Literature DB >> 10871884

Understanding protein folding via free-energy surfaces from theory and experiment.

A R Dinner1, A Sali, L J Smith, C M Dobson, M Karplus.   

Abstract

The ability of protein molecules to fold into their highly structured functional states is one of the most remarkable evolutionary achievements of biology. In recent years, our understanding of the way in which this complex self-assembly process takes place has increased dramatically. Much of the reason for this advance has been the development of energy surfaces (landscapes), which allow the folding reaction to be described and visualized in a meaningful manner. Analysis of these surfaces, derived from the constructive interplay between theory and experiment, has led to the development of a unified mechanism for folding and a recognition of the underlying factors that control the rates and products of the folding process.

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Year:  2000        PMID: 10871884     DOI: 10.1016/s0968-0004(00)01610-8

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  102 in total

1.  Conformational propagation with prion-like characteristics in a simple model of protein folding.

Authors:  P M Harrison; H S Chan; S B Prusiner; F E Cohen
Journal:  Protein Sci       Date:  2001-04       Impact factor: 6.725

2.  Free energies of protein decoys provide insight into determinants of protein stability.

Authors:  Y N Vorobjev; J Hermans
Journal:  Protein Sci       Date:  2001-12       Impact factor: 6.725

3.  Structures and relative free energies of partially folded states of proteins.

Authors:  Michele Vendruscolo; Emanuele Paci; Martin Karplus; Christopher M Dobson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

Review 4.  Getting a grip on non-native proteins.

Authors:  Peter C Stirling; Victor F Lundin; Michel R Leroux
Journal:  EMBO Rep       Date:  2003-06       Impact factor: 8.807

5.  Refolding of a high molecular weight protein: salt effect on collapse.

Authors:  D Lairez; E Pauthe; J Pelta
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

6.  Secondary and tertiary structures of gaseous protein ions characterized by electron capture dissociation mass spectrometry and photofragment spectroscopy.

Authors:  HanBin Oh; Kathrin Breuker; Siu Kwan Sze; Ying Ge; Barry K Carpenter; Fred W McLafferty
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

7.  Fast protein folding on downhill energy landscape.

Authors:  Andrea Cavalli; Urs Haberthür; Emanuele Paci; Amedeo Caflisch
Journal:  Protein Sci       Date:  2003-08       Impact factor: 6.725

8.  Calculation of mutational free energy changes in transition states for protein folding.

Authors:  Kresten Lindorff-Larsen; Emanuele Paci; Luis Serrano; Christopher M Dobson; Michele Vendruscolo
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

Review 9.  The topomer search model: A simple, quantitative theory of two-state protein folding kinetics.

Authors:  Dmitrii E Makarov; Kevin W Plaxco
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

10.  Fast-folding protein kinetics, hidden intermediates, and the sequential stabilization model.

Authors:  S Banu Ozkan; Ken A Dill; Ivet Bahar
Journal:  Protein Sci       Date:  2002-08       Impact factor: 6.725

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