Literature DB >> 23305619

Dual core processing: MRB1 is an emerging kinetoplast RNA editing complex.

Hassan Hashimi1, Sara L Zimmer, Michelle L Ammerman, Laurie K Read, Julius Lukeš.   

Abstract

Our understanding of kinetoplastid RNA (kRNA) editing has centered on this paradigm: guide RNAs (gRNAs) provide a blueprint for uridine insertion/deletion into mitochondrial mRNAs by the RNA editing core complex (RECC). The characterization of constituent subunits of the mitochondrial RNA-binding complex 1 (MRB1) implies that it too is vital to the editing process. The recently elucidated MRB1 architecture will be instrumental in putting functional data from individual subunits into context. Our model depicts two functions for MRB1: mediating multi-round kRNA editing by coordinating the exchange of multiple gRNAs required by RECC to edit lengthy regions of mRNAs, and then linking kRNA editing with other RNA processing events.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23305619      PMCID: PMC3558622          DOI: 10.1016/j.pt.2012.11.005

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN: 1471-4922


  44 in total

Review 1.  Comparison of ARM and HEAT protein repeats.

Authors:  M A Andrade; C Petosa; S I O'Donoghue; C W Müller; P Bork
Journal:  J Mol Biol       Date:  2001-05-25       Impact factor: 5.469

Review 2.  Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U-insertion/deletion RNA editing.

Authors:  Larry Simpson; Ruslan Aphasizhev; Guanghan Gao; Xuedong Kang
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

3.  The polarity of editing within a multiple gRNA-mediated domain is due to formation of anchors for upstream gRNAs by downstream editing.

Authors:  D A Maslov; L Simpson
Journal:  Cell       Date:  1992-08-07       Impact factor: 41.582

4.  Cell biology. Irremediable complexity?

Authors:  Michael W Gray; Julius Lukes; John M Archibald; Patrick J Keeling; W Ford Doolittle
Journal:  Science       Date:  2010-11-12       Impact factor: 47.728

Review 5.  Is kinetoplastid pan-editing the result of an evolutionary balancing act?

Authors:  Dave Speijer
Journal:  IUBMB Life       Date:  2006-02       Impact factor: 3.885

6.  RNA editing: transfer of genetic information from gRNA to precursor mRNA in vitro.

Authors:  S D Seiwert; K Stuart
Journal:  Science       Date:  1994-10-07       Impact factor: 47.728

7.  Mitochondrial mRNA 3' cleavage/polyadenylation and RNA editing in Trypanosoma brucei are independent events.

Authors:  D J Koslowsky; G Yahampath
Journal:  Mol Biochem Parasitol       Date:  1997-12-01       Impact factor: 1.759

8.  Trypanosoma brucei guide RNA poly(U) tail formation is stabilized by cognate mRNA.

Authors:  M T McManus; B K Adler; V W Pollard; S L Hajduk
Journal:  Mol Cell Biol       Date:  2000-02       Impact factor: 4.272

9.  A trypanosome mitochondrial RNA polymerase is required for transcription and replication.

Authors:  Jayleen Grams; James C Morris; Mark E Drew; Zefeng Wang; Paul T Englund; Stephen L Hajduk
Journal:  J Biol Chem       Date:  2002-02-21       Impact factor: 5.157

10.  Alternative mRNA editing in trypanosomes is extensive and may contribute to mitochondrial protein diversity.

Authors:  Torsten Ochsenreiter; Michael Cipriano; Stephen L Hajduk
Journal:  PLoS One       Date:  2008-02-13       Impact factor: 3.240

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  42 in total

1.  REH2C Helicase and GRBC Subcomplexes May Base Pair through mRNA and Small Guide RNA in Kinetoplastid Editosomes.

Authors:  Vikas Kumar; Bhaskara R Madina; Shelly Gulati; Ajay A Vashisht; Chiedza Kanyumbu; Brittany Pieters; Afzal Shakir; James A Wohlschlegel; Laurie K Read; Blaine H M Mooers; Jorge Cruz-Reyes
Journal:  J Biol Chem       Date:  2016-01-14       Impact factor: 5.157

2.  Kinetoplast DNA-encoded ribosomal protein S12: a possible functional link between mitochondrial RNA editing and translation in Trypanosoma brucei.

Authors:  Inna Aphasizheva; Dmitri A Maslov; Ruslan Aphasizhev
Journal:  RNA Biol       Date:  2013-10-14       Impact factor: 4.652

Review 3.  High throughput sequencing revolution reveals conserved fundamentals of U-indel editing.

Authors:  Sara L Zimmer; Rachel M Simpson; Laurie K Read
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-06-11       Impact factor: 9.957

Review 4.  Constructive edge of uridylation-induced RNA degradation.

Authors:  Ruslan Aphasizhev; Takuma Suematsu; Liye Zhang; Inna Aphasizheva
Journal:  RNA Biol       Date:  2016-10-07       Impact factor: 4.652

5.  PPR polyadenylation factor defines mitochondrial mRNA identity and stability in trypanosomes.

Authors:  Liye Zhang; Francois M Sement; Takuma Suematsu; Tian Yu; Stefano Monti; Lan Huang; Ruslan Aphasizhev; Inna Aphasizheva
Journal:  EMBO J       Date:  2017-07-06       Impact factor: 11.598

6.  Trypanosoma brucei Tb927.2.6100 is an essential protein associated with kinetoplast DNA.

Authors:  Kirsten Beck; Nathalie Acestor; Anjelique Schulfer; Atashi Anupama; Jason Carnes; Aswini K Panigrahi; Ken Stuart
Journal:  Eukaryot Cell       Date:  2013-05-06

7.  Dynamics of mitochondrial RNA-binding protein complex in Trypanosoma brucei and its petite mutant under optimized immobilization conditions.

Authors:  Zhenqiu Huang; Sabine Kaltenbrunner; Eva Šimková; David Stanĕk; Julius Lukeš; Hassan Hashimi
Journal:  Eukaryot Cell       Date:  2014-07-25

8.  RNA binding and core complexes constitute the U-insertion/deletion editosome.

Authors:  Inna Aphasizheva; Liye Zhang; Xiaorong Wang; Robyn M Kaake; Lan Huang; Stefano Monti; Ruslan Aphasizhev
Journal:  Mol Cell Biol       Date:  2014-09-15       Impact factor: 4.272

9.  An arginine-glycine-rich RNA binding protein impacts the abundance of specific mRNAs in the mitochondria of Trypanosoma brucei.

Authors:  Natalie M McAdams; Michelle L Ammerman; Julee Nanduri; Kaylen Lott; John C Fisk; Laurie K Read
Journal:  Eukaryot Cell       Date:  2014-12-05

Review 10.  U-Insertion/Deletion mRNA-Editing Holoenzyme: Definition in Sight.

Authors:  Inna Aphasizheva; Ruslan Aphasizhev
Journal:  Trends Parasitol       Date:  2015-11-10
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