Literature DB >> 23334347

Efficient resonance assignment of proteins in MAS NMR by simultaneous intra- and inter-residue 3D correlation spectroscopy.

Eugenio Daviso1, Matthew T Eddy, Loren B Andreas, Robert G Griffin, Judith Herzfeld.   

Abstract

Resonance assignment is the first step in NMR structure determination. For magic angle spinning NMR, this is typically achieved with a set of heteronuclear correlation experiments (NCaCX, NCOCX, CONCa) that utilize SPECIFIC-CP (15)N-(13)C transfers. However, the SPECIFIC-CP transfer efficiency is often compromised by molecular dynamics and probe performance. Here we show that one-bond ZF-TEDOR (15)N-(13)C transfers provide simultaneous NCO and NCa correlations with at least as much sensitivity as SPECIFIC-CP for some non-crystalline samples. Furthermore, a 3D ZF-TEDOR-CC experiment provides heteronuclear sidechain correlations and robustness with respect to proton decoupling and radiofrequency power instabilities. We demonstrate transfer efficiencies and connectivities by application of 3D ZF-TEDOR-DARR to a model microcrystalline protein, GB1, and a less ideal system, GvpA in intact gas vesicles.

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Year:  2013        PMID: 23334347      PMCID: PMC3615138          DOI: 10.1007/s10858-013-9707-0

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  48 in total

1.  An amyloid organelle, solid-state NMR evidence for cross-β assembly of gas vesicles.

Authors:  Marvin J Bayro; Eugenio Daviso; Marina Belenky; Robert G Griffin; Judith Herzfeld
Journal:  J Biol Chem       Date:  2011-12-06       Impact factor: 5.157

2.  Segmental polymorphism in a functional amyloid.

Authors:  Kan-Nian Hu; Ryan P McGlinchey; Reed B Wickner; Robert Tycko
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

3.  Atomic-resolution three-dimensional structure of HET-s(218-289) amyloid fibrils by solid-state NMR spectroscopy.

Authors:  Hélène Van Melckebeke; Christian Wasmer; Adam Lange; Eiso Ab; Antoine Loquet; Anja Böckmann; Beat H Meier
Journal:  J Am Chem Soc       Date:  2010-10-06       Impact factor: 15.419

4.  The core of Ure2p prion fibrils is formed by the N-terminal segment in a parallel cross-β structure: evidence from solid-state NMR.

Authors:  Dmitry S Kryndushkin; Reed B Wickner; Robert Tycko
Journal:  J Mol Biol       Date:  2011-04-08       Impact factor: 5.469

5.  Solid-state NMR on a large multidomain integral membrane protein: the outer membrane protein assembly factor BamA.

Authors:  Marie Renault; Martine P Bos; Jan Tommassen; Marc Baldus
Journal:  J Am Chem Soc       Date:  2011-03-01       Impact factor: 15.419

6.  Amyloid-like fibrils from a domain-swapping protein feature a parallel, in-register conformation without native-like interactions.

Authors:  Jun Li; Cody L Hoop; Ravindra Kodali; V N Sivanandam; Patrick C A van der Wel
Journal:  J Biol Chem       Date:  2011-06-28       Impact factor: 5.157

7.  Deterministic schedules for robust and reproducible non-uniform sampling in multidimensional NMR.

Authors:  Matthew T Eddy; David Ruben; Robert G Griffin; Judith Herzfeld
Journal:  J Magn Reson       Date:  2011-12-10       Impact factor: 2.229

8.  High-resolution MAS NMR analysis of PI3-SH3 amyloid fibrils: backbone conformation and implications for protofilament assembly and structure .

Authors:  Marvin J Bayro; Thorsten Maly; Neil R Birkett; Cait E Macphee; Christopher M Dobson; Robert G Griffin
Journal:  Biochemistry       Date:  2010-09-07       Impact factor: 3.162

9.  Experimentally derived structural constraints for amyloid fibrils of wild-type transthyretin.

Authors:  David A Bateman; Robert Tycko; Reed B Wickner
Journal:  Biophys J       Date:  2011-11-15       Impact factor: 4.033

10.  Intermolecular structure determination of amyloid fibrils with magic-angle spinning and dynamic nuclear polarization NMR.

Authors:  Marvin J Bayro; Galia T Debelouchina; Matthew T Eddy; Neil R Birkett; Catherine E MacPhee; Melanie Rosay; Werner E Maas; Christopher M Dobson; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2011-08-12       Impact factor: 15.419

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  13 in total

1.  Hybridization of TEDOR and NCX MAS solid-state NMR experiments for simultaneous acquisition of heteronuclear correlation spectra and distance measurements.

Authors:  T Gopinath; Songlin Wang; John Lee; Hideki Aihara; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2019-02-25       Impact factor: 2.835

Review 2.  High-sensitivity protein solid-state NMR spectroscopy.

Authors:  Venkata S Mandala; Mei Hong
Journal:  Curr Opin Struct Biol       Date:  2019-04-25       Impact factor: 6.809

3.  Structural characterization of the human membrane protein VDAC2 in lipid bilayers by MAS NMR.

Authors:  Matthew T Eddy; Tsyr-Yan Yu; Gerhard Wagner; Robert G Griffin
Journal:  J Biomol NMR       Date:  2019-08-12       Impact factor: 2.835

4.  Structure and Mechanism of the Influenza A M218-60 Dimer of Dimers.

Authors:  Loren B Andreas; Marcel Reese; Matthew T Eddy; Vladimir Gelev; Qing Zhe Ni; Eric A Miller; Lyndon Emsley; Guido Pintacuda; James J Chou; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2015-08-31       Impact factor: 15.419

5.  Gas vesicles across kingdoms: a comparative solid-state nuclear magnetic resonance study.

Authors:  Eugenio Daviso; Marina Belenky; Robert G Griffin; Judith Herzfeld
Journal:  J Mol Microbiol Biotechnol       Date:  2013-08-05

6.  Efficient 15N-13C Polarization Transfer by Third-Spin-Assisted Pulsed Cross-Polarization Magic-Angle-Spinning NMR for Protein Structure Determination.

Authors:  Martin D Gelenter; Mei Hong
Journal:  J Phys Chem B       Date:  2018-08-28       Impact factor: 2.991

7.  Site-specific structural variations accompanying tubular assembly of the HIV-1 capsid protein.

Authors:  Marvin J Bayro; Bo Chen; Wai-Ming Yau; Robert Tycko
Journal:  J Mol Biol       Date:  2013-12-24       Impact factor: 5.469

8.  Secondary structure in the core of amyloid fibrils formed from human β₂m and its truncated variant ΔN6.

Authors:  Yongchao Su; Claire J Sarell; Matthew T Eddy; Galia T Debelouchina; Loren B Andreas; Clare L Pashley; Sheena E Radford; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2014-04-16       Impact factor: 15.419

9.  The Transmembrane Conformation of the Influenza B Virus M2 Protein in Lipid Bilayers.

Authors:  Venkata S Mandala; Shu-Yu Liao; Martin D Gelenter; Mei Hong
Journal:  Sci Rep       Date:  2019-03-06       Impact factor: 4.379

10.  Bidirectional band-selective magnetization transfer along the protein backbone doubles the information content of solid-state NMR correlation experiments.

Authors:  M M Jolly; J A Jarvis; M Carravetta; M H Levitt; P T F Williamson
Journal:  J Biomol NMR       Date:  2017-11-08       Impact factor: 2.835

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