Literature DB >> 23347596

Chromatin dynamics at the replication fork: there's more to life than histones.

Iestyn Whitehouse1, Duncan J Smith.   

Abstract

Before each division, eukaryotic cells face the daunting task of completely and accurately replicating a heterogeneous, chromatinized genome and repackaging both resulting daughters. Because replication requires strand separation, interactions between the DNA and its many associated proteins--including histones--must be transiently broken to allow the passage of the replication fork. Here, we will discuss the disruption and re-establishment of chromatin structure during replication, and the consequences of these processes for epigenetic inheritance. Published by Elsevier Ltd.

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Year:  2013        PMID: 23347596      PMCID: PMC3657310          DOI: 10.1016/j.gde.2012.12.007

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  68 in total

1.  Chromatin assembly on replicating DNA in vitro.

Authors:  G Almouzni; D J Clark; M Méchali; A P Wolffe
Journal:  Nucleic Acids Res       Date:  1990-10-11       Impact factor: 16.971

Review 2.  Split decision: what happens to nucleosomes during DNA replication?

Authors:  Anthony T Annunziato
Journal:  J Biol Chem       Date:  2005-01-21       Impact factor: 5.157

Review 3.  Histone variants: deviants?

Authors:  Rohinton T Kamakaka; Sue Biggins
Journal:  Genes Dev       Date:  2005-02-01       Impact factor: 11.361

4.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

5.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

Authors:  Minjia Tan; Hao Luo; Sangkyu Lee; Fulai Jin; Jeong Soo Yang; Emilie Montellier; Thierry Buchou; Zhongyi Cheng; Sophie Rousseaux; Nisha Rajagopal; Zhike Lu; Zhen Ye; Qin Zhu; Joanna Wysocka; Yang Ye; Saadi Khochbin; Bing Ren; Yingming Zhao
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

6.  Dynamics and memory of heterochromatin in living cells.

Authors:  Nathaniel A Hathaway; Oliver Bell; Courtney Hodges; Erik L Miller; Dana S Neel; Gerald R Crabtree
Journal:  Cell       Date:  2012-06-14       Impact factor: 41.582

7.  Incorporation of exogenous pyrene-labeled histone into Physarum chromatin: a system for studying changes in nucleosomes assembled in vivo.

Authors:  C P Prior; C R Cantor; E M Johnson; V G Allfrey
Journal:  Cell       Date:  1980-07       Impact factor: 41.582

8.  Stepwise assembly of chromatin during DNA replication in vitro.

Authors:  S Smith; B Stillman
Journal:  EMBO J       Date:  1991-04       Impact factor: 11.598

9.  Replicon clusters are stable units of chromosome structure: evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells.

Authors:  D A Jackson; A Pombo
Journal:  J Cell Biol       Date:  1998-03-23       Impact factor: 10.539

10.  Yeast CAF-1 assembles histone (H3-H4)2 tetramers prior to DNA deposition.

Authors:  Duane D Winkler; Hui Zhou; Mohd A Dar; Zhiguo Zhang; Karolin Luger
Journal:  Nucleic Acids Res       Date:  2012-08-31       Impact factor: 16.971

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  16 in total

1.  What do you mean, "epigenetic"?

Authors:  Carrie Deans; Keith A Maggert
Journal:  Genetics       Date:  2015-04       Impact factor: 4.562

2.  G-quadruplexes significantly stimulate Pif1 helicase-catalyzed duplex DNA unwinding.

Authors:  Xiao-Lei Duan; Na-Nv Liu; Yan-Tao Yang; Hai-Hong Li; Ming Li; Shuo-Xing Dou; Xu-Guang Xi
Journal:  J Biol Chem       Date:  2015-01-27       Impact factor: 5.157

3.  Learning the Formation Mechanism of Domain-Level Chromatin States with Epigenomics Data.

Authors:  Wen Jun Xie; Bin Zhang
Journal:  Biophys J       Date:  2019-04-11       Impact factor: 4.033

Review 4.  What are memories made of? How Polycomb and Trithorax proteins mediate epigenetic memory.

Authors:  Philipp A Steffen; Leonie Ringrose
Journal:  Nat Rev Mol Cell Biol       Date:  2014-05       Impact factor: 94.444

Review 5.  Major Determinants of Nucleosome Positioning.

Authors:  Răzvan V Chereji; David J Clark
Journal:  Biophys J       Date:  2018-04-06       Impact factor: 4.033

Review 6.  Chromatin structure and replication origins: determinants of chromosome replication and nuclear organization.

Authors:  Owen K Smith; Mirit I Aladjem
Journal:  J Mol Biol       Date:  2014-06-04       Impact factor: 5.469

7.  Replication-guided nucleosome packing and nucleosome breathing expedite the formation of dense arrays.

Authors:  Brendan Osberg; Johannes Nuebler; Philipp Korber; Ulrich Gerland
Journal:  Nucleic Acids Res       Date:  2014-11-26       Impact factor: 16.971

Review 8.  Metabolic mechanisms of epigenetic regulation.

Authors:  Jordan L Meier
Journal:  ACS Chem Biol       Date:  2013-11-14       Impact factor: 5.100

9.  Re-establishment of nucleosome occupancy during double-strand break repair in budding yeast.

Authors:  Michael Tsabar; Wade M Hicks; Olga Tsaponina; James E Haber
Journal:  DNA Repair (Amst)       Date:  2016-09-28

10.  Transcriptional Regulators Compete with Nucleosomes Post-replication.

Authors:  Srinivas Ramachandran; Steven Henikoff
Journal:  Cell       Date:  2016-04-07       Impact factor: 41.582

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