Literature DB >> 21921299

Wavelet-based time series analysis of circadian rhythms.

Tanya L Leise1, Mary E Harrington.   

Abstract

Analysis of circadian oscillations that exhibit variability in period or amplitude can be accomplished through wavelet transforms. Wavelet-based methods can also be used quite effectively to remove trend and noise from time series and to assess the strength of rhythms in different frequency bands, for example, ultradian versus circadian components in an activity record. In this article, we describe how to apply discrete and continuous wavelet transforms to time series of circadian rhythms, illustrated with novel analyses of 2 case studies involving mouse wheel-running activity and oscillations in PER2::LUC bioluminescence from SCN explants.
© 2011 The Author(s)

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Year:  2011        PMID: 21921299     DOI: 10.1177/0748730411416330

Source DB:  PubMed          Journal:  J Biol Rhythms        ISSN: 0748-7304            Impact factor:   3.182


  37 in total

1.  CIRCADA: Shiny Apps for Exploration of Experimental and Synthetic Circadian Time Series with an Educational Emphasis.

Authors:  Lisa Cenek; Liubou Klindziuk; Cindy Lopez; Eleanor McCartney; Blanca Martin Burgos; Selma Tir; Mary E Harrington; Tanya L Leise
Journal:  J Biol Rhythms       Date:  2020-01-28       Impact factor: 3.182

2.  Amplitude metrics for cellular circadian bioluminescence reporters.

Authors:  Peter C St John; Stephanie R Taylor; John H Abel; Francis J Doyle
Journal:  Biophys J       Date:  2014-12-02       Impact factor: 4.033

Review 3.  Circadian rhythmicity of body temperature and metabolism.

Authors:  Roberto Refinetti
Journal:  Temperature (Austin)       Date:  2020-04-17

4.  Recurring circadian disruption alters circadian clock sensitivity to resetting.

Authors:  Tanya L Leise; Ariella Goldberg; John Michael; Grace Montoya; Sabrina Solow; Penny Molyneux; Ramalingam Vetrivelan; Mary E Harrington
Journal:  Eur J Neurosci       Date:  2018-10-22       Impact factor: 3.386

Review 5.  Measuring synchrony in the mammalian central circadian circuit.

Authors:  Erik D Herzog; István Z Kiss; Cristina Mazuski
Journal:  Methods Enzymol       Date:  2014-12-26       Impact factor: 1.600

6.  Wavelet meets actogram.

Authors:  Tanya L Leise; Premananda Indic; Matthew J Paul; William J Schwartz
Journal:  J Biol Rhythms       Date:  2013-02       Impact factor: 3.182

7.  Behavioral and SCN neurophysiological disruption in the Tg-SwDI mouse model of Alzheimer's disease.

Authors:  Jodi R Paul; Hira A Munir; Thomas van Groen; Karen L Gamble
Journal:  Neurobiol Dis       Date:  2018-03-11       Impact factor: 5.996

8.  Light evokes rapid circadian network oscillator desynchrony followed by gradual phase retuning of synchrony.

Authors:  Logan Roberts; Tanya L Leise; Takako Noguchi; Alexis M Galschiodt; Jerry H Houl; David K Welsh; Todd C Holmes
Journal:  Curr Biol       Date:  2015-03-05       Impact factor: 10.834

9.  Voluntary exercise can strengthen the circadian system in aged mice.

Authors:  T L Leise; M E Harrington; P C Molyneux; I Song; H Queenan; E Zimmerman; G S Lall; S M Biello
Journal:  Age (Dordr)       Date:  2013-01-23

10.  Bayesian statistical analysis of circadian oscillations in fibroblasts.

Authors:  Andrew L Cohen; Tanya L Leise; David K Welsh
Journal:  J Theor Biol       Date:  2012-09-08       Impact factor: 2.691

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