Literature DB >> 23308034

Decoding in Candidatus Riesia pediculicola, close to a minimal tRNA modification set?

Valérie de Crécy-Lagard1, Christian Marck, Henri Grosjean.   

Abstract

A comparative genomic analysis of the recently sequenced human body louse unicellular endosymbiont Candidatus Riesia pediculicola with a reduced genome (582 Kb), revealed that it is the only known organism that might have lost all post-transcriptional base and ribose modifications of the tRNA body, retaining only modifications of the anticodon-stem-loop essential for mRNA decoding. Such a minimal tRNA modification set was not observed in other insect symbionts or in parasitic unicellular bacteria, such as Mycoplasma genitalium (580 Kb), that have also evolved by considerably reducing their genomes. This could be an example of a minimal tRNA modification set required for life, a question that has been at the center of the field for many years, especially for understanding the emergence and evolution of the genetic code.

Entities:  

Year:  2012        PMID: 23308034      PMCID: PMC3539174     

Source DB:  PubMed          Journal:  Trends Cell Mol Biol        ISSN: 0972-8449


  57 in total

1.  Modified constructs of the tRNA TPsiC domain to probe substrate conformational requirements of m(1)A(58) and m(5)U(54) tRNA methyltransferases.

Authors:  R Sengupta; S Vainauskas; C Yarian; E Sochacka; A Malkiewicz; R H Guenther; K M Koshlap; P F Agris
Journal:  Nucleic Acids Res       Date:  2000-03-15       Impact factor: 16.971

2.  tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features.

Authors:  Christian Marck; Henri Grosjean
Journal:  RNA       Date:  2002-10       Impact factor: 4.942

Review 3.  Extreme genome reduction in symbiotic bacteria.

Authors:  John P McCutcheon; Nancy A Moran
Journal:  Nat Rev Microbiol       Date:  2011-11-08       Impact factor: 60.633

4.  Visualizing high error levels during gene expression in living bacterial cells.

Authors:  Mor Meyerovich; Gideon Mamou; Sigal Ben-Yehuda
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-07       Impact factor: 11.205

Review 5.  A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment.

Authors:  John F Atkins; Glenn R Björk
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

Review 6.  Lessons from studying insect symbioses.

Authors:  Angela E Douglas
Journal:  Cell Host Microbe       Date:  2011-10-20       Impact factor: 21.023

Review 7.  Deciphering synonymous codons in the three domains of life: co-evolution with specific tRNA modification enzymes.

Authors:  Henri Grosjean; Valérie de Crécy-Lagard; Christian Marck
Journal:  FEBS Lett       Date:  2010-01-21       Impact factor: 4.124

8.  Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.

Authors:  H Dong; L Nilsson; C G Kurland
Journal:  J Mol Biol       Date:  1996-08-02       Impact factor: 5.469

9.  Apparent lack of discrimination in the reading of certain codons in Mycoplasma mycoides.

Authors:  T Samuelsson; Y S Guindy; F Lustig; T Borén; U Lagerkvist
Journal:  Proc Natl Acad Sci U S A       Date:  1987-05       Impact factor: 11.205

10.  The universal YrdC/Sua5 family is required for the formation of threonylcarbamoyladenosine in tRNA.

Authors:  Basma El Yacoubi; Benjamin Lyons; Yulien Cruz; Robert Reddy; Brian Nordin; Fabio Agnelli; James R Williamson; Paul Schimmel; Manal A Swairjo; Valérie de Crécy-Lagard
Journal:  Nucleic Acids Res       Date:  2009-03-13       Impact factor: 16.971

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  12 in total

1.  Can Protein Expression Be Regulated by Modulation of tRNA Modification Profiles?

Authors:  Leticia Pollo-Oliveira; Valérie de Crécy-Lagard
Journal:  Biochemistry       Date:  2018-12-18       Impact factor: 3.162

2.  Defects in tRNA Anticodon Loop 2'-O-Methylation Are Implicated in Nonsyndromic X-Linked Intellectual Disability due to Mutations in FTSJ1.

Authors:  Michael P Guy; Marie Shaw; Catherine L Weiner; Lynne Hobson; Zornitza Stark; Katherine Rose; Vera M Kalscheuer; Jozef Gecz; Eric M Phizicky
Journal:  Hum Mutat       Date:  2015-09-10       Impact factor: 4.878

3.  Comparative genomic analysis of seven Mycoplasma hyosynoviae strains.

Authors:  Eric A Bumgardner; Weerayuth Kittichotirat; Roger E Bumgarner; Paulraj K Lawrence
Journal:  Microbiologyopen       Date:  2015-02-18       Impact factor: 3.139

4.  Distinctive Genome Reduction Rates Revealed by Genomic Analyses of Two Coxiella-Like Endosymbionts in Ticks.

Authors:  Yuval Gottlieb; Itai Lalzar; Lisa Klasson
Journal:  Genome Biol Evol       Date:  2015-05-28       Impact factor: 3.416

5.  SAXS analysis of the tRNA-modifying enzyme complex MnmE/MnmG reveals a novel interaction mode and GTP-induced oligomerization.

Authors:  Marcus Fislage; Elke Brosens; Egon Deyaert; Alessandro Spilotros; Els Pardon; Remy Loris; Jan Steyaert; Abel Garcia-Pino; Wim Versées
Journal:  Nucleic Acids Res       Date:  2014-03-14       Impact factor: 16.971

6.  Functional importance of Ψ38 and Ψ39 in distinct tRNAs, amplified for tRNAGln(UUG) by unexpected temperature sensitivity of the s2U modification in yeast.

Authors:  Lu Han; Yoshiko Kon; Eric M Phizicky
Journal:  RNA       Date:  2014-12-12       Impact factor: 4.942

Review 7.  A rationale for tRNA modification circuits in the anticodon loop.

Authors:  Lu Han; Eric M Phizicky
Journal:  RNA       Date:  2018-07-19       Impact factor: 4.942

Review 8.  Functions of Bacterial tRNA Modifications: From Ubiquity to Diversity.

Authors:  Valérie de Crécy-Lagard; Marshall Jaroch
Journal:  Trends Microbiol       Date:  2020-07-25       Impact factor: 17.079

9.  In vitro biosynthesis of a universal t6A tRNA modification in Archaea and Eukarya.

Authors:  Ludovic Perrochia; Estelle Crozat; Arnaud Hecker; Wenhua Zhang; Joseph Bareille; Bruno Collinet; Herman van Tilbeurgh; Patrick Forterre; Tamara Basta
Journal:  Nucleic Acids Res       Date:  2012-12-20       Impact factor: 16.971

10.  Minimal genome encoding proteins with constrained amino acid repertoire.

Authors:  Olga Tsoy; Marina Yurieva; Andrey Kucharavy; Mary O'Reilly; Arcady Mushegian
Journal:  Nucleic Acids Res       Date:  2013-07-19       Impact factor: 16.971

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