Literature DB >> 23382592

Wavelet meets actogram.

Tanya L Leise1, Premananda Indic, Matthew J Paul, William J Schwartz.   

Abstract

A variety of methods to determine phase markers and period length from experimental data sets have traditionally assumed a rhythm of fixed period and amplitude. But most biological oscillations exhibit fluctuations in both period and amplitude, leading to the recent interest in the application of wavelet transforms that can measure how rhythms vary over time. Here we examine how wavelet-based methods can be extended to the analysis of conventional actograms, including the detection of onsets in circadian activity and temperature rhythms of rodents.

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Year:  2013        PMID: 23382592      PMCID: PMC4487858          DOI: 10.1177/0748730412468693

Source DB:  PubMed          Journal:  J Biol Rhythms        ISSN: 0748-7304            Impact factor:   3.182


  10 in total

1.  Multiscale characterization of chronobiological signals based on the discrete wavelet transform.

Authors:  F H Chan; B M Wu; F K Lam; P W Poon; A M Poon
Journal:  IEEE Trans Biomed Eng       Date:  2000-01       Impact factor: 4.538

2.  Rhythms of mammalian body temperature can sustain peripheral circadian clocks.

Authors:  Steven A Brown; Gottlieb Zumbrunn; Fabienne Fleury-Olela; Nicolas Preitner; Ueli Schibler
Journal:  Curr Biol       Date:  2002-09-17       Impact factor: 10.834

3.  WAVECLOCK: wavelet analysis of circadian oscillation.

Authors:  Tom S Price; Julie E Baggs; Anne M Curtis; Garret A Fitzgerald; John B Hogenesch
Journal:  Bioinformatics       Date:  2008-10-17       Impact factor: 6.937

4.  Relationship of circadian temperature and activity rhythms in two rodent species.

Authors:  P J Decoursey; S Pius; C Sandlin; D Wethey; J Schull
Journal:  Physiol Behav       Date:  1998-12-01

5.  Wavelet-based time series analysis of circadian rhythms.

Authors:  Tanya L Leise; Mary E Harrington
Journal:  J Biol Rhythms       Date:  2011-10       Impact factor: 3.182

6.  Estradiol shortens the period of hamster circadian rhythms.

Authors:  L P Morin; K M Fitzgerald; I Zucker
Journal:  Science       Date:  1977-04-15       Impact factor: 47.728

7.  Wavelet measurement suggests cause of period instability in mammalian circadian neurons.

Authors:  Kirsten Meeker; Richard Harang; Alexis B Webb; David K Welsh; Francis J Doyle; Guillaume Bonnet; Erik D Herzog; Linda R Petzold
Journal:  J Biol Rhythms       Date:  2011-08       Impact factor: 3.182

8.  Casein kinase 1 delta (CK1delta) regulates period length of the mouse suprachiasmatic circadian clock in vitro.

Authors:  Jean-Pierre Etchegaray; Elizabeth A Yu; Premananda Indic; Robert Dallmann; David R Weaver
Journal:  PLoS One       Date:  2010-04-22       Impact factor: 3.240

9.  Temperature as a universal resetting cue for mammalian circadian oscillators.

Authors:  Ethan D Buhr; Seung-Hee Yoo; Joseph S Takahashi
Journal:  Science       Date:  2010-10-15       Impact factor: 47.728

10.  Network features of the mammalian circadian clock.

Authors:  Julie E Baggs; Tom S Price; Luciano DiTacchio; Satchidananda Panda; Garret A Fitzgerald; John B Hogenesch
Journal:  PLoS Biol       Date:  2009-03-10       Impact factor: 8.029

  10 in total
  19 in total

1.  Social synchronization of circadian rhythmicity in female mice depends on the number of cohabiting animals.

Authors:  Matthew J Paul; Premananda Indic; William J Schwartz
Journal:  Biol Lett       Date:  2015-06       Impact factor: 3.703

Review 2.  Re-examining "temporal niche".

Authors:  Benjamin L Smarr; Michael D Schwartz; Cheryl Wotus; Horacio O de la Iglesia
Journal:  Integr Comp Biol       Date:  2013-05-14       Impact factor: 3.326

3.  Social forces can impact the circadian clocks of cohabiting hamsters.

Authors:  Matthew J Paul; Premananda Indic; William J Schwartz
Journal:  Proc Biol Sci       Date:  2014-02-05       Impact factor: 5.349

Review 4.  Evidence for a Coupled Oscillator Model of Endocrine Ultradian Rhythms.

Authors:  Azure D Grant; Kathryn Wilsterman; Benjamin L Smarr; Lance J Kriegsfeld
Journal:  J Biol Rhythms       Date:  2018-08-22       Impact factor: 3.182

Review 5.  Mathematical modeling of circadian rhythms.

Authors:  Ameneh Asgari-Targhi; Elizabeth B Klerman
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2018-10-17

Review 6.  Measuring synchrony in the mammalian central circadian circuit.

Authors:  Erik D Herzog; István Z Kiss; Cristina Mazuski
Journal:  Methods Enzymol       Date:  2014-12-26       Impact factor: 1.600

7.  NPAS4 regulates the transcriptional response of the suprachiasmatic nucleus to light and circadian behavior.

Authors:  Pin Xu; Stefano Berto; Ashwinikumar Kulkarni; Byeongha Jeong; Chryshanthi Joseph; Kimberly H Cox; Michael E Greenberg; Tae-Kyung Kim; Genevieve Konopka; Joseph S Takahashi
Journal:  Neuron       Date:  2021-08-19       Impact factor: 18.688

8.  Defective daily temperature regulation in a mouse model of amyotrophic lateral sclerosis.

Authors:  Maurine C Braun; Alexandra Castillo-Ruiz; Premananda Indic; Dae Young Jung; Jason K Kim; Robert H Brown; Steven J Swoap; William J Schwartz
Journal:  Exp Neurol       Date:  2018-07-18       Impact factor: 5.330

9.  Entrainment of Circadian Rhythms Depends on Firing Rates and Neuropeptide Release of VIP SCN Neurons.

Authors:  Cristina Mazuski; John H Abel; Samantha P Chen; Tracey O Hermanstyne; Jeff R Jones; Tatiana Simon; Francis J Doyle; Erik D Herzog
Journal:  Neuron       Date:  2018-07-12       Impact factor: 17.173

10.  Methods for serial analysis of long time series in the study of biological rhythms.

Authors:  Antoni Díez-Noguera
Journal:  J Circadian Rhythms       Date:  2013-07-18
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