Literature DB >> 23335630

Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense.

Agnès Yu1, Gersende Lepère, Florence Jay, Jingyu Wang, Laure Bapaume, Yu Wang, Anne-Laure Abraham, Jon Penterman, Robert L Fischer, Olivier Voinnet, Lionel Navarro.   

Abstract

DNA methylation is an epigenetic mark that silences transposable elements (TEs) and repeats. Whereas the establishment and maintenance of DNA methylation are relatively well understood, little is known about their dynamics and biological relevance in plant and animal innate immunity. Here, we show that some TEs are demethylated and transcriptionally reactivated during antibacterial defense in Arabidopsis. This effect is correlated with the down-regulation of key transcriptional gene silencing factors and is partly dependent on an active demethylation process. DNA demethylation restricts multiplication and vascular propagation of the bacterial pathogen Pseudomonas syringae in leaves and, accordingly, some immune-response genes, containing repeats in their promoter regions, are negatively regulated by DNA methylation. This study provides evidence that DNA demethylation is part of a plant-induced immune response, potentially acting to prime transcriptional activation of some defense genes linked to TEs/repeats.

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Year:  2013        PMID: 23335630      PMCID: PMC3568381          DOI: 10.1073/pnas.1211757110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

1.  Mutational analysis of the Arabidopsis nucleotide binding site-leucine-rich repeat resistance gene RPS2.

Authors:  Y Tao; F Yuan; R T Leister; F M Ausubel; F Katagiri
Journal:  Plant Cell       Date:  2000-12       Impact factor: 11.277

2.  An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal.

Authors:  Frank Schwach; Fabian E Vaistij; Louise Jones; David C Baulcombe
Journal:  Plant Physiol       Date:  2005-07-22       Impact factor: 8.340

Review 3.  Roles of plant small RNAs in biotic stress responses.

Authors:  Virginia Ruiz-Ferrer; Olivier Voinnet
Journal:  Annu Rev Plant Biol       Date:  2009       Impact factor: 26.379

4.  Unexpected consequences of a sudden and massive transposon amplification on rice gene expression.

Authors:  Ken Naito; Feng Zhang; Takuji Tsukiyama; Hiroki Saito; C Nathan Hancock; Aaron O Richardson; Yutaka Okumoto; Takatoshi Tanisaka; Susan R Wessler
Journal:  Nature       Date:  2009-10-22       Impact factor: 49.962

Review 5.  Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing.

Authors:  Jeremy R Haag; Craig S Pikaard
Journal:  Nat Rev Mol Cell Biol       Date:  2011-07-22       Impact factor: 94.444

6.  An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.

Authors:  Hidetaka Ito; Hervé Gaubert; Etienne Bucher; Marie Mirouze; Isabelle Vaillant; Jerzy Paszkowski
Journal:  Nature       Date:  2011-03-13       Impact factor: 49.962

7.  Widespread dynamic DNA methylation in response to biotic stress.

Authors:  Robert H Dowen; Mattia Pelizzola; Robert J Schmitz; Ryan Lister; Jill M Dowen; Joseph R Nery; Jack E Dixon; Joseph R Ecker
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-25       Impact factor: 11.205

8.  Interplay between MAMP-triggered and SA-mediated defense responses.

Authors:  Kenichi Tsuda; Masanao Sato; Jane Glazebrook; Jerry D Cohen; Fumiaki Katagiri
Journal:  Plant J       Date:  2007-11-14       Impact factor: 6.417

Review 9.  Systemic acquired resistance.

Authors:  W E Durrant; X Dong
Journal:  Annu Rev Phytopathol       Date:  2004       Impact factor: 13.078

10.  ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase.

Authors:  Zhizhong Gong; Teresa Morales-Ruiz; Rafael R Ariza; Teresa Roldán-Arjona; Lisa David; Jian Kang Zhu
Journal:  Cell       Date:  2002-12-13       Impact factor: 41.582

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  153 in total

Review 1.  Genome plasticity in filamentous plant pathogens contributes to the emergence of novel effectors and their cellular processes in the host.

Authors:  Yanhan Dong; Ying Li; Zhongqiang Qi; Xiaobo Zheng; Zhengguang Zhang
Journal:  Curr Genet       Date:  2015-07-31       Impact factor: 3.886

2.  A DEMETER-like DNA demethylase governs tomato fruit ripening.

Authors:  Ruie Liu; Alexandre How-Kit; Linda Stammitti; Emeline Teyssier; Dominique Rolin; Anne Mortain-Bertrand; Stefanie Halle; Mingchun Liu; Junhua Kong; Chaoqun Wu; Charlotte Degraeve-Guibault; Natalie H Chapman; Mickael Maucourt; T Charlie Hodgman; Jörg Tost; Mondher Bouzayen; Yiguo Hong; Graham B Seymour; James J Giovannoni; Philippe Gallusci
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-10       Impact factor: 11.205

Review 3.  Epigenetic mechanisms of plant stress responses and adaptation.

Authors:  Pranav Pankaj Sahu; Garima Pandey; Namisha Sharma; Swati Puranik; Mehanathan Muthamilarasan; Manoj Prasad
Journal:  Plant Cell Rep       Date:  2013-05-30       Impact factor: 4.570

4.  Reconstructing de novo silencing of an active plant retrotransposon.

Authors:  Arturo Marí-Ordóñez; Antonin Marchais; Mathilde Etcheverry; Antoine Martin; Vincent Colot; Olivier Voinnet
Journal:  Nat Genet       Date:  2013-07-14       Impact factor: 38.330

Review 5.  RNA silencing suppression by plant pathogens: defence, counter-defence and counter-counter-defence.

Authors:  Nathan Pumplin; Olivier Voinnet
Journal:  Nat Rev Microbiol       Date:  2013-11       Impact factor: 60.633

6.  MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors.

Authors:  Patricia Baldrich; Sonia Campo; Ming-Tsung Wu; Tze-Tze Liu; Yue-Ie Caroline Hsing; Blanca San Segundo
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

7.  Light signaling controls nuclear architecture reorganization during seedling establishment.

Authors:  Clara Bourbousse; Imen Mestiri; Gerald Zabulon; Mickaël Bourge; Fabio Formiggini; Maria A Koini; Spencer C Brown; Paul Fransz; Chris Bowler; Fredy Barneche
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

Review 8.  Epigenetics in the plant-virus interaction.

Authors:  Chenguang Wang; Chaonan Wang; Jingze Zou; Yunshu Yang; Zhihong Li; Shuifang Zhu
Journal:  Plant Cell Rep       Date:  2019-05-07       Impact factor: 4.570

Review 9.  Phytopathogen-induced changes to plant methylomes.

Authors:  Tarek Hewezi; Vince Pantalone; Morgan Bennett; C Neal Stewart; Tessa M Burch-Smith
Journal:  Plant Cell Rep       Date:  2017-07-29       Impact factor: 4.570

10.  Genomic localization of AtRE1 and AtRE2, copia-type retrotransposons, in natural variants of Arabidopsis thaliana.

Authors:  Mari Yamada; Yumi Yamagishi; Masashi Akaoka; Hidetaka Ito; Atsushi Kato
Journal:  Mol Genet Genomics       Date:  2014-04-27       Impact factor: 3.291

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