Literature DB >> 30106585

Efficient 15N-13C Polarization Transfer by Third-Spin-Assisted Pulsed Cross-Polarization Magic-Angle-Spinning NMR for Protein Structure Determination.

Martin D Gelenter1, Mei Hong1.   

Abstract

We introduce a pulsed third-spin-assisted recoupling experiment that produces high-intensity long-range 15N-13C cross peaks using low radiofrequency (rf) energy. This Proton-Enhanced Rotor-echo Short-Pulse IRradiATION Cross-Polarization (PERSPIRATIONCP) pulse sequence operates with the same principle as the Proton-Assisted Insensitive-Nuclei Cross-Polarization (PAINCP) experiment but uses only a fraction of the rf energy by replacing continuous-wave 13C and 15N irradiation with rotor-echo 90° pulses. Using formyl-Met-Leu-Phe (f-MLF) and β1 immunoglobulin binding domain of protein G (GB1) as model proteins, we demonstrate experimentally how PERSPIRATIONCP polarization transfer depends on the CP contact time, rf power, pulse flip angle, and 13C carrier frequency and compare the PERSPIRATIONCP performance with the performances of PAINCP, RESPIRATIONCP, and SPECIFICCP for measuring 15N-13C cross peaks. PERSPIRATIONCP achieves long-range 15N-13C transfer and yields higher cross peak-intensities than that of the other techniques. Numerical simulations reproduce the experimental trends and moreover indicate that PERSPIRATIONCP relies on 15N-1H and 13C-1H dipolar couplings rather than 15N-13C dipolar coupling for polarization transfer. Therefore, PERSPIRATIONCP is an rf-efficient and higher-sensitivity alternative to PAINCP for measuring long-range 15N-13C correlations, which are essential for protein resonance assignment and structure determination. Using cross peaks from two PERSPIRATIONCP 15N-13C correlation spectra as the sole distance restraints, supplemented with (φ, ψ) torsion angles obtained from chemical shifts, we calculated the GB1 structure and obtained a backbone root-mean-square deviation of 2.0 Å from the high-resolution structure of the protein. Therefore, this rf-efficient PERSPIRATIONCP method is useful for obtaining many long-range distance restraints for protein structure determination.

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Year:  2018        PMID: 30106585      PMCID: PMC6314680          DOI: 10.1021/acs.jpcb.8b06400

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  44 in total

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Authors:  Johanna Becker-Baldus; Christian Bamann; Krishna Saxena; Henrik Gustmann; Lynda J Brown; Richard C D Brown; Christian Reiter; Ernst Bamberg; Josef Wachtveitl; Harald Schwalbe; Clemens Glaubitz
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3.  PAIN with and without PAR: variants for third-spin assisted heteronuclear polarization transfer.

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Journal:  J Biomol NMR       Date:  2013-06-27       Impact factor: 2.835

4.  Atomic Resolution Structure of Monomorphic Aβ42 Amyloid Fibrils.

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5.  Heteronuclear proton assisted recoupling.

Authors:  Gaël De Paëpe; Józef R Lewandowski; Antoine Loquet; Matt Eddy; Simon Megy; Anja Böckmann; Robert G Griffin
Journal:  J Chem Phys       Date:  2011-03-07       Impact factor: 3.488

6.  Effects of Pectin Molecular Weight Changes on the Structure, Dynamics, and Polysaccharide Interactions of Primary Cell Walls of Arabidopsis thaliana: Insights from Solid-State NMR.

Authors:  Pyae Phyo; Tuo Wang; Chaowen Xiao; Charles T Anderson; Mei Hong
Journal:  Biomacromolecules       Date:  2017-08-22       Impact factor: 6.988

7.  Zinc-binding structure of a catalytic amyloid from solid-state NMR.

Authors:  Myungwoon Lee; Tuo Wang; Olga V Makhlynets; Yibing Wu; Nicholas F Polizzi; Haifan Wu; Pallavi M Gosavi; Jan Stöhr; Ivan V Korendovych; William F DeGrado; Mei Hong
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-31       Impact factor: 11.205

8.  Protein backbone and sidechain torsion angles predicted from NMR chemical shifts using artificial neural networks.

Authors:  Yang Shen; Ad Bax
Journal:  J Biomol NMR       Date:  2013-06-02       Impact factor: 2.835

9.  2H-13C correlation solid-state NMR for investigating dynamics and water accessibilities of proteins and carbohydrates.

Authors:  Martin D Gelenter; Tuo Wang; Shu-Yu Liao; Hugh O'Neill; Mei Hong
Journal:  J Biomol NMR       Date:  2017-07-03       Impact factor: 2.835

10.  Solid-state NMR structure of a pathogenic fibril of full-length human α-synuclein.

Authors:  Marcus D Tuttle; Gemma Comellas; Andrew J Nieuwkoop; Dustin J Covell; Deborah A Berthold; Kathryn D Kloepper; Joseph M Courtney; Jae K Kim; Alexander M Barclay; Amy Kendall; William Wan; Gerald Stubbs; Charles D Schwieters; Virginia M Y Lee; Julia M George; Chad M Rienstra
Journal:  Nat Struct Mol Biol       Date:  2016-03-28       Impact factor: 15.369

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  3 in total

1.  Pulsed Third-Spin-Assisted Recoupling NMR for Obtaining Long-Range 13C-13C and 15N-13C Distance Restraints.

Authors:  Martin D Gelenter; Aurelio J Dregni; Mei Hong
Journal:  J Phys Chem B       Date:  2020-08-06       Impact factor: 2.991

Review 2.  From Angstroms to Nanometers: Measuring Interatomic Distances by Solid-State NMR.

Authors:  Alexander A Shcherbakov; João Medeiros-Silva; Nhi Tran; Martin D Gelenter; Mei Hong
Journal:  Chem Rev       Date:  2021-10-25       Impact factor: 72.087

3.  The peptide hormone glucagon forms amyloid fibrils with two coexisting β-strand conformations.

Authors:  Martin D Gelenter; Katelyn J Smith; Shu-Yu Liao; Venkata S Mandala; Aurelio J Dregni; Matthew S Lamm; Yu Tian; Wei Xu; Darrin J Pochan; Thomas J Tucker; Yongchao Su; Mei Hong
Journal:  Nat Struct Mol Biol       Date:  2019-06-24       Impact factor: 15.369

  3 in total

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