Literature DB >> 23381628

Coordinating the impact of structural genomics on the human α-helical transmembrane proteome.

Ursula Pieper1, Avner Schlessinger, Edda Kloppmann, Geoffrey A Chang, James J Chou, Mark E Dumont, Brian G Fox, Petra Fromme, Wayne A Hendrickson, Michael G Malkowski, Douglas C Rees, David L Stokes, Michael H B Stowell, Michael C Wiener, Burkhard Rost, Robert M Stroud, Raymond C Stevens, Andrej Sali.   

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Year:  2013        PMID： 23381628      PMCID： PMC3645303          DOI： 10.1038/nsmb.2508

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN： 1545-9985            Impact factor:   15.369


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  37 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  Protein structure prediction and structural genomics.

Authors:  D Baker; A Sali
Journal:  Science       Date:  2001-10-05       Impact factor: 47.728

3.  Prediction of the human membrane proteome.

Authors:  Linn Fagerberg; Kalle Jonasson; Gunnar von Heijne; Mathias Uhlén; Lisa Berglund
Journal:  Proteomics       Date:  2010-03       Impact factor: 3.984

Review 4.  Membrane protein prediction methods.

Authors:  Marco Punta; Lucy R Forrest; Henry Bigelow; Andrew Kernytsky; Jinfeng Liu; Burkhard Rost
Journal:  Methods       Date:  2007-04       Impact factor: 3.608

Review 5.  Membrane protein structural biology--how far can the bugs take us?

Authors:  Erik Granseth; Susanna Seppälä; Mikaela Rapp; Daniel O Daley; Gunnar Von Heijne
Journal:  Mol Membr Biol       Date:  2007 Sep-Dec       Impact factor: 2.857

6.  Update on the protein structure initiative.

Authors:  John C Norvell; Jeremy M Berg
Journal:  Structure       Date:  2007-12       Impact factor: 5.006

Review 7.  Biology of claudins.

Authors:  Susanne Angelow; Robert Ahlstrom; Alan S L Yu
Journal:  Am J Physiol Renal Physiol       Date:  2008-05-14

Review 8.  Membrane transporters in drug development.

Authors:  Kathleen M Giacomini; Shiew-Mei Huang; Donald J Tweedie; Leslie Z Benet; Kim L R Brouwer; Xiaoyan Chu; Amber Dahlin; Raymond Evers; Volker Fischer; Kathleen M Hillgren; Keith A Hoffmaster; Toshihisa Ishikawa; Dietrich Keppler; Richard B Kim; Caroline A Lee; Mikko Niemi; Joseph W Polli; Yuichi Sugiyama; Peter W Swaan; Joseph A Ware; Stephen H Wright; Sook Wah Yee; Maciej J Zamek-Gliszczynski; Lei Zhang
Journal:  Nat Rev Drug Discov       Date:  2010-03       Impact factor: 84.694

9.  ModBase, a database of annotated comparative protein structure models, and associated resources.

Authors:  Ursula Pieper; Benjamin M Webb; David T Barkan; Dina Schneidman-Duhovny; Avner Schlessinger; Hannes Braberg; Zheng Yang; Elaine C Meng; Eric F Pettersen; Conrad C Huang; Ruchira S Datta; Parthasarathy Sampathkumar; Mallur S Madhusudhan; Kimmen Sjölander; Thomas E Ferrin; Stephen K Burley; Andrej Sali
Journal:  Nucleic Acids Res       Date:  2010-11-19       Impact factor: 16.971

10.  NCBI BLAST: a better web interface.

Authors:  Mark Johnson; Irena Zaretskaya; Yan Raytselis; Yuri Merezhuk; Scott McGinnis; Thomas L Madden
Journal:  Nucleic Acids Res       Date:  2008-04-24       Impact factor: 16.971
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  29 in total

1.  Structure-based barcoding of proteins.

Authors:  Rahul Metri; Gaurav Jerath; Govind Kailas; Nitin Gacche; Adityabarna Pal; Vibin Ramakrishnan
Journal:  Protein Sci       Date:  2014-01       Impact factor: 6.725

2.  Dodecyl maltopyranoside enabled purification of active human GABA type A receptors for deep and direct proteomic sequencing.

Authors:  Xi Zhang; Keith W Miller
Journal:  Mol Cell Proteomics       Date:  2014-12-03       Impact factor: 5.911

3.  Computational design of orthogonal membrane receptor-effector switches for rewiring signaling pathways.

Authors:  M Young; T Dahoun; B Sokrat; C Arber; K M Chen; M Bouvier; P Barth
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-18       Impact factor: 11.205

Review 4.  Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics.

Authors:  Tatiana Maximova; Ryan Moffatt; Buyong Ma; Ruth Nussinov; Amarda Shehu
Journal:  PLoS Comput Biol       Date:  2016-04-28       Impact factor: 4.475

5.  Integrated Structural Biology for α-Helical Membrane Protein Structure Determination.

Authors:  Yan Xia; Axel W Fischer; Pedro Teixeira; Brian Weiner; Jens Meiler
Journal:  Structure       Date:  2018-03-08       Impact factor: 5.006

Review 6.  Glycomics and glycoproteomics of membrane proteins and cell-surface receptors: Present trends and future opportunities.

Authors:  Kevin Brown Chandler; Catherine E Costello
Journal:  Electrophoresis       Date:  2016-03-29       Impact factor: 3.535

Review 7.  Computational modeling of membrane proteins.

Authors:  Julia Koehler Leman; Martin B Ulmschneider; Jeffrey J Gray
Journal:  Proteins       Date:  2014-11-19

Review 8.  Protein structure annotation resources.

Authors:  Margaret J Gabanyi; Helen M Berman
Journal:  Methods Mol Biol       Date:  2015

Review 9.  General qPCR and Plate Reader Methods for Rapid Optimization of Membrane Protein Purification and Crystallization Using Thermostability Assays.

Authors:  Thomas M Tomasiak; Bjørn P Pedersen; Sarika Chaudhary; Andrew Rodriguez; Yaneth Robles Colmanares; Zygy Roe-Zurz; Sobha Thamminana; Meseret Tessema; Robert M Stroud
Journal:  Curr Protoc Protein Sci       Date:  2014-08-01

Review 10.  Molecular modeling and ligand docking for solute carrier (SLC) transporters.

Authors:  Avner Schlessinger; Natalia Khuri; Kathleen M Giacomini; Andrej Sali
Journal:  Curr Top Med Chem       Date:  2013       Impact factor: 3.295
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