Literature DB >> 28510051

Proteins in binary solvents.

Francesco Spinozzi1, Paolo Mariani2, Maria Grazia Ortore2.   

Abstract

Proteins in living organisms exist in complex aqueous solutions or embedded in membranes. In solution, proteins are surrounded by a tightly bound hydration layer, which is more ordered and less mobile than bulk water. As a consequence, water plays a major role in controlling protein structure stability, conformational flexibility, dynamics, and functionality, but it also appears that protein surface regulates the structuring of the surrounding water. The presence of cosolvents can modify the hydration layer characteristics and then the whole protein structural and dynamical properties. Because cytoplasm or biological liquids are complex solutions, the knowledge of the solvation shell characteristics in mixed solvents should be considered as a crucial step in describing biological processes at molecular level. This review reports on recent studies on the structural and thermodynamic properties of model proteins dissolved in binary solvent mixtures by small-angle neutron scattering (SANS) and differential scanning microcalorimetry (DSC) techniques. We will show that contrast variation SANS experiments allow to acquire a direct knowledge of both protein structure and protein solvation shell (in terms of low-resolution shape and solvent/cosolvent composition), while DSC experiments provide information on all the relevant thermodynamic properties. We will focus on two main points. First, an extended description of the thermodynamic model used to define the equilibria between water and cosolvent molecules in the protein solvation shell will be presented. Second, the determination of the peculiar characteristics of the protein solvation layer, which will be illustrated by considering different systems. As a conclusion, we will show that the investigation of structure and thermodynamics of proteins in binary aqueous mixtures is an important way to understand the role of hydration in protein stability and activity.

Entities:  

Keywords:  DSC; Preferential solvation; Protein–protein interaction; Protein–solvent interaction; SANS; SAXS

Year:  2016        PMID: 28510051      PMCID: PMC5425779          DOI: 10.1007/s12551-016-0193-y

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  64 in total

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Authors:  M Ikeguchi; S Nakamura; K Shimizu
Journal:  J Am Chem Soc       Date:  2001-01-31       Impact factor: 15.419

2.  Announcing the worldwide Protein Data Bank.

Authors:  Helen Berman; Kim Henrick; Haruki Nakamura
Journal:  Nat Struct Biol       Date:  2003-12

3.  Effect of the environment on the protein dynamical transition: a neutron scattering study.

Authors:  Alessandro Paciaroni; Stefania Cinelli; Giuseppe Onori
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

4.  Combining structure and dynamics: non-denaturing high-pressure effect on lysozyme in solution.

Authors:  Maria Grazia Ortore; Francesco Spinozzi; Paolo Mariani; Alessandro Paciaroni; Leandro R S Barbosa; Heinz Amenitsch; Milos Steinhart; Jacques Ollivier; Daniela Russo
Journal:  J R Soc Interface       Date:  2009-07-01       Impact factor: 4.118

5.  Calorimetric study on thermal denaturation of lysozyme in polyol-water mixtures.

Authors:  K Gekko
Journal:  J Biochem       Date:  1982-04       Impact factor: 3.387

6.  Interaction-component analysis of the urea effect on amino acid analogs.

Authors:  Yasuhito Karino; Nobuyuki Matubayasi
Journal:  Phys Chem Chem Phys       Date:  2013-03-28       Impact factor: 3.676

7.  Correct protein folding in glycerol.

Authors:  R V Rariy; A M Klibanov
Journal:  Proc Natl Acad Sci U S A       Date:  1997-12-09       Impact factor: 11.205

8.  Effects of urea and trimethylamine-N-oxide (TMAO) on the interactions of lysozyme in solution.

Authors:  Marc Niebuhr; Michel H J Koch
Journal:  Biophys J       Date:  2005-06-24       Impact factor: 4.033

9.  Excess entropy in alcohol-water solutions: a simple clustering explanation.

Authors:  Alan K Soper; Lorna Dougan; Jason Crain; John L Finney
Journal:  J Phys Chem B       Date:  2006-03-02       Impact factor: 2.991

10.  Quantifying the molecular origins of opposite solvent effects on protein-protein interactions.

Authors:  Vincent Vagenende; Alvin X Han; Han B Pek; Bernard L W Loo
Journal:  PLoS Comput Biol       Date:  2013-05-16       Impact factor: 4.475

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  4 in total

1.  A review and summary of the contents of biophysical reviews volume 8, 2016.

Authors:  Cris Dos Remedios
Journal:  Biophys Rev       Date:  2017-02-07

2.  Comprehensive Structural and Thermodynamic Analysis of Prefibrillar WT α-Synuclein and Its G51D, E46K, and A53T Mutants by a Combination of Small-Angle X-ray Scattering and Variational Bayesian Weighting.

Authors:  Paolo Moretti; Paolo Mariani; Maria Grazia Ortore; Nicoletta Plotegher; Luigi Bubacco; Mariano Beltramini; Francesco Spinozzi
Journal:  J Chem Inf Model       Date:  2020-09-17       Impact factor: 4.956

3.  Gaussian-Based Smooth Dielectric Function: A Surface-Free Approach for Modeling Macromolecular Binding in Solvents.

Authors:  Arghya Chakravorty; Zhe Jia; Yunhui Peng; Nayere Tajielyato; Lisi Wang; Emil Alexov
Journal:  Front Mol Biosci       Date:  2018-03-27

4.  SAXS Reveals the Stabilization Effects of Modified Sugars on Model Proteins.

Authors:  Astra Piccinini; Eva C Lourenço; Osvaldo S Ascenso; Maria Rita Ventura; Heinz Amenitsch; Paolo Moretti; Paolo Mariani; Maria Grazia Ortore; Francesco Spinozzi
Journal:  Life (Basel)       Date:  2022-01-15
  4 in total

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