Literature DB >> 23336063

Gobichelin A and B: Mixed-Ligand Siderophores Discovered Using Proteomics.

Yunqiu Chen1, Michelle Unger, Ioanna Ntai, Ryan A McClure, Jessica C Albright, Regan J Thomson, Neil L Kelleher.   

Abstract

"Omic" strategies have been increasingly applied to natural product discovery processes, with (meta-)genome sequencing and mining implemented in many laboratories to date. Using the proteomics-based discovery platform called PrISM (Proteomic Investigation of Secondary Metabolism), we discovered two new siderophores gobichelin A and B from Streptomyces sp. NRRL F-4415, a strain without a sequenced genome. Using the proteomics information as a guide, the 37 kb gene cluster responsible for production of gobichelins was sequenced and its 20 open reading frames interpreted into a biosynthetic scheme. This led to the targeted detection and structure elucidation of the new compounds produced by nonribosomal peptide (NRP) synthesis.

Entities:  

Year:  2012        PMID: 23336063      PMCID: PMC3547389          DOI: 10.1039/C2MD20232H

Source DB:  PubMed          Journal:  Medchemcomm        ISSN: 2040-2503            Impact factor:   3.597


  21 in total

1.  Anachelin, the siderophore of the cyanobacterium Anabaena cylindrica CCAP 1403/2A.

Authors:  H Beiderbeck; K Taraz; H Budzikiewicz; A E Walsby
Journal:  Z Naturforsch C J Biosci       Date:  2000 Sep-Oct

2.  New PCR primers for the screening of NRPS and PKS-I systems in actinomycetes: detection and distribution of these biosynthetic gene sequences in major taxonomic groups.

Authors:  A Ayuso-Sacido; O Genilloud
Journal:  Microb Ecol       Date:  2004-12-21       Impact factor: 4.552

Review 3.  Assembly-line enzymology for polyketide and nonribosomal Peptide antibiotics: logic, machinery, and mechanisms.

Authors:  Michael A Fischbach; Christopher T Walsh
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

Review 4.  Natural products as sources of new drugs over the 30 years from 1981 to 2010.

Authors:  David J Newman; Gordon M Cragg
Journal:  J Nat Prod       Date:  2012-02-08       Impact factor: 4.050

5.  In vitro activity of LY146032 (daptomycin), a new peptolide.

Authors:  F Ehlert; H C Neu
Journal:  Eur J Clin Microbiol       Date:  1987-02       Impact factor: 3.267

6.  A proteomic survey of nonribosomal peptide and polyketide biosynthesis in actinobacteria.

Authors:  Yunqiu Chen; Ioanna Ntai; Kou-San Ju; Michelle Unger; Leonid Zamdborg; Sarah J Robinson; James R Doroghazi; David P Labeda; William W Metcalf; Neil L Kelleher
Journal:  J Proteome Res       Date:  2011-10-25       Impact factor: 4.466

7.  Proteomics-based discovery of koranimine, a cyclic imine natural product.

Authors:  Bradley S Evans; Ioanna Ntai; Yunqiu Chen; Sarah J Robinson; Neil L Kelleher
Journal:  J Am Chem Soc       Date:  2011-04-26       Impact factor: 15.419

8.  Salicylate biosynthesis: overexpression, purification, and characterization of Irp9, a bifunctional salicylate synthase from Yersinia enterocolitica.

Authors:  Olivier Kerbarh; Alessio Ciulli; Nigel I Howard; Chris Abell
Journal:  J Bacteriol       Date:  2005-08       Impact factor: 3.490

9.  NRPSpredictor2--a web server for predicting NRPS adenylation domain specificity.

Authors:  Marc Röttig; Marnix H Medema; Kai Blin; Tilmann Weber; Christian Rausch; Oliver Kohlbacher
Journal:  Nucleic Acids Res       Date:  2011-05-09       Impact factor: 16.971

10.  A proteomics approach to discovering natural products and their biosynthetic pathways.

Authors:  Stefanie B Bumpus; Bradley S Evans; Paul M Thomas; Ioanna Ntai; Neil L Kelleher
Journal:  Nat Biotechnol       Date:  2009-09-20       Impact factor: 54.908

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  14 in total

Review 1.  Omics-based natural product discovery and the lexicon of genome mining.

Authors:  Henrique Machado; Robert N Tuttle; Paul R Jensen
Journal:  Curr Opin Microbiol       Date:  2017-11-23       Impact factor: 7.934

2.  Molecular networking and pattern-based genome mining improves discovery of biosynthetic gene clusters and their products from Salinispora species.

Authors:  Katherine R Duncan; Max Crüsemann; Anna Lechner; Anindita Sarkar; Jie Li; Nadine Ziemert; Mingxun Wang; Nuno Bandeira; Bradley S Moore; Pieter C Dorrestein; Paul R Jensen
Journal:  Chem Biol       Date:  2015-04-09

3.  Structural Reassignment and Absolute Stereochemistry of Madurastatin C1 (MBJ-0034) and the Related Aziridine Siderophores: Madurastatins A1, B1, and MBJ-0035.

Authors:  Andrew R Tyler; Hamed Mosaei; Stephanie Morton; Paul G Waddell; Corinne Wills; William McFarlane; Joe Gray; Michael Goodfellow; Jeff Errington; Nick Allenby; Nikolay Zenkin; Michael J Hall
Journal:  J Nat Prod       Date:  2017-04-11       Impact factor: 4.050

4.  Proteomics guided discovery of flavopeptins: anti-proliferative aldehydes synthesized by a reductase domain-containing non-ribosomal peptide synthetase.

Authors:  Yunqiu Chen; Ryan A McClure; Yupeng Zheng; Regan J Thomson; Neil L Kelleher
Journal:  J Am Chem Soc       Date:  2013-07-02       Impact factor: 15.419

5.  Screening for Expressed Nonribosomal Peptide Synthetases and Polyketide Synthases Using LC-MS/MS-Based Proteomics.

Authors:  Yunqiu Chen; Ryan A McClure; Neil L Kelleher
Journal:  Methods Mol Biol       Date:  2016

6.  Strain-specific proteogenomics accelerates the discovery of natural products via their biosynthetic pathways.

Authors:  Jessica C Albright; Anthony W Goering; James R Doroghazi; William W Metcalf; Neil L Kelleher
Journal:  J Ind Microbiol Biotechnol       Date:  2013-11-19       Impact factor: 3.346

Review 7.  Potential Biotechnological Strategies for the Cleanup of Heavy Metals and Metalloids.

Authors:  Kareem A Mosa; Ismail Saadoun; Kundan Kumar; Mohamed Helmy; Om Parkash Dhankher
Journal:  Front Plant Sci       Date:  2016-03-15       Impact factor: 5.753

8.  Intertwined Precursor Supply during Biosynthesis of the Catecholate-Hydroxamate Siderophores Qinichelins in Streptomyces sp. MBT76.

Authors:  Jacob Gubbens; Changsheng Wu; Hua Zhu; Dmitri V Filippov; Bogdan I Florea; Sébastien Rigali; Herman S Overkleeft; Gilles P van Wezel
Journal:  ACS Chem Biol       Date:  2017-10-02       Impact factor: 5.100

Review 9.  The Desotamide Family of Antibiotics.

Authors:  Asif Fazal; Michael E Webb; Ryan F Seipke
Journal:  Antibiotics (Basel)       Date:  2020-07-27

10.  Discovery of cahuitamycins as biofilm inhibitors derived from a convergent biosynthetic pathway.

Authors:  Sung Ryeol Park; Ashootosh Tripathi; Jianfeng Wu; Pamela J Schultz; Isaiah Yim; Thomas J McQuade; Fengan Yu; Carl-Johan Arevang; Abraham Y Mensah; Giselle Tamayo-Castillo; Chuanwu Xi; David H Sherman
Journal:  Nat Commun       Date:  2016-02-16       Impact factor: 14.919

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