Literature DB >> 21520944

Proteomics-based discovery of koranimine, a cyclic imine natural product.

Bradley S Evans1, Ioanna Ntai, Yunqiu Chen, Sarah J Robinson, Neil L Kelleher.   

Abstract

Nonribosomal peptide synthetases (NRPSs) and polyketide synthases (PKSs) are large enzymes responsible for the biosynthesis of medically and ecologically important secondary metabolites. In a previous report, we described a proteomics approach to screen for expressed NRPSs or PKSs from bacteria with or without sequenced genomes. Here we used this proteome mining approach to discover a novel natural product arising from rare adenylation (A) and reductase (Red) domains in its biosynthetic machinery. We also cloned the entire gene cluster and elucidated the biosynthesis of the new compound, which is produced by an unsequenced Bacillus sp. isolated from soil collected in Koran, Louisiana.
© 2011 American Chemical Society

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Year:  2011        PMID: 21520944      PMCID: PMC3103991          DOI: 10.1021/ja2015795

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  22 in total

Review 1.  Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics.

Authors:  Stefano Donadio; Paolo Monciardini; Margherita Sosio
Journal:  Nat Prod Rep       Date:  2007-05-10       Impact factor: 13.423

2.  The entropy balance of nostocyclopeptide macrocyclization analysed by NMR spectroscopy.

Authors:  Sebastian Enck; Florian Kopp; Mohamed A Marahiel; Armin Geyer
Journal:  Chembiochem       Date:  2008-11-03       Impact factor: 3.164

3.  The yersiniabactin biosynthetic gene cluster of Yersinia enterocolitica: organization and siderophore-dependent regulation.

Authors:  C Pelludat; A Rakin; C A Jacobi; S Schubert; J Heesemann
Journal:  J Bacteriol       Date:  1998-02       Impact factor: 3.490

4.  Nostocyclopeptide-M1: a potent, nontoxic inhibitor of the hepatocyte drug transporters OATP1B3 and OATP1B1.

Authors:  Lars Herfindal; Lene Myhren; Rune Kleppe; Camilla Krakstad; Frode Selheim; Jouni Jokela; Kaarina Sivonen; Stein O Døskeland
Journal:  Mol Pharm       Date:  2011-01-24       Impact factor: 4.939

5.  Tandemly duplicated acyl carrier proteins, which increase polyketide antibiotic production, can apparently function either in parallel or in series.

Authors:  Ayesha S Rahman; Joanne Hothersall; John Crosby; Thomas J Simpson; Christopher M Thomas
Journal:  J Biol Chem       Date:  2004-12-06       Impact factor: 5.157

6.  Biochemical evidence for an editing role of thioesterase II in the biosynthesis of the polyketide pikromycin.

Authors:  Beom Seok Kim; T Ashton Cropp; Brian J Beck; David H Sherman; Kevin A Reynolds
Journal:  J Biol Chem       Date:  2002-10-03       Impact factor: 5.157

7.  The role of tandem acyl carrier protein domains in polyunsaturated fatty acid biosynthesis.

Authors:  Hui Jiang; Ross Zirkle; James G Metz; Lisa Braun; Leslie Richter; Steven G Van Lanen; Ben Shen
Journal:  J Am Chem Soc       Date:  2008-04-29       Impact factor: 15.419

8.  Purification, priming, and catalytic acylation of carrier protein domains in the polyketide synthase and nonribosomal peptidyl synthetase modules of the HMWP1 subunit of yersiniabactin synthetase.

Authors:  Z Suo; C C Tseng; C T Walsh
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-02       Impact factor: 11.205

9.  Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs).

Authors:  Christian Rausch; Tilmann Weber; Oliver Kohlbacher; Wolfgang Wohlleben; Daniel H Huson
Journal:  Nucleic Acids Res       Date:  2005-10-12       Impact factor: 16.971

10.  A proteomics approach to discovering natural products and their biosynthetic pathways.

Authors:  Stefanie B Bumpus; Bradley S Evans; Paul M Thomas; Ioanna Ntai; Neil L Kelleher
Journal:  Nat Biotechnol       Date:  2009-09-20       Impact factor: 54.908

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  24 in total

1.  Total Synthesis of Scytonemide A Employing Weinreb AM Solid-Phase Resin.

Authors:  Tyler A Wilson; Robert J Tokarski; Peter Sullivan; Robert M Demoret; Jimmy Orjala; L Harinantenaina Rakotondraibe; James R Fuchs
Journal:  J Nat Prod       Date:  2018-02-05       Impact factor: 4.050

2.  Biosynthetic Cyclization Catalysts for the Assembly of Peptide and Polyketide Natural Products.

Authors:  Maria L Adrover-Castellano; Jennifer J Schmidt; David H Sherman
Journal:  ChemCatChem       Date:  2021-01-28       Impact factor: 5.686

3.  Iminoboronate-Based Peptide Cyclization That Responds to pH, Oxidation, and Small Molecule Modulators.

Authors:  Anupam Bandyopadhyay; Jianmin Gao
Journal:  J Am Chem Soc       Date:  2016-02-12       Impact factor: 15.419

Review 4.  Natural products from thioester reductase containing biosynthetic pathways.

Authors:  Michael W Mullowney; Ryan A McClure; Matthew T Robey; Neil L Kelleher; Regan J Thomson
Journal:  Nat Prod Rep       Date:  2018-09-19       Impact factor: 13.423

5.  EcdGHK are three tailoring iron oxygenases for amino acid building blocks of the echinocandin scaffold.

Authors:  Wei Jiang; Ralph A Cacho; Grace Chiou; Neil K Garg; Yi Tang; Christopher T Walsh
Journal:  J Am Chem Soc       Date:  2013-03-11       Impact factor: 15.419

6.  Discovery of the antibiotic phosacetamycin via a new mass spectrometry-based method for phosphonic acid detection.

Authors:  Bradley S Evans; Changming Zhao; Jiangtao Gao; Courtney M Evans; Kou-San Ju; James R Doroghazi; Wilfred A van der Donk; Neil L Kelleher; William W Metcalf
Journal:  ACS Chem Biol       Date:  2013-03-13       Impact factor: 5.100

7.  Gobichelin A and B: Mixed-Ligand Siderophores Discovered Using Proteomics.

Authors:  Yunqiu Chen; Michelle Unger; Ioanna Ntai; Ryan A McClure; Jessica C Albright; Regan J Thomson; Neil L Kelleher
Journal:  Medchemcomm       Date:  2012-09-24       Impact factor: 3.597

Review 8.  Emerging trends in the discovery of natural product antibacterials.

Authors:  Cristian G Bologa; Oleg Ursu; Tudor I Oprea; Charles E Melançon; George P Tegos
Journal:  Curr Opin Pharmacol       Date:  2013-07-24       Impact factor: 5.547

9.  Proteomics guided discovery of flavopeptins: anti-proliferative aldehydes synthesized by a reductase domain-containing non-ribosomal peptide synthetase.

Authors:  Yunqiu Chen; Ryan A McClure; Yupeng Zheng; Regan J Thomson; Neil L Kelleher
Journal:  J Am Chem Soc       Date:  2013-07-02       Impact factor: 15.419

Review 10.  Meta-omic characterization of prokaryotic gene clusters for natural product biosynthesis.

Authors:  Michael M Schofield; David H Sherman
Journal:  Curr Opin Biotechnol       Date:  2013-05-31       Impact factor: 9.740

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