Literature DB >> 23337769

N6-methyl-adenosine modification in messenger and long non-coding RNA.

Tao Pan1.   

Abstract

N6-methyl-adenosine (m(6)A) is the most abundant modification in mammalian mRNA and long non-coding RNA. First discovered in the 1970s, m(6)A modification has been proposed to function in mRNA splicing, export, stability, and immune tolerance. Interest and excitement in m(6)A modification has recently been revived based on the discovery of a mammalian enzyme that removes m(6)A and the application of deep sequencing to localize modification sites. The m(6)A demethylase fat mass and obesity associated protein (FTO) controls cellular energy homeostasis and is the first enzyme discovered that reverses an RNA modification. m(6)A Sequencing demonstrates cell-type- and cell-state-dependent m(6)A patterns, indicating that m(6)A modifications are highly regulated. This review describes the current knowledge of mammalian m(6)A modifications and future perspectives on how to push the field forward.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23337769      PMCID: PMC3608796          DOI: 10.1016/j.tibs.2012.12.006

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  41 in total

1.  Rationalization and prediction of selective decoding of pseudouridine-modified nonsense and sense codons.

Authors:  Marc Parisien; Chengqi Yi; Tao Pan
Journal:  RNA       Date:  2012-01-26       Impact factor: 4.942

2.  Cellular dynamics of RNA modification.

Authors:  Chengqi Yi; Tao Pan
Journal:  Acc Chem Res       Date:  2011-05-26       Impact factor: 22.384

Review 3.  Biosynthesis and function of posttranscriptional modifications of transfer RNAs.

Authors:  Basma El Yacoubi; Marc Bailly; Valérie de Crécy-Lagard
Journal:  Annu Rev Genet       Date:  2012-08-16       Impact factor: 16.830

4.  Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.

Authors:  Kate D Meyer; Yogesh Saletore; Paul Zumbo; Olivier Elemento; Christopher E Mason; Samie R Jaffrey
Journal:  Cell       Date:  2012-05-17       Impact factor: 41.582

5.  Induction of sporulation in Saccharomyces cerevisiae leads to the formation of N6-methyladenosine in mRNA: a potential mechanism for the activity of the IME4 gene.

Authors:  Mary J Clancy; Mary Eileen Shambaugh; Candace S Timpte; Joseph A Bokar
Journal:  Nucleic Acids Res       Date:  2002-10-15       Impact factor: 16.971

6.  The thermodynamic stability of RNA duplexes and hairpins containing N6-alkyladenosines and 2-methylthio-N6-alkyladenosines.

Authors:  Elzbieta Kierzek; Ryszard Kierzek
Journal:  Nucleic Acids Res       Date:  2003-08-01       Impact factor: 16.971

7.  eIF4E--from translation to transformation.

Authors:  Yaël Mamane; Emmanuel Petroulakis; Liwei Rong; Kaori Yoshida; Lian Wee Ler; Nahum Sonenberg
Journal:  Oncogene       Date:  2004-04-19       Impact factor: 9.867

8.  ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility.

Authors:  Guanqun Zheng; John Arne Dahl; Yamei Niu; Peter Fedorcsak; Chun-Min Huang; Charles J Li; Cathrine B Vågbø; Yue Shi; Wen-Ling Wang; Shu-Hui Song; Zhike Lu; Ralph P G Bosmans; Qing Dai; Ya-Juan Hao; Xin Yang; Wen-Ming Zhao; Wei-Min Tong; Xiu-Jie Wang; Florian Bogdan; Kari Furu; Ye Fu; Guifang Jia; Xu Zhao; Jun Liu; Hans E Krokan; Arne Klungland; Yun-Gui Yang; Chuan He
Journal:  Mol Cell       Date:  2012-11-21       Impact factor: 17.970

9.  Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA.

Authors:  Jeffrey E Squires; Hardip R Patel; Marco Nousch; Tennille Sibbritt; David T Humphreys; Brian J Parker; Catherine M Suter; Thomas Preiss
Journal:  Nucleic Acids Res       Date:  2012-02-16       Impact factor: 16.971

10.  Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq.

Authors:  Dan Dominissini; Sharon Moshitch-Moshkovitz; Schraga Schwartz; Mali Salmon-Divon; Lior Ungar; Sivan Osenberg; Karen Cesarkas; Jasmine Jacob-Hirsch; Ninette Amariglio; Martin Kupiec; Rotem Sorek; Gideon Rechavi
Journal:  Nature       Date:  2012-04-29       Impact factor: 49.962

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  71 in total

1.  Structural Basis for the Discriminative Recognition of N6-Methyladenosine RNA by the Human YT521-B Homology Domain Family of Proteins.

Authors:  Chao Xu; Ke Liu; Hazem Ahmed; Peter Loppnau; Matthieu Schapira; Jinrong Min
Journal:  J Biol Chem       Date:  2015-08-28       Impact factor: 5.157

2.  FTO overexpression inhibits apoptosis of hypoxia/reoxygenation-treated myocardial cells by regulating m6A modification of Mhrt.

Authors:  Wei Shen; Hongqi Li; Hao Su; Kangyu Chen; Ji Yan
Journal:  Mol Cell Biochem       Date:  2021-02-06       Impact factor: 3.396

3.  Simultaneous Quantification of Methylated Cytidine and Adenosine in Cellular and Tissue RNA by Nano-Flow Liquid Chromatography-Tandem Mass Spectrometry Coupled with the Stable Isotope-Dilution Method.

Authors:  Lijuan Fu; Nicholas J Amato; Pengcheng Wang; Sara J McGowan; Laura J Niedernhofer; Yinsheng Wang
Journal:  Anal Chem       Date:  2015-07-21       Impact factor: 6.986

Review 4.  RNA epigenetics.

Authors:  Nian Liu; Tao Pan
Journal:  Transl Res       Date:  2014-04-08       Impact factor: 7.012

Review 5.  Interplay of mitochondrial metabolism and microRNAs.

Authors:  Julian Geiger; Louise T Dalgaard
Journal:  Cell Mol Life Sci       Date:  2016-08-25       Impact factor: 9.261

6.  A deep learning framework for modeling structural features of RNA-binding protein targets.

Authors:  Sai Zhang; Jingtian Zhou; Hailin Hu; Haipeng Gong; Ligong Chen; Chao Cheng; Jianyang Zeng
Journal:  Nucleic Acids Res       Date:  2015-10-13       Impact factor: 16.971

7.  Crystal structures of the human RNA demethylase Alkbh5 reveal basis for substrate recognition.

Authors:  Chong Feng; Yang Liu; Guoqiang Wang; Zengqin Deng; Qi Zhang; Wei Wu; Yufeng Tong; Changmei Cheng; Zhongzhou Chen
Journal:  J Biol Chem       Date:  2014-03-10       Impact factor: 5.157

8.  Urinary metabolomic profiling in rats exposed to dietary di(2-ethylhexyl) phthalate (DEHP) using ultra-performance liquid chromatography quadrupole time-of-flight tandem mass spectrometry (UPLC/Q-TOF-MS).

Authors:  Xinwen Dong; Yunbo Zhang; Jin Dong; Yue Zhao; Jipeng Guo; Zhanju Wang; Mingqi Liu; Xiaolin Na; Cheng Wang
Journal:  Environ Sci Pollut Res Int       Date:  2017-05-30       Impact factor: 4.223

Review 9.  Specificity and nonspecificity in RNA-protein interactions.

Authors:  Eckhard Jankowsky; Michael E Harris
Journal:  Nat Rev Mol Cell Biol       Date:  2015-08-19       Impact factor: 94.444

10.  A link between FTO, ghrelin, and impaired brain food-cue responsivity.

Authors:  Efthimia Karra; Owen G O'Daly; Agharul I Choudhury; Ahmed Yousseif; Steven Millership; Marianne T Neary; William R Scott; Keval Chandarana; Sean Manning; Martin E Hess; Hiroshi Iwakura; Takashi Akamizu; Queensta Millet; Cigdem Gelegen; Megan E Drew; Sofia Rahman; Julian J Emmanuel; Steven C R Williams; Ulrich U Rüther; Jens C Brüning; Dominic J Withers; Fernando O Zelaya; Rachel L Batterham
Journal:  J Clin Invest       Date:  2013-07-15       Impact factor: 14.808

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