Literature DB >> 23338523

High-throughput virtual screening of phloroglucinol derivatives against HIV-reverse transcriptase.

Vilas Belekar1, Anup Shah, Prabha Garg.   

Abstract

Therapeutic agents exert their pharmacological and adverse effects by interacting with molecular targets. Even if drug molecules are intended to interact with specific targets in a desirable manner, they are often found to bind to other targets. Nowadays, research is focused on a single molecule that simultaneously targets multiple disease-causing proteins. Therefore, off-target identification of existing chemical space can be a valuable tool to find safe and effective multi-targeted therapeutic agents at a significantly lower cost to patients. Phloroglucinols represent a class of compounds, which exhibits a diverse range of biological activities, such as anti-HIV, antimalarial, antileishmanial, antituberculosis, antibacterial, and antifungal. The aim of the current study is to explore untapped potential of various series of phloroglucinols against HIV reverse transcriptase (HIV-RTase). A series of filtering parameters was applied in search of viable phloroglucinol derivatives against HIV-RTase. A library of phloroglucinol derivatives was screened based on their toxicity potential followed by predicted ADME parameters. The filtered compounds were then carried forward for docking analysis against HIV-RTase. A set of 37 phloroglucinol compounds with diverse pharmacological profile was found to have good binding affinity towards HIV-RTase. These molecules formed hydrogen bonds with Lys101, Lys103, Val106, and Leu234 residues and π–π stacking interaction with Tyr318 residue of the protein. Here, we propose potential phloroglucinol derivatives with different known biological activity that can be repurposed as potential hits against HIV.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23338523     DOI: 10.1007/s11030-012-9417-7

Source DB:  PubMed          Journal:  Mol Divers        ISSN: 1381-1991            Impact factor:   2.943


  38 in total

1.  Comparative evaluation of eight docking tools for docking and virtual screening accuracy.

Authors:  Esther Kellenberger; Jordi Rodrigo; Pascal Muller; Didier Rognan
Journal:  Proteins       Date:  2004-11-01

2.  Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy.

Authors:  Richard A Friesner; Jay L Banks; Robert B Murphy; Thomas A Halgren; Jasna J Klicic; Daniel T Mainz; Matthew P Repasky; Eric H Knoll; Mee Shelley; Jason K Perry; David E Shaw; Perry Francis; Peter S Shenkin
Journal:  J Med Chem       Date:  2004-03-25       Impact factor: 7.446

Review 3.  Systems biology in drug discovery.

Authors:  Eugene C Butcher; Ellen L Berg; Eric J Kunkel
Journal:  Nat Biotechnol       Date:  2004-10       Impact factor: 54.908

4.  Rediscovery of known natural compounds: nuisance or goldmine?

Authors:  Martin Tulp; Lars Bohlin
Journal:  Bioorg Med Chem       Date:  2005-09-01       Impact factor: 3.641

5.  Drug-target network.

Authors:  Muhammed A Yildirim; Kwang-Il Goh; Michael E Cusick; Albert-László Barabási; Marc Vidal
Journal:  Nat Biotechnol       Date:  2007-10       Impact factor: 54.908

6.  Active site binding modes of dimeric phloroglucinols for HIV-1 reverse transcriptase, protease and integrase.

Authors:  Pawan Gupta; Rajender Kumar; Prabha Garg; Inder Pal Singh
Journal:  Bioorg Med Chem Lett       Date:  2010-06-12       Impact factor: 2.823

7.  Saroaspidin A, B, and C: additional antibiotic compounds from Hypericum japonicum.

Authors:  K Ishiguro; M Yamaki; M Kashihara; S Takagi
Journal:  Planta Med       Date:  1987-10       Impact factor: 3.352

8.  Antimicrobial Principles of Xian he cao (Agrimonia pilosa).

Authors:  M Yamaki; M Kashihara; K Ishiguro; S Takagi
Journal:  Planta Med       Date:  1989-04       Impact factor: 3.352

9.  Arzanol, an anti-inflammatory and anti-HIV-1 phloroglucinol alpha-Pyrone from Helichrysum italicum ssp. microphyllum.

Authors:  Giovanni Appendino; Michela Ottino; Nieves Marquez; Federica Bianchi; Anna Giana; Mauro Ballero; Olov Sterner; Bernd L Fiebich; Eduardo Munoz
Journal:  J Nat Prod       Date:  2007-02-22       Impact factor: 4.050

10.  Antiprotozoal and antimicrobial activities of O-alkylated and formylated acylphloroglucinols.

Authors:  Sandip B Bharate; Shabana I Khan; Nafees A M Yunus; Siddheshwar K Chauthe; Melissa R Jacob; Babu L Tekwani; Ikhlas A Khan; Inder Pal Singh
Journal:  Bioorg Med Chem       Date:  2006-10-10       Impact factor: 3.641

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.