fragments are central to processes ranging from drug action to selective catalysis. We present a versatile and sensitive spectroscopic probe of functional groups engaged in hydrogen bonding in such contexts. This involves measurement of the frequency changes in specific covalent bonds upon complex formation, information drawn from otherwise transient complexes that have been extracted from solution and conformationally frozen near 10 kelvin in gas-phase clusters. Resonances closely associated with individual oscillators are easily identified through site-specific isotopic labeling, as demonstrated by application of the method to an archetypal system involving a synthetic tripeptide known to bind biaryl substrates through tailored hydrogen bonding to catalyze their asymmetric bromination. With such data, calculations readily converge on the plausible operative structures in otherwise computationally prohibitive, high-dimensionality landscapes.

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Year:  2012        PMID: 22267579      PMCID: PMC4038764          DOI: 10.1126/science.1214948

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  25 in total

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3.  Noncovalent Synthesis Using Hydrogen Bonding.

Authors:  Leonard J. Prins; David N. Reinhoudt; Peter Timmerman
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Review 4.  "Strong" hydrogen bonds in chemistry and biology.

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Review 5.  Virtual screening of chemical libraries.

Authors:  Brian K Shoichet
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6.  2DIR spectroscopy of human amylin fibrils reflects stable β-sheet structure.

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Journal:  J Am Chem Soc       Date:  2011-09-15       Impact factor: 15.419

7.  Vibrational characterization of simple peptides using cryogenic infrared photodissociation of H2-tagged, mass-selected ions.

Authors:  Michael Z Kamrath; Etienne Garand; Peter A Jordan; Christopher M Leavitt; Arron B Wolk; Michael J Van Stipdonk; Scott J Miller; Mark A Johnson
Journal:  J Am Chem Soc       Date:  2011-03-30       Impact factor: 15.419

8.  Comparison of cationic, anionic and neutral hydrogen bonded dimers.

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9.  Isolating the spectra of cluster ion isomers using Ar-"tag" -mediated IR-IR double resonance within the vibrational manifolds: Application to NO2- *H2O.

Authors:  Ben M Elliott; Rachael A Relph; Joseph R Roscioli; Joseph C Bopp; George H Gardenier; Timothy L Guasco; Mark A Johnson
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10.  Potential of 13C and 15N labeling for studying protein-protein interactions using Fourier transform infrared spectroscopy.

Authors:  P I Haris; G T Robillard; A A van Dijk; D Chapman
Journal:  Biochemistry       Date:  1992-07-14       Impact factor: 3.162

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  18 in total

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2.  IR-IR Conformation Specific Spectroscopy of Na+(Glucose) Adducts.

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3.  Characterization of the non-covalent docking motif in the isolated reactant complex of a double proton-coupled electron transfer reaction with cryogenic ion spectroscopy.

Authors:  Evan H Perez; Fabian S Menges; Mauricio Cattaneo; James M Mayer; Mark A Johnson
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4.  Identification and Partial Structural Characterization of Mass Isolated Valsartan and Its Metabolite with Messenger Tagging Vibrational Spectroscopy.

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5.  Enantioselective synthesis of atropisomeric benzamides through peptide-catalyzed bromination.

Authors:  Kimberly T Barrett; Scott J Miller
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6.  Function-Oriented Investigations of a Peptide-Based Catalyst that Mediates Enantioselective Allylic Alcohol Epoxidation.

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7.  Making Mass Spectrometry See the Light: The Promises and Challenges of Cryogenic Infrared Ion Spectroscopy as a Bioanalytical Technique.

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Review 8.  Asymmetric Catalysis Mediated by Synthetic Peptides, Version 2.0: Expansion of Scope and Mechanisms.

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9.  Enantioselective synthesis of 3-arylquinazolin-4(3H)-ones via peptide-catalyzed atroposelective bromination.

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10.  Desymmetrization of Diarylmethylamido Bis(phenols) through Peptide-Catalyzed Bromination: Enantiodivergence as a Consequence of a 2 amu Alteration at an Achiral Residue within the Catalyst.

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Journal:  J Org Chem       Date:  2017-11-03       Impact factor: 4.354

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