| Literature DB >> 23378726 |
Haihong Shi1, Rongrong Zhu, Nan Hu, Jian Shi, Junfang Zhang, Linjuan Jiang, Hong Jiang, Huaijin Guan.
Abstract
PURPOSE: Primary angle closure (PAC) is the early stage of primary angle closure glaucoma (PACG). It is believed that the formation of PAC is regulated by a tissue remodeling pathway. This study investigated the association between gene variants in extracellular matrix metalloprotease-9 (MMP-9), methylenetetrahydrofolate reductase (MTHFR), frizzled-related protein (MFRP), heat shock protein 70 (HSP70), and PAC.Entities:
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Year: 2013 PMID: 23378726 PMCID: PMC3559095
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
Demographics of study participants.
| Demographic features | Control n (%) | PAC n (%) | P |
|---|---|---|---|
| Female | 248 (81.05) | 191 (82.33) | 0.70 |
| Male | 58 (18.95) | 41(17.67) | |
| Mean age (year)±SD | 65.08±7.53 | 64.84±8.59 | 0.74 |
| Age range | 50–85 | 50–83 | |
| Hypertension | 66 (19.64) | 46 (19.83) | 0.69 |
| Diabetes | 24 (7.36) | 20 (8.6) | 0.76 |
| cardiovascular | 10 (3.27) | 4 (1.72) | 0.41 |
Clinical features of 232 PAC subjects.
| Parameters | Right eye | Left eye | Total eyes |
|---|---|---|---|
| Axial length (mm) | 22.17±0.83 | 22.17±0.82 | 22.17±0.83 |
| ACD (mm) | 2.49±0.29 | 2.45±0.30 | 2.47±0.29 |
| Refractive (diopter) | 0.53±1.85 | 0.68±1.87 | 0.58±1.84 |
| Tonometry (mmHg) | 15.18±4.31 | 15.78±4.46 | 15.52±4.39 |
SNPs being tested and assay information from Applied Biosystems.
| Gene | SNP ID | ABI assay ID | SNP type | Chr site |
|---|---|---|---|---|
| MMP9 | C___1414756_10 | Intron | Chr.20: 44,638,136 | |
| MMP9 | C__11655953_10 | Mis-sense (Q279R) | Chr.20: 44,640,225 | |
| MFRP | C__27488402_20 | Mis-sense (M136V) | Chr.11: 119,216,504 | |
| HSP70 | C__11917510_10 | 5-UTR | Chr.6 | |
| MTHER | C___1202883_20 | Mis-sense (A222V) | Chr.1: 11,856,378 |
Allele Frequency of SNPs in control and PAC subjects.
| SNP | Call rate (%) | Allele distribution Minor/Major (%) | P | OR (95% CI) | |
|---|---|---|---|---|---|
| Control | PAC | ||||
| MMP9 | 99.8 | 171/441 (27.9) | 118/344 (25.5) | 0.38 | 0.88 (0.67–1.16) |
| MMP9 | 99.8 | 176/436 (28.8) | 117/345 (25.3) | 0.211 | 0.84 (0.64–1.10) |
| MTHFR | 99.8 | 274/338 (44.8) | 194/268(42.0) | 0.363 | 0.89 (0.70–1.14) |
| MFRP | 99.8 | 125/487 (20.4) | 68/394 (14.7) | 0.016 | 0.67 (0.49–0.93) |
| HSP70 | 100 | 214/398 (35.0) | 176/288 (37.9) | 0.317 | 1.14 (0.88–1.46) |
All HWE p values>0.05
Genotype Frequency of SNPs in control and PAC subjects.
| SNP | Genotype distribution N (%) | General | Pc 1/Pc 2 | Dominant p/OR (95% CI) | Recessive p/OR (95%CI) | ||
|---|---|---|---|---|---|---|---|
| Control | PAC | P value | |||||
| MMP9
| GG | 164(53.6) | 133(57.6) | 0.656 | 0.77/0.78 | 0.36/0.85
(0.60–1.20) | 0.74/0.91
(0.50–1.65) |
| GA | 113(36.9) | 78(33.8) | |||||
| AA | 29(9.5) | 20(8.6) | |||||
| MMP9
| CC | 160(52.3) | 133(57.6) | 0.465 | 0.55/0.56 | 0.22/0.81
(0.57–1.14) | 0.53/0.82
(0.45–1.50) |
| CT | 116(37.9) | 79(34.2) | |||||
| TT | 30(9.8) | 19(8.2) | |||||
| MTHFR | GG | 93(30.4) | 81(35.1) | 0.514 | 0.81/0.81 | 0.25/0.81
(0.56–1.16) | 0.80/0.95
(0.61–1.46) |
| GA | 152(49.7) | 106(45.9) | |||||
| AA | 61(19.9) | 44(19.0) | |||||
| MFRP | CC | 196(64.1) | 166(71.9) | 0.027 | 0.01/0.02 | 0.06/0.70
(0.48–1.01) | 0.02/0.26
(0.07–0.89) |
| CT | 95(31.0) | 62(26.8) | |||||
| TT | 15(4.9) | 3(1.3) | |||||
| HSP70 | GG | 123(40.2) | 95(41.0) | 0.048 | 0.03/0.03 | 0.86/0.97 (0.68–1.37) | 0.02/1.79 (1.08–2.97) |
| GC | 152(49.7) | 98(42.2) | |||||
| CC | 31(10.1) | 39(16.8) | |||||
All p values>0.05 after Bonferroni correction Pc 1: p value corrected for age and gender Pc 2: p value corrected for hypertension, diabetes and cardiovascular disease
Genotype Frequency of MFRP rs3814762 HSP70 rs1043618 in female control and PAC subjects.
| SNP | Genotype distribution n (%) | General P value | Dominant p/OR (95% CI) | Recessive p/OR (95%CI) | ||
|---|---|---|---|---|---|---|
| Control (n=248) | PAC (n=191) | |||||
| MFRP | CC | 154(62.1) | 138(72.6) | 0.019 | 0.02/0.62
(0.41–0.93) | 0.04/0.27
(0.08–0.95) |
| CT | 80(32.2) | 49(25.8) | ||||
| TT | 14(5.6) | 3(1.6) | ||||
| HSP70 | GG | 97(39.1) | 74(38.7) | 0.047 | 0.94/1.02 (0.69–1.50) | 0.02/1.90 (1.11–3.26) |
| GC | 124(50.0) | 81(42.4) | ||||
| CC | 27(10.9) | 36(18.8) | ||||