Literature DB >> 23383942

Elastic and conformational softness of a globular protein.

Liang Hong1, Dennis C Glass, Jonathan D Nickels, Stefania Perticaroli, Zheng Yi, Madhusudan Tyagi, Hugh O'Neill, Qiu Zhang, Alexei P Sokolov, Jeremy C Smith.   

Abstract

Flexibility, or softness, is crucial for protein function and consists of a conformational component, involving jumps between potential wells, and an elastic component, involving fluctuations within the wells. Combining molecular dynamics simulation with incoherent neutron scattering and light scattering measurements on green fluorescent protein, we reveal a relationship between the intrawell fluctuations and elastic moduli of the protein. This finding leads to a simple means of experimentally separating the conformational from the elastic atomic displacements.

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Year:  2013        PMID: 23383942     DOI: 10.1103/PhysRevLett.110.028104

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  10 in total

1.  Zaccai neutron resilience and site-specific hydration dynamics in a globular protein.

Authors:  Yinglong Miao; Liang Hong; Zheng Yi; Jeremy C Smith
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-16       Impact factor: 1.890

2.  The role of momentum transfer during incoherent neutron scattering is explained by the energy landscape model.

Authors:  Hans Frauenfelder; Robert D Young; Paul W Fenimore
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-01       Impact factor: 11.205

3.  Pickin' Up Good Vibrations.

Authors:  Jeremy C Smith
Journal:  Biophys J       Date:  2017-03-14       Impact factor: 4.033

Review 4.  Why Proteins are Big: Length Scale Effects on Equilibria and Kinetics.

Authors:  Kenneth A Rubinson
Journal:  Protein J       Date:  2019-04       Impact factor: 2.371

5.  Structural basis for power stroke vs. Brownian ratchet mechanisms of motor proteins.

Authors:  Wonmuk Hwang; Martin Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-10       Impact factor: 11.205

6.  Conformational response to solvent interaction and temperature of a protein (Histone h3.1) by a multi-grained monte carlo simulation.

Authors:  Ras B Pandey; Barry L Farmer
Journal:  PLoS One       Date:  2013-10-18       Impact factor: 3.240

7.  Dynamics of water bound to crystalline cellulose.

Authors:  Hugh O'Neill; Sai Venkatesh Pingali; Loukas Petridis; Junhong He; Eugene Mamontov; Liang Hong; Volker Urban; Barbara Evans; Paul Langan; Jeremy C Smith; Brian H Davison
Journal:  Sci Rep       Date:  2017-09-19       Impact factor: 4.379

8.  Universal dynamical onset in water at distinct material interfaces.

Authors:  Lirong Zheng; Zhuo Liu; Qiang Zhang; Song Li; Juan Huang; Lei Zhang; Bing Zan; Madhusudan Tyagi; He Cheng; Taisen Zuo; Victoria García Sakai; Takeshi Yamada; Chenxing Yang; Pan Tan; Fan Jiang; Hao Chen; Wei Zhuang; Liang Hong
Journal:  Chem Sci       Date:  2022-03-28       Impact factor: 9.825

9.  Slowdown of Interhelical Motions Induces a Glass Transition in RNA.

Authors:  Aaron T Frank; Qi Zhang; Hashim M Al-Hashimi; Ioan Andricioaei
Journal:  Biophys J       Date:  2015-06-16       Impact factor: 4.033

10.  A hierarchical coarse-grained (all-atom-to-all-residue) computer simulation approach: self-assembly of peptides.

Authors:  Ras B Pandey; Zhifeng Kuang; Barry L Farmer
Journal:  PLoS One       Date:  2013-08-13       Impact factor: 3.240

  10 in total

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